EWM24365.1, cds6299 (CDS) Nannochloropsis gaditana

Overview
NameEWM24365.1
Unique Namecds6299
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:232566..233366 -
Alignment locationCM002468.1:231715..232254 -
Alignment locationCM002468.1:231217..231468 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24365.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100246g11.10060.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:232566..233366 -
CM002468.1supercontigCM002468.1:231715..232254 -
CM002468.1supercontigCM002468.1:231217..231468 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Homology
BLAST of EWM24365.1 vs. NCBI_GenBank
Match: gi|585105762|gb|EWM24365.1| (hypothetical protein Naga_100246g11 [Nannochloropsis gaditana])

HSP 1 Score: 1073.54 bits (2775), Expect = 0.000e+0
Identity = 530/530 (100.00%), Postives = 530/530 (100.00%), Query Frame = 0
Query:    1 MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEGGGDLMHSFKLAALINALQSKYGPQMQLFPTVMRHIISICEEGEGRDGAKGGCSNSWSKNHKNGGGATLIRNTLRKVILSISE 530
            MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEGGGDLMHSFKLAALINALQSKYGPQMQLFPTVMRHIISICEEGEGRDGAKGGCSNSWSKNHKNGGGATLIRNTLRKVILSISE
Sbjct:    1 MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEGGGDLMHSFKLAALINALQSKYGPQMQLFPTVMRHIISICEEGEGRDGAKGGCSNSWSKNHKNGGGATLIRNTLRKVILSISE 530          
BLAST of EWM24365.1 vs. NCBI_GenBank
Match: gi|585105763|gb|EWM24366.1| (hypothetical protein Naga_100246g11 [Nannochloropsis gaditana])

HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 448/449 (99.78%), Postives = 448/449 (99.78%), Query Frame = 0
Query:    1 MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEGG 449
            MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALE G
Sbjct:    1 MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEVG 449          
BLAST of EWM24365.1 vs. NCBI_GenBank
Match: gi|553191778|ref|XP_005855453.1| (hypothetical protein NGA_0097300, partial [Nannochloropsis gaditana CCMP526] >gi|422293612|gb|EKU20912.1| hypothetical protein NGA_0097300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 841.262 bits (2172), Expect = 0.000e+0
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0
Query:   48 MHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEGGGDLMHSFKLAALINALQ 466
            MHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEGGGDLMHSFKLAALINALQ
Sbjct:    1 MHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEGGGDLMHSFKLAALINALQ 419          
BLAST of EWM24365.1 vs. NCBI_GenBank
Match: gi|298708334|emb|CBJ48397.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.8929 bits (224), Expect = 5.034e-17
Identity = 71/239 (29.71%), Postives = 109/239 (45.61%), Query Frame = 0
Query:  254 FCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLC--QPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRG--LEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEGGGDLMHSFKLAALINALQSKYGPQMQLFPTVMRHIISICE 488
            F R  ++PR   L   ASR L+ A++ +   RP +V+  +++PLLC   PA ++GS QCE   R+IKQ    + ++            LE +L GLCG                    P   E  ++ G  +EG              G  H  A     C WT++T+PV+T  L  +P LSD  +  ++  + AA E    L  S K   LI++L ++YGPQ++    V+R  +  C 
Sbjct:   20 FVRAVLVPRARALNAPASRLLVTAVSGIGKARPGVVIDGLVLPLLCGGDPASAVGSAQCELCTRLIKQI---LPKD-----------TLEAVLVGLCG--------------------PAEDESAQTAGGWIEGPSGGSGGNGTNAAAGRRHDAAGSSSRCVWTELTVPVMTTALNLKPALSDRAIAALVRGVEAAAERAA-LQKSLKFTTLIHSLVTRYGPQLKPHVPVLRTAVGRCS 223          
The following BLAST results are available for this feature:
BLAST of EWM24365.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585105762|gb|EWM24365.1|0.000e+0100.00hypothetical protein Naga_100246g11 [Nannochlorops... [more]
gi|585105763|gb|EWM24366.1|0.000e+099.78hypothetical protein Naga_100246g11 [Nannochlorops... [more]
gi|553191778|ref|XP_005855453.1|0.000e+0100.00hypothetical protein NGA_0097300, partial [Nannoch... [more]
gi|298708334|emb|CBJ48397.1|5.034e-1729.71conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6314rna6314Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications