rna6311, rna6311 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6311
Unique Name	rna6311
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2249
Alignment location	CM002468.1:222787..225368 +

Link to JBrowse

Properties


Property Name	Value
Product	oxygen-evolving enhancer protein
Orig transcript id	gnl\|cribi\|Naga_100313g2.7269.mrna
Orig protein id	gnl\|cribi\|Naga_100313g2.7269
Gene	psbO
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:222787..225368 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
psbO	gene6101	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6311	rna6311-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24379.1	cds6296	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:222787..225368+
coding sequence from alignment at CM002468.1:222787..225368+

mRNA sequence

>rna6311 ID=rna6311|Name=rna6311|organism=Nannochloropsis gaditana|type=mRNA|length=2249bp
GGAAGGCACCCTGGGTTTTCCCTCTCATTGGCCGGTGCATGCACCTTGGT
CTCCATGACCAGACCCACATGTTGGTATATCGTCAAATAGTTGATGTTGG
TTGGGTTGATGGGTTTGCGTGGGTGGTCATGATGAGTGGAGGATTAGGAG
CAATCCTTCCCCTCCTGTTGCCTTGTGGAAGGGAAGCGAGCGCGGGTGTT
TACCTTTACTGCAGGCCTTGGTGTTATACACCCTGTCTTCGTACACTCAG
ATGAATAAGAAATTTTGTGGCTTGTACTTACTTAACAGACTGTGGCATTT
TGTGAAGTTGTGGATTGTCTTGAAGAGGGCTGGTATCATGCACTCTCCAC
CCTTCTGAGAGCTTCTGCATTCAAGACACATCTCTGTTTACGTCGCAAAT
ATGTGTCAATTCTCACATGACAATTTTCATACAACATTTTTACCATTGTT
ACAGTCGCCTTTCCATTCCTAGTCATCTTCTCACTAAAACCATGAAGACC
GCTGTCCTTCTTGCTTCCGTCGGGTGCGCTCAGGCATTCGTCCCTCAGAT
GAACGTACAGCCCTCTTTCCTGGATCAGCTCAAGAACGGCGTCTCCAAGG
CCCTCCCCGTCCTTGTGGGCGGATCAGCCTTCCTGGCCCCCTCCATTTCC
AACGCCTTGACGAAGGAGGATCTTTCCTCCCTCTCCTACCTCCAGGTGAA
GGGCACCGGGCTCGCGAATCGATGCCCCGAGGTGGTGGGGGAAGGCAGCA
TTGCCCTGCAAGGTGGGAAGACGTACCAGCTCAGCGACTTGTGCCTGGAG
CCCAAGACCTGGCAAGTCGAGGAGGAGGTGACCAACAAGCGGGGGGAGAC
GACCAAGAGCTTTGTGAACACGAAGCTGATGACCCGCCAGACTTACTCTC
TCGACGGTGTGTCGGGGGATATCTCCGTCGGGGAGGGCGGGAAGATCAAG
TTTGAGGAGAAGGACGGCATCGACTATGCTGCCACCACTGTCCAACTTCC
GGGAGGCGAGCGTGTGCCTTTCCTTTTCACGGTCAAGGAGCTGGTGGCCA
CGGCTGCGCAGCCAGGGAACGCCCTCAAGCCCGGCTTCCAATTTGGCGGC
TCTTTCAAGGTGAGGGAATCTTTTCGATGCTAGGAGAGCTGTCCAGGAAA
TGTCTCAAGTTGTTTTATGCATAACGTTGTGGTGTTGGTGGGTGTTTGGG
AGGAATGGGTAGGAGGCACAGCATCGTCCAAGCCCCTGGTCATGTCCTCC
CCTCTTTTGCCCCCCCGCTCCACTTCCTCTGCTCCCCTTCCTACGTCCCA
TGTCGCCATCGCCGGGTGTTGCGCCCGTCACTCACCCTTTCTTCTTCCCT
CCCGAAACCCATTCATTCGTGTAGGTCCCCTCCTACCGCTCTGGTCTCTT
CTTGGACCCCAAGGGACGAGGCGCGGTGACGGGCTACGACATGGCCGTCG
CCCTCCCTGGTCTGCAGAACTCGGTCGAGGGTGACGAGGAGCTCTTCAAG
GTGCGTCCTGGCCTAGGCAGTGAAAAGACATGCTGTTTGTCGAGTAGGGC
GTGGTGCCCCCACTCTGGGGGTGGGAGGTTCTATCTGTGAGAACTATTGG
GGTATTCCCGCCGGGAGAGTGCGTACTCGGTCTCGAATCAAGTATAAGGA
GCGTGCATCCTACCGTCCTCTTTCCAGTTCCTTCACACCTTTCCTTTTCC
CCTCCCTCCTTCCCTCCCTGTTTTCCTCCTGTACGGCCGCATGGCAGGAG
AACAACAAGATCTTCGACGTGACGAGTGGGAACATCGAGCTGGAGGTGAA
CAAGGTGAACGTGGAGGAAGGCGAGGTGGGCGGGGTTTTCGTATCCACCC
AGTTTTCCGACACGGACATGGGCTCCAAGGCGCCCAAGAAGCTTCTGATG
AAGGGGATCTTTTACGGACGTGTGGCCCAGTAAGTCGTCAACGCCTTGGG
AAAAGGAGCGGAAATAAGGGACGAGGAGGGGGGGGCGAGCCGGATCCTCC
TCCCTCTTCTGGATATCGGAAAGGGGAAGATGGTGTATTTCGTGACATAT
GTTTTGCATTCTCTGTGTGGCGAGAGGTGAGCCGTCGCCTCTTGTGTGTG
GGAGGGTGATCACGAAGAGGGAGCGGGGGAGGCATAGGACCGGTGATGAT
GCTACGATAACCTAGATCGCGGGAGATGGATACTGGAAAGAATGACGAAG
AAAGTGAACGCTCGGGAAAGAAGCACAAGGATGACCGCATGCAGTCTGG

