rna6310, rna6310 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6310
Unique Name	rna6310
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2255
Alignment location	CM002468.1:222661..225368 +

Link to JBrowse

Properties


Property Name	Value
Product	oxygen-evolving enhancer protein
Orig transcript id	gnl\|cribi\|Naga_100313g2.7270.mrna
Orig protein id	gnl\|cribi\|Naga_100313g2.7270
Gene	psbO
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:222661..225368 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
psbO	gene6101	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6310	rna6310-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24380.1	cds6295	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:222661..225368+
coding sequence from alignment at CM002468.1:222661..225368+

mRNA sequence

>rna6310 ID=rna6310|Name=rna6310|organism=Nannochloropsis gaditana|type=mRNA|length=2255bp
TTTGGCCTTGGCACGTCCAATATTCATGAAAGCTCTGGCTTCTGACAGTC
ATTTTGCCACGTCCTCTGATCGTTTTCCATTCGTACAGGTCGCACCGTCC
CGTGCCTTTCATTCATTTTTTGAGGCTTTCTGAAGAGAAAACGGGAGCAA
AGAGAGAACGAGAAGAGAATACCTGTGCGTCAAGATCATTGCCTGTACTT
GCGCGAGGTCTCGAGCGCAAAAGATTCCTCTTGTCATGGCAACCCGACAA
GTAGAATACCATACCGTCCAAGTGGCCAGGGAGTCATTTTTCCTAGATGT
CCGGTACACTAATCTTAAACCTATTGGAGATGGTTCTTACGGATTTGTCT
GCGCCGCCGATGACTCGTTAACCGGTCGACGCGTGGCCATCAAGAAGGTA
GGGGACACGTTCAACGACCTGGTCGACGCCAAGCGGGTCTTGCGGGAAAT
CAAGCTCCTCCGGCATTTCATAGGGCACGAGAACATCGTCCAGATCTACG
ATATCATGACCGTTCCTCCAAACACGGAAGACTTCCGCGACGTCTACATT
GTCACCAACCTCATGGAATCTGACTTGGACCGCATTATTGGCTCCAACCA
ACCATTGAGCGATCAGCATTTTCAGTATTTCCTCTACCAAGTCCTGCGCG
GGCTGAAATACCTGCATTCAGCCAACGTCCTCCACCGGGATTTGAAGCCG
TCCAATTTATTGGTCAACGCCAACTGCGACCTGACGATCTGCGACTTTGG
CTTGGCCCGGGGGGTGGAGGGCGAGTACGAGGAAGAGCTGACCGAGTACG
TGGTCACTCGCTGGTACCGGGCCCCTGAGCTTTTGTGCGACTCCTGCTAC
TATGGGAAAACGGTGGACATCTGGTCTTTGGGTTGCATTTTCGCAGAAAT
GCTGGGCCGGAAGCCTTTCTTCCAGGGGTCCAACCCTTTGCACCAACTGG
AGACGATCGTCGCCAAACTCGGCCTTCCCCCTCCGGAACAGTTGACCTTC
GTGACCCATCCCGCCGCCAAGAAAGCCATTCTGGCCCGAGCCGAGCAACA
GCGACCGCGGCCGCTGCTTTCCTTCTTTCCCCGTGGCACCAATCCCCAAG
CGGTTGCCCTGCTCTCCCGGATGCTCACTTTCCACCCCGAGCATCGCATT
ACGGTCGAGGAGGCCCTCGCACACCCCTACCTCCACGAATTGCACTCTCA
AATGGACGAACCCGCGTGCCAGAAAGCCTTTGATTTTGAATGGGAACGAC
CGTTGAGAGGGGCGGGCGGAGACGAGGGGGGAGGGATGCGAAGAAAGTCT
GTGATACCGAAGCCTGTCCTGCAGCGTTTGATGTACGCAGAAATGCTCTT
CTTCCGAGGCCTGGAAGAGGAGGAGGGCGGGGAGGAAGCAGGAGGGGAGG
GAGCGGAAAGTCTGAAGGAGGAGGAGGCGACTTCTTCCCACCATAACCAC
TCGGCTTCTTCCTCCTCCTCCTCGTCGCTGGGCATGTCGGAGTCGGGGGG
AAGAGGTAGGGGTCGCTCGTCCAACCCCGTCTTGCCCCCTCCTCCCTCCA
CGGCTGCCGCGCTCTTGGCGTGCACTTCACAACGGCAACACCAGCAGCAG
CAGCAAGAGGCTAAAGTGCAGGCGCATGGGCAAGAAGAGAAAACGCGCTC
TAACGAGGGAGGTGTCACCGAAACAGGAGGAGCCGTAGGGCCCGAAGGAG
GGCGTGAGGGAGGGGAAGGAATGAAGGAAGGAAGCCGAGGATGGGCATCG
TCGGCCACGGGGGCAGGAGAGGGAAAGGAGGGTCCGATCGAGAGCCAAAC
AGGAAAATTAGAGCACATTGAGCGGTAAAGAGATAGCGCCGAGATCTGCA
CACCCTGATCAGGGTATAACGGGTCAATGGTCAGAATAGGGCATTTGCCG
GCTGTGACAGACAGGAAGGAATGGAAATAGTGCGACCAGACCTGACCAGA
CCTCAGGACACTTTGCTCGCAGGAACTTCAGGCGGAGGATGGAAGATGAT
ACATGTCAGGCACCGTCTCGCAAAGGCGCGGCAGGGAGGCCTCAAGGGAA
GGGGGAGCAGACAAAGCGCAAATCAGGGCTGGGGAAGAACGGGAAAAAGG
TGCCACCGTGCATACACTGTGCTGCCTATTTATAAATCAAAGATGGCGGT
TGAACCTTGCCATAAGAGTGCAACGCACTCACTCTCTCCTTGAACTTCAC
AGGGTCTAGTAACGCCGAAGTGTGAAGAAAGAAAAACGACATTGGGGACT
AAATG

