EWM24380.1, cds6295 (CDS) Nannochloropsis gaditana

Overview
NameEWM24380.1
Unique Namecds6295
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:223077..223221 +
Alignment locationCM002468.1:223491..223624 +
Alignment locationCM002468.1:223815..224252 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24380.1
Productoxygen-evolving enhancer protein
Orig transcript idgnl|cribi|Naga_100313g2.7270.mrna
GenepsbO
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:223077..223221 +
CM002468.1supercontigCM002468.1:223491..223624 +
CM002468.1supercontigCM002468.1:223815..224252 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0016020membrane
GO:0016021integral component of membrane
GO:0009654photosystem II oxygen evolving complex
GO:0019898extrinsic component of membrane
GO:0009523photosystem II
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006091generation of precursor metabolites and energy
GO:0042549photosystem II stabilization
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR011250OMP/PagP_b-brl
IPR002628PSII_MSP
Homology
BLAST of EWM24380.1 vs. NCBI_GenBank
Match: gi|585105778|gb|EWM24380.1| (oxygen-evolving enhancer protein [Nannochloropsis gaditana])

HSP 1 Score: 489.189 bits (1258), Expect = 5.160e-175
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query:    1 MTIFIQHFYHCYSRLSIPSHLLTKTMKTAVLLASVGCAQAFVPQMNVQPSFLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFKVRESFRC 238
            MTIFIQHFYHCYSRLSIPSHLLTKTMKTAVLLASVGCAQAFVPQMNVQPSFLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFKVRESFRC
Sbjct:    1 MTIFIQHFYHCYSRLSIPSHLLTKTMKTAVLLASVGCAQAFVPQMNVQPSFLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFKVRESFRC 238          
BLAST of EWM24380.1 vs. NCBI_GenBank
Match: gi|585105777|gb|EWM24379.1| (oxygen-evolving enhancer protein [Nannochloropsis gaditana])

HSP 1 Score: 476.093 bits (1224), Expect = 2.560e-168
Identity = 234/237 (98.73%), Postives = 235/237 (99.16%), Query Frame = 0
Query:    1 MTIFIQHFYHCYSRLSIPSHLLTKTMKTAVLLASVGCAQAFVPQMNVQPSFLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFKVRESFR 237
            MTIFIQHFYHCYSRLSIPSHLLTKTMKTAVLLASVGCAQAFVPQMNVQPSFLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFKV  S+R
Sbjct:    1 MTIFIQHFYHCYSRLSIPSHLLTKTMKTAVLLASVGCAQAFVPQMNVQPSFLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFKV-PSYR 236          
BLAST of EWM24380.1 vs. NCBI_GenBank
Match: gi|553181556|ref|XP_005853586.1| (photosystem II oxygen-evolving enhancer protein 1 [Nannochloropsis gaditana CCMP526] >gi|553191757|ref|XP_005855446.1| photosystem II oxygen-evolving enhancer protein 1 [Nannochloropsis gaditana CCMP526] >gi|422293605|gb|EKU20905.1| photosystem II oxygen-evolving enhancer protein 1 [Nannochloropsis gaditana CCMP526] >gi|422295472|gb|EKU22771.1| photosystem II oxygen-evolving enhancer protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 419.083 bits (1076), Expect = 3.952e-146
Identity = 209/212 (98.58%), Postives = 210/212 (99.06%), Query Frame = 0
Query:   26 MKTAVLLASVGCAQAFVPQMNVQPSFLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFKVRESFR 237
            MKTAVLLASVGCAQAFVPQMNVQPSFLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFKV  S+R
Sbjct:    1 MKTAVLLASVGCAQAFVPQMNVQPSFLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFKV-PSYR 211          
BLAST of EWM24380.1 vs. NCBI_GenBank
Match: gi|676381211|ref|XP_009033884.1| (hypothetical protein AURANDRAFT_69678 [Aureococcus anophagefferens] >gi|323455658|gb|EGB11526.1| hypothetical protein AURANDRAFT_69678 [Aureococcus anophagefferens])