protein sequence of rna6311

>rna6311-protein ID=rna6311-protein|Name=rna6311|organism=Nannochloropsis gaditana|type=polypeptide|length=334bp
MTIFIQHFYHCYSRLSIPSHLLTKTMKTAVLLASVGCAQAFVPQMNVQPS
FLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLA
NRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFV
NTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERV
PFLFTVKELVATAAQPGNALKPGFQFGGSFKVPSYRSGLFLDPKGRGAVT
GYDMAVALPGLQNSVEGDEELFKENNKIFDVTSGNIELEVNKVNVEEGEV
GGVFVSTQFSDTDMGSKAPKKLLMKGIFYGRVAQ

mRNA from alignment at CM002468.1:222787..225368+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6311 ID=rna6311|Name=rna6311|organism=Nannochloropsis gaditana|type=mRNA|length=2582bp|location=Sequence derived from alignment at CM002468.1:222787..225368+ (Nannochloropsis gaditana)
TCATGATGAGTGGAGGATTAGGAGcaatccttcccctcctgttGCCTtgt
ggaagggaagcgagCGCGGGTGTTTACCTTTACTGCAGGCCTTGGTGTTA
TACACCCTGTCTTCGTACACTCAGATGAATAAGAAATTTTGTGGCTTGTA
CTTACTTAACAGACTGTGGCATTTTGTGAAGTTGTGGATTGTCTTGAAGA
GGGCTGGTATCATGCACTCTCCACCCTTCTGAGAGCTTCTGCATTCAAGA
CACATCTCTGTTTACGTCGCAAATATGTGTCAATTCTCACATGACAATTT
TCATACAACATTTTTACCATTGTTACAGTCGCCTTTCCATTCCTAGTCAT
CTTCTCACTAAAACCATGAAGACCGCTGTCCTTCTTGCTTCCGTCGGGTG
CGCTCAGGCATTCGTCCCTCAGATGAACGTACAGCGTAAGTGATCGTTAC
CTCCCAAGAAGGAATTCGCCCCGTTTAGAGTTAGGACGTACGTCGTGGCG
ATTTTGTGCTTGTCATCGTCTTTAAATCGTGGGTACGGGGGCGCTTATGC
CGAAAAGATCTGGTAGCCTCCCGAGATCTCCCCTTCAAAACGCCTCTTAT
GTCGACCGTGAAGAAGAGAGGTTTATCTTCAAGCACAATAAAGGCAGCAC
ATCCTCTCTGATGGTGACCGTTTTCGTCCATTCTTGTCCATCTTTACGAC
ACAGCCTCTTTCCTGGATCAGCTCAAGAACGGCGTctccaaggccctccc
cgtccttgtGGGCGGATCAGCCTTCCTggccccctccatttccaacgcct
tgacgaaggaggatctttcctccctctcctaccTCCAGGTACGCAGTCCT
TCGTTTTGGGAGGGGCGTTGACGAATGcatgctccctttcttgggTATTT