protein sequence of rna6310

>rna6310-protein ID=rna6310-protein|Name=rna6310|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MTIFIQHFYHCYSRLSIPSHLLTKTMKTAVLLASVGCAQAFVPQMNVQPS
FLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLA
NRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFV
NTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERV
PFLFTVKELVATAAQPGNALKPGFQFGGSFKVRESFRC

mRNA from alignment at CM002468.1:222661..225368+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6310 ID=rna6310|Name=rna6310|organism=Nannochloropsis gaditana|type=mRNA|length=2708bp|location=Sequence derived from alignment at CM002468.1:222661..225368+ (Nannochloropsis gaditana)
ggaaggcacccTGGGTTTTCCCTCTCATTGGCCGGTGCATGCACCTTGGT
CTCCATGACCAGACCCACATGTTGGTATATCGTCAAATAGTTGATGTTGG
TTGGGTTGATGGGTTTGCGTGGGTGGTCATGATGAGTGGAGGATTAGGAG
caatccttcccctcctgttGCCTtgtggaagggaagcgagCGCGGGTGTT
TACCTTTACTGCAGGCCTTGGTGTTATACACCCTGTCTTCGTACACTCAG
ATGAATAAGAAATTTTGTGGCTTGTACTTACTTAACAGACTGTGGCATTT
TGTGAAGTTGTGGATTGTCTTGAAGAGGGCTGGTATCATGCACTCTCCAC
CCTTCTGAGAGCTTCTGCATTCAAGACACATCTCTGTTTACGTCGCAAAT
ATGTGTCAATTCTCACATGACAATTTTCATACAACATTTTTACCATTGTT
ACAGTCGCCTTTCCATTCCTAGTCATCTTCTCACTAAAACCATGAAGACC
GCTGTCCTTCTTGCTTCCGTCGGGTGCGCTCAGGCATTCGTCCCTCAGAT
GAACGTACAGCGTAAGTGATCGTTACCTCCCAAGAAGGAATTCGCCCCGT
TTAGAGTTAGGACGTACGTCGTGGCGATTTTGTGCTTGTCATCGTCTTTA
AATCGTGGGTACGGGGGCGCTTATGCCGAAAAGATCTGGTAGCCTCCCGA
GATCTCCCCTTCAAAACGCCTCTTATGTCGACCGTGAAGAAGAGAGGTTT
ATCTTCAAGCACAATAAAGGCAGCACATCCTCTCTGATGGTGACCGTTTT
CGTCCATTCTTGTCCATCTTTACGACACAGCCTCTTTCCTGGATCAGCTC
AAGAACGGCGTctccaaggccctccccgtccttgtGGGCGGATCAGCCTT
CCTggccccctccatttccaacgccttgacgaaggaggatctttcctccc
tctcctaccTCCAGGTACGCAGTCCTTCGTTTTGGGAGGGGCGTTGACGA