TCCTAGAGGTGAAACGACAAGACgatctcccttttttctctctctcgctc
cttctttctAGACAAGTTTTGAGCTCCATCCTGCGTCCCTTTAATTATAT
TGAATCCTCACTTTTCATGTCTACACAGGTGAAGGGCACCGGGCTCGCGA
ATCGATGCcccgaggtggtgggggaaggcagcATTGCCCTGCAAGGTGGG
AAGACGTACCAGCTCAGCGACTTGTGCCTGGAGCCCAAGACCTGGcaagt
cgaggaggaggtgaccaaCAAGCGGGGGGAGACGACCAAGAGCTTTGTGA
ACACGAAGCTGATGACCCGCCAGACTTACTCTCTCGACGGTGTGTCGGGG
GATATCTccgtcggggagggcgggaagatcAAgtttgaggagaaggacgg
caTCGACTATGCTGCCACCACTGTCCAACTTCCGGGAGGCGAGCGTgtgc
ctttccttttcacggtcaaggagctggtggccaCGGCTGCGCAGCCAGGG
AACGCCCTCAAGCCCGGCTTCCAATTTGGCGGCTCTTTCAAGGTGAGGGA
ATCTTTTCGATGCTAGGAGAGCTGTCCAGGAAATGTCTCAAGTTGTTTTA
TGCATAACGTTGTGGTGTTGGTGGGTGTTTGGGAGGAATGGGTAGGAGGC
ACAGCATCGTCCAAGCCCCTGGTcatgtcctcccctcttttgcccccccg
ctccacttcctctgctccccttcctacGTCCCATGTCGCCATCGCCGGGT
GTTGCGCCCGTCACTcaccctttcttcttccctcccgaaACCCATTCATT
CGTGTAGGTCCCCTCCTACCGCTCTGGTCTCTTCTTGGACCCCAAGGGAC
GAGGCGCGGTGACGGGCTACGACAtggccgtcgccctccctggtCTGCAG
AACTCGGTCGAGGGTGACGAGGAGCTCTTCAAGGTGCGTCCTGGCCTAGG
CAGTGAAAAGACATGCTGTTTGTCGAGTAGGGCGTGGTGCCCCCACTctg
ggggtgggaggttcTATCTGTGAGAACTATTGGGGTATTCCCGCCGGGAG
AGTGCGTACTCGGTCTCGAATCAAGTATAAGGAGCGTGCATCCTACCGTC
CTCTTTCCAGTTCCTTCAcacctttccttttcccctccctccttccctcc
ctgttttCCTCCTGTACGGCCGCATGGCAGGAGAACAACAAGATCTTCGA
CGTGACGAGTGGGAACATCGAGCTGGAGGTGAACAAGGTgaacgtggagg
aaggcgaggtggGCGGGGTTTTCGTATCCACCCAGTTTTCCGACACGGAC
ATGGGCTCCAAGGCGCCCAAGAAGCTTCTGATGAAGGGGATCTTTTACGG
ACGTGTGGCCCAGTAAGTCGTCAACGCCTtgggaaaaggagcggaaataa
gggacgaggaggggggggcgagccggatcctcctccctcttctggATATc
ggaaaggggaagatggTGTATTTCGTGACATATGTTTTGCATTCTCTGTG
TGGCGAGAGGTGAGCCGTCGCCTCTTGTGTGTGGGAGGGTGATcacgaag
agggagcgggggaggcatAGGACCGGTGATGATGCTACGATAACCTAGAT
CGCGGGAGATGGATACTGGAAAGAATGACGAAGAAAGTGAACGCTCGGGA
AAGAAGCACAAGGATGACCGCATGCAGTCTGG

Coding sequence (CDS) from alignment at CM002468.1:222787..225368+

>rna6311 ID=rna6311|Name=rna6311|organism=Nannochloropsis gaditana|type=CDS|length=5025bp|location=Sequence derived from alignment at CM002468.1:222787..225368+ (Nannochloropsis gaditana)
ATGACAATTTTCATACAACATTTTTACCATTGTTACAGTCGCCTTTCCAT
TCCTAGTCATCTTCTCACTAAAACCATGAAGACCGCTGTCCTTCTTGCTT
CCGTCGGGTGCGCTCAGGCATTCGTCCCTCAGATGAACGTACAGCCCTCT
TTCCTGGATCAGCTCAAGAACGGCGTctccaaggccctccccgtccttgt
GGGCGGATCAGCCTTCCTggccccctccatttccaacgccttgacgaagg
aggatctttcctccctctcctaccTCCAGGTGAAGGGCACCGGGCTCGCG
AATCGATGCcccgaggtggtgggggaaggcagcATTGCCCTGCAAGGTGG
GAAGACGTACCAGCTCAGCGACTTGTGCCTGGAGCCCAAGACCTGGcaag
tcgaggaggaggtgaccaaCAAGCGGGGGGAGACGACCAAGAGCTTTGTG
AACACGAAGCTGATGACCCGCCAGACTTACTCTCTCGACGGTGTGTCGGG
GGATATCTccgtcggggagggcgggaagatcAAgtttgaggagaaggacg
gcaTCGACTATGCTGCCACCACTGTCCAACTTCCGGGAGGCGAGCGTgtg
cctttccttttcacggtcaaggagctggtggccaCGGCTGCGCAGCCAGG
GAACGCCCTCAAGCCCGGCTTCCAATTTGGCGGCTCTTTCAAGGTCCCCT
CCTACCGCTCTGGTCTCTTCTTGGACCCCAAGGGACGAGGCGCGGTGACG
GGCTACGACAtggccgtcgccctccctggtCTGCAGAACTCGGTCGAGGG
TGACGAGGAGCTCTTCAAGGAGAACAACAAGATCTTCGACGTGACGAGTG
GGAACATCGAGCTGGAGGTGAACAAGGTgaacgtggaggaaggcgaggtg
gGCGGGGTTTTCGTATCCACCCAGTTTTCCGACACGGACATGGGCTCCAA
GGCGCCCAAGAAGCTTCTGATGAAGGGGATCTTTTACGGACGTGTGGCCC
AGTAAATGACAATTTTCATACAACATTTTTACCATTGTTACAGTCGCCTT
TCCATTCCTAGTCATCTTCTCACTAAAACCATGAAGACCGCTGTCCTTCT
TGCTTCCGTCGGGTGCGCTCAGGCATTCGTCCCTCAGATGAACGTACAGC
CCTCTTTCCTGGATCAGCTCAAGAACGGCGTctccaaggccctccccgtc
cttgtGGGCGGATCAGCCTTCCTggccccctccatttccaacgccttgac
gaaggaggatctttcctccctctcctaccTCCAGGTGAAGGGCACCGGGC
TCGCGAATCGATGCcccgaggtggtgggggaaggcagcATTGCCCTGCAA
GGTGGGAAGACGTACCAGCTCAGCGACTTGTGCCTGGAGCCCAAGACCTG
GcaagtcgaggaggaggtgaccaaCAAGCGGGGGGAGACGACCAAGAGCT
TTGTGAACACGAAGCTGATGACCCGCCAGACTTACTCTCTCGACGGTGTG