ATGcatgctccctttcttgggTATTTTCCTAGAGGTGAAACGACAAGACg
atctcccttttttctctctctcgctccttctttctAGACAAGTTTTGAGC
TCCATCCTGCGTCCCTTTAATTATATTGAATCCTCACTTTTCATGTCTAC
ACAGGTGAAGGGCACCGGGCTCGCGAATCGATGCcccgaggtggtggggg
aaggcagcATTGCCCTGCAAGGTGGGAAGACGTACCAGCTCAGCGACTTG
TGCCTGGAGCCCAAGACCTGGcaagtcgaggaggaggtgaccaaCAAGCG
GGGGGAGACGACCAAGAGCTTTGTGAACACGAAGCTGATGACCCGCCAGA
CTTACTCTCTCGACGGTGTGTCGGGGGATATCTccgtcggggagggcggg
aagatcAAgtttgaggagaaggacggcaTCGACTATGCTGCCACCACTGT
CCAACTTCCGGGAGGCGAGCGTgtgcctttccttttcacggtcaaggagc
tggtggccaCGGCTGCGCAGCCAGGGAACGCCCTCAAGCCCGGCTTCCAA
TTTGGCGGCTCTTTCAAGGTGAGGGAATCTTTTCGATGCTAGGAGAGCTG
TCCAGGAAATGTCTCAAGTTGTTTTATGCATAACGTTGTGGTGTTGGTGG
GTGTTTGGGAGGAATGGGTAGGAGGCACAGCATCGTCCAAGCCCCTGGTc
atgtcctcccctcttttgcccccccgctccacttcctctgctccccttcc
tacGTCCCATGTCGCCATCGCCGGGTGTTGCGCCCGTCACTcaccctttc
ttcttccctcccgaaACCCATTCATTCGTGTAGGTCCCCTCCTACCGCTC
TGGTCTCTTCTTGGACCCCAAGGGACGAGGCGCGGTGACGGGCTACGACA
tggccgtcgccctccctggtCTGCAGAACTCGGTCGAGGGTGACGAGGAG
CTCTTCAAGGTGCGTCCTGGCCTAGGCAGTGAAAAGACATGCTGTTTGTC
GAGTAGGGCGTGGTGCCCCCACTctgggggtgggaggttcTATCTGTGAG
AACTATTGGGGTATTCCCGCCGGGAGAGTGCGTACTCGGTCTCGAATCAA
GTATAAGGAGCGTGCATCCTACCGTCCTCTTTCCAGTTCCTTCAcacctt
tccttttcccctccctccttccctccctgttttCCTCCTGTACGGCCGCA
TGGCAGGAGAACAACAAGATCTTCGACGTGACGAGTGGGAACATCGAGCT
GGAGGTGAACAAGGTgaacgtggaggaaggcgaggtggGCGGGGTTTTCG
TATCCACCCAGTTTTCCGACACGGACATGGGCTCCAAGGCGCCCAAGAAG
CTTCTGATGAAGGGGATCTTTTACGGACGTGTGGCCCAGTAAGTCGTCAA
CGCCTtgggaaaaggagcggaaataagggacgaggaggggggggcgagcc
ggatcctcctccctcttctggATATcggaaaggggaagatggTGTATTTC
GTGACATATGTTTTGCATTCTCTGTGTGGCGAGAGGTGAGCCGTCGCCTC
TTGTGTGTGGGAGGGTGATcacgaagagggagcgggggaggcatAGGACC
GGTGATGATGCTACGATAACCTAGATCGCGGGAGATGGATACTGGAAAGA
ATGACGAAGAAAGTGAACGCTCGGGAAAGAAGCACAAGGATGACCGCATG
CAGTCTGG