TCGGGGGATATCTccgtcggggagggcgggaagatcAAgtttgaggagaa
ggacggcaTCGACTATGCTGCCACCACTGTCCAACTTCCGGGAGGCGAGC
GTgtgcctttccttttcacggtcaaggagctggtggccaCGGCTGCGCAG
CCAGGGAACGCCCTCAAGCCCGGCTTCCAATTTGGCGGCTCTTTCAAGGT
CCCCTCCTACCGCTCTGGTCTCTTCTTGGACCCCAAGGGACGAGGCGCGG
TGACGGGCTACGACAtggccgtcgccctccctggtCTGCAGAACTCGGTC
GAGGGTGACGAGGAGCTCTTCAAGGAGAACAACAAGATCTTCGACGTGAC
GAGTGGGAACATCGAGCTGGAGGTGAACAAGGTgaacgtggaggaaggcg
aggtggGCGGGGTTTTCGTATCCACCCAGTTTTCCGACACGGACATGGGC
TCCAAGGCGCCCAAGAAGCTTCTGATGAAGGGGATCTTTTACGGACGTGT
GGCCCAGTAAATGACAATTTTCATACAACATTTTTACCATTGTTACAGTC
GCCTTTCCATTCCTAGTCATCTTCTCACTAAAACCATGAAGACCGCTGTC
CTTCTTGCTTCCGTCGGGTGCGCTCAGGCATTCGTCCCTCAGATGAACGT
ACAGCCCTCTTTCCTGGATCAGCTCAAGAACGGCGTctccaaggccctcc
ccgtccttgtGGGCGGATCAGCCTTCCTggccccctccatttccaacgcc
ttgacgaaggaggatctttcctccctctcctaccTCCAGGTGAAGGGCAC
CGGGCTCGCGAATCGATGCcccgaggtggtgggggaaggcagcATTGCCC
TGCAAGGTGGGAAGACGTACCAGCTCAGCGACTTGTGCCTGGAGCCCAAG
ACCTGGcaagtcgaggaggaggtgaccaaCAAGCGGGGGGAGACGACCAA
GAGCTTTGTGAACACGAAGCTGATGACCCGCCAGACTTACTCTCTCGACG
GTGTGTCGGGGGATATCTccgtcggggagggcgggaagatcAAgtttgag
gagaaggacggcaTCGACTATGCTGCCACCACTGTCCAACTTCCGGGAGG
CGAGCGTgtgcctttccttttcacggtcaaggagctggtggccaCGGCTG
CGCAGCCAGGGAACGCCCTCAAGCCCGGCTTCCAATTTGGCGGCTCTTTC
AAGGTCCCCTCCTACCGCTCTGGTCTCTTCTTGGACCCCAAGGGACGAGG
CGCGGTGACGGGCTACGACAtggccgtcgccctccctggtCTGCAGAACT
CGGTCGAGGGTGACGAGGAGCTCTTCAAGGAGAACAACAAGATCTTCGAC
GTGACGAGTGGGAACATCGAGCTGGAGGTGAACAAGGTgaacgtggagga
aggcgaggtggGCGGGGTTTTCGTATCCACCCAGTTTTCCGACACGGACA
TGGGCTCCAAGGCGCCCAAGAAGCTTCTGATGAAGGGGATCTTTTACGGA
CGTGTGGCCCAGTAAATGACAATTTTCATACAACATTTTTACCATTGTTA
CAGTCGCCTTTCCATTCCTAGTCATCTTCTCACTAAAACCATGAAGACCG
CTGTCCTTCTTGCTTCCGTCGGGTGCGCTCAGGCATTCGTCCCTCAGATG
AACGTACAGCCCTCTTTCCTGGATCAGCTCAAGAACGGCGTctccaaggc
cctccccgtccttgtGGGCGGATCAGCCTTCCTggccccctccatttcca
acgccttgacgaaggaggatctttcctccctctcctaccTCCAGGTGAAG
GGCACCGGGCTCGCGAATCGATGCcccgaggtggtgggggaaggcagcAT
TGCCCTGCAAGGTGGGAAGACGTACCAGCTCAGCGACTTGTGCCTGGAGC
CCAAGACCTGGcaagtcgaggaggaggtgaccaaCAAGCGGGGGGAGACG
ACCAAGAGCTTTGTGAACACGAAGCTGATGACCCGCCAGACTTACTCTCT
CGACGGTGTGTCGGGGGATATCTccgtcggggagggcgggaagatcAAgt
ttgaggagaaggacggcaTCGACTATGCTGCCACCACTGTCCAACTTCCG
GGAGGCGAGCGTgtgcctttccttttcacggtcaaggagctggtggccaC
GGCTGCGCAGCCAGGGAACGCCCTCAAGCCCGGCTTCCAATTTGGCGGCT
CTTTCAAGGTCCCCTCCTACCGCTCTGGTCTCTTCTTGGACCCCAAGGGA
CGAGGCGCGGTGACGGGCTACGACAtggccgtcgccctccctggtCTGCA
GAACTCGGTCGAGGGTGACGAGGAGCTCTTCAAGGAGAACAACAAGATCT
TCGACGTGACGAGTGGGAACATCGAGCTGGAGGTGAACAAGGTgaacgtg
gaggaaggcgaggtggGCGGGGTTTTCGTATCCACCCAGTTTTCCGACAC
GGACATGGGCTCCAAGGCGCCCAAGAAGCTTCTGATGAAGGGGATCTTTT
ACGGACGTGTGGCCCAGTAAATGACAATTTTCATACAACATTTTTACCAT
TGTTACAGTCGCCTTTCCATTCCTAGTCATCTTCTCACTAAAACCATGAA
GACCGCTGTCCTTCTTGCTTCCGTCGGGTGCGCTCAGGCATTCGTCCCTC
AGATGAACGTACAGCCCTCTTTCCTGGATCAGCTCAAGAACGGCGTctcc
aaggccctccccgtccttgtGGGCGGATCAGCCTTCCTggccccctccat
ttccaacgccttgacgaaggaggatctttcctccctctcctaccTCCAGG
TGAAGGGCACCGGGCTCGCGAATCGATGCcccgaggtggtgggggaaggc
agcATTGCCCTGCAAGGTGGGAAGACGTACCAGCTCAGCGACTTGTGCCT
GGAGCCCAAGACCTGGcaagtcgaggaggaggtgaccaaCAAGCGGGGGG
AGACGACCAAGAGCTTTGTGAACACGAAGCTGATGACCCGCCAGACTTAC
TCTCTCGACGGTGTGTCGGGGGATATCTccgtcggggagggcgggaagat
cAAgtttgaggagaaggacggcaTCGACTATGCTGCCACCACTGTCCAAC
TTCCGGGAGGCGAGCGTgtgcctttccttttcacggtcaaggagctggtg
gccaCGGCTGCGCAGCCAGGGAACGCCCTCAAGCCCGGCTTCCAATTTGG
CGGCTCTTTCAAGGTCCCCTCCTACCGCTCTGGTCTCTTCTTGGACCCCA
AGGGACGAGGCGCGGTGACGGGCTACGACAtggccgtcgccctccctggt
CTGCAGAACTCGGTCGAGGGTGACGAGGAGCTCTTCAAGGAGAACAACAA
GATCTTCGACGTGACGAGTGGGAACATCGAGCTGGAGGTGAACAAGGTga
acgtggaggaaggcgaggtggGCGGGGTTTTCGTATCCACCCAGTTTTCC
GACACGGACATGGGCTCCAAGGCGCCCAAGAAGCTTCTGATGAAGGGGAT
CTTTTACGGACGTGTGGCCCAGTAA

Synonyms

Publications