Coding sequence (CDS) from alignment at CM002468.1:222661..225368+

>rna6310 ID=rna6310|Name=rna6310|organism=Nannochloropsis gaditana|type=CDS|length=2151bp|location=Sequence derived from alignment at CM002468.1:222661..225368+ (Nannochloropsis gaditana)
ATGACAATTTTCATACAACATTTTTACCATTGTTACAGTCGCCTTTCCAT
TCCTAGTCATCTTCTCACTAAAACCATGAAGACCGCTGTCCTTCTTGCTT
CCGTCGGGTGCGCTCAGGCATTCGTCCCTCAGATGAACGTACAGCCCTCT
TTCCTGGATCAGCTCAAGAACGGCGTctccaaggccctccccgtccttgt
GGGCGGATCAGCCTTCCTggccccctccatttccaacgccttgacgaagg
aggatctttcctccctctcctaccTCCAGGTGAAGGGCACCGGGCTCGCG
AATCGATGCcccgaggtggtgggggaaggcagcATTGCCCTGCAAGGTGG
GAAGACGTACCAGCTCAGCGACTTGTGCCTGGAGCCCAAGACCTGGcaag
tcgaggaggaggtgaccaaCAAGCGGGGGGAGACGACCAAGAGCTTTGTG
AACACGAAGCTGATGACCCGCCAGACTTACTCTCTCGACGGTGTGTCGGG
GGATATCTccgtcggggagggcgggaagatcAAgtttgaggagaaggacg
gcaTCGACTATGCTGCCACCACTGTCCAACTTCCGGGAGGCGAGCGTgtg
cctttccttttcacggtcaaggagctggtggccaCGGCTGCGCAGCCAGG
GAACGCCCTCAAGCCCGGCTTCCAATTTGGCGGCTCTTTCAAGGTGAGGG
AATCTTTTCGATGCTAGATGACAATTTTCATACAACATTTTTACCATTGT
TACAGTCGCCTTTCCATTCCTAGTCATCTTCTCACTAAAACCATGAAGAC
CGCTGTCCTTCTTGCTTCCGTCGGGTGCGCTCAGGCATTCGTCCCTCAGA
TGAACGTACAGCCCTCTTTCCTGGATCAGCTCAAGAACGGCGTctccaag
gccctccccgtccttgtGGGCGGATCAGCCTTCCTggccccctccatttc
caacgccttgacgaaggaggatctttcctccctctcctaccTCCAGGTGA
AGGGCACCGGGCTCGCGAATCGATGCcccgaggtggtgggggaaggcagc
ATTGCCCTGCAAGGTGGGAAGACGTACCAGCTCAGCGACTTGTGCCTGGA
GCCCAAGACCTGGcaagtcgaggaggaggtgaccaaCAAGCGGGGGGAGA
CGACCAAGAGCTTTGTGAACACGAAGCTGATGACCCGCCAGACTTACTCT
CTCGACGGTGTGTCGGGGGATATCTccgtcggggagggcgggaagatcAA
gtttgaggagaaggacggcaTCGACTATGCTGCCACCACTGTCCAACTTC
CGGGAGGCGAGCGTgtgcctttccttttcacggtcaaggagctggtggcc
aCGGCTGCGCAGCCAGGGAACGCCCTCAAGCCCGGCTTCCAATTTGGCGG
CTCTTTCAAGGTGAGGGAATCTTTTCGATGCTAGATGACAATTTTCATAC
AACATTTTTACCATTGTTACAGTCGCCTTTCCATTCCTAGTCATCTTCTC
ACTAAAACCATGAAGACCGCTGTCCTTCTTGCTTCCGTCGGGTGCGCTCA
GGCATTCGTCCCTCAGATGAACGTACAGCCCTCTTTCCTGGATCAGCTCA
AGAACGGCGTctccaaggccctccccgtccttgtGGGCGGATCAGCCTTC
CTggccccctccatttccaacgccttgacgaaggaggatctttcctccct
ctcctaccTCCAGGTGAAGGGCACCGGGCTCGCGAATCGATGCcccgagg
tggtgggggaaggcagcATTGCCCTGCAAGGTGGGAAGACGTACCAGCTC
AGCGACTTGTGCCTGGAGCCCAAGACCTGGcaagtcgaggaggaggtgac
caaCAAGCGGGGGGAGACGACCAAGAGCTTTGTGAACACGAAGCTGATGA
CCCGCCAGACTTACTCTCTCGACGGTGTGTCGGGGGATATCTccgtcggg
gagggcgggaagatcAAgtttgaggagaaggacggcaTCGACTATGCTGC
CACCACTGTCCAACTTCCGGGAGGCGAGCGTgtgcctttccttttcacgg
tcaaggagctggtggccaCGGCTGCGCAGCCAGGGAACGCCCTCAAGCCC
GGCTTCCAATTTGGCGGCTCTTTCAAGGTGAGGGAATCTTTTCGATGCTA
G

Synonyms

Publications