HSP 1 Score: 219.164 bits (557), Expect = 1.778e-67
Identity = 122/215 (56.74%), Postives = 151/215 (70.23%), Query Frame = 0
Query:   26 MKTAVLLASVGCAQAFVPQMNVQPSFLDQLKNGVSKALPVLVGGSAFLAPSI--SNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFKVRESFRC 238
            MK A++   +  A A  P    +P+   +L   V  A  +L  G +F  P++  +NA+T E  + LSY QVKGTGLANRC EVVG+ SI++ G   Y L D+CLEPKTWQVEE+V NK+G+ +K FVNTKLMTRQTY+LDG+SG +S G G  I F E+DGIDYA TTVQLPGGERVPFLFTVKELVA     G A KPG++FGG+FKV  S+R 
Sbjct:    1 MKAAIISTLLFGADALQP---TKPAVAQKLATDV--AAGILAAGVSFAGPAVLSANAITSEVRNQLSYEQVKGTGLANRCNEVVGKDSISVPG-SGYSLVDVCLEPKTWQVEEQVANKKGDVSKQFVNTKLMTRQTYTLDGISGKLSGGSG--ITFTEEDGIDYAPTTVQLPGGERVPFLFTVKELVAKGN--GGAFKPGYEFGGTFKV-PSYRT 204          
BLAST of EWM24380.1 vs. NCBI_GenBank
Match: gi|318610518|dbj|BAJ61702.1| (oxygen-evolving enhancer protein [Vaucheria frigida])

HSP 1 Score: 218.394 bits (555), Expect = 6.582e-67
Identity = 114/186 (61.29%), Postives = 137/186 (73.66%), Query Frame = 0
Query:   45 MNVQPSFLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSF 230
            +N+  +  D  KN    AL V  G S F AP+ ++A+TK+ + SLSY+QVKGTGLANRCPEV+G  SI + G    +L DLC+EPK +QV EE   K+GET K +VNTKLMTRQTY+L G+ G  +  EG K+ F EKDGIDYAATTVQLPGGERVPFLFTVKELVA AA  GN++ PGFQFGG F
Sbjct:   36 VNMSMTAQDDFKNVAVGALAVFAGLSFFGAPA-ADAITKDQIDSLSYMQVKGTGLANRCPEVIGTESINVNG--KMKLMDLCIEPKVFQVLEETATKKGETKKEYVNTKLMTRQTYTLYGIEGSFAPEEG-KLTFREKDGIDYAATTVQLPGGERVPFLFTVKELVAKAATSGNSVAPGFQFGGGF 217          
BLAST of EWM24380.1 vs. NCBI_GenBank
Match: gi|98962678|gb|ABF59672.1| (photosystem II extrinsic protein O [Vaucheria litorea] >gi|193870778|gb|ACF22979.1| chloroplast photosystem II extrinsic protein O [Vaucheria litorea] >gi|193870780|gb|ACF22980.1| photosystem II extrinsic protein O [Elysia chlorotica])

HSP 1 Score: 215.698 bits (548), Expect = 7.041e-66
Identity = 116/186 (62.37%), Postives = 137/186 (73.66%), Query Frame = 0
Query:   45 MNVQPSFLDQLKNGVSKALPVLVGGSAFLAPSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSF 230
            M+VQ    D +K     AL +L G S   AP    A+TK+ + SLSYLQVKGTGLANRCPEV G GSI + G KT ++ D+C+EPKT+QV EE ++KRGE  K +VNTKLMTRQTY+L G+ G  +  E GKI F EKDGIDYAATT+QLPGGERVPFLFTVKELVA A  PGN++ PG QFGG F
Sbjct:   39 MSVQ----DDIKTLAVGALTILAGVSILNAPV--EAITKDQIESLSYLQVKGTGLANRCPEVFGTGSIDVNG-KT-KIVDMCIEPKTFQVLEETSSKRGEAKKEYVNTKLMTRQTYTLYGIDGSFAP-ENGKITFREKDGIDYAATTIQLPGGERVPFLFTVKELVAQATTPGNSVTPGLQFGGPF 215          
BLAST of EWM24380.1 vs. NCBI_GenBank
Match: gi|318610510|dbj|BAJ61701.1| (oxygen-evolving enhancer protein [Botrydium granulatum])

HSP 1 Score: 212.231 bits (539), Expect = 1.906e-64
Identity = 108/163 (66.26%), Postives = 136/163 (83.44%), Query Frame = 0
Query:   69 GSAFLAPSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFK 231
            G +FLA + + A+TK+ + SLSY+QVKGTGLANRCPEVVGEG+I +  GKT ++ DLC+EPK +QV EE ++++GE  K +VNTKLMTRQTY+L G+ GD++  E GK+ F EKDGIDYAATTVQLPGGERVPFLFTVKELVA AA+ G+++ PGFQFGG+FK
Sbjct:   59 GLSFLA-APAEAITKDQIDSLSYMQVKGTGLANRCPEVVGEGTINV-AGKT-KIVDLCIEPKVFQVLEESSSRKGEVKKEYVNTKLMTRQTYTLYGIEGDLT-SEDGKLVFTEKDGIDYAATTVQLPGGERVPFLFTVKELVAKAAKGGSSVAPGFQFGGAFK 217          
BLAST of EWM24380.1 vs. NCBI_GenBank
Match: gi|32130541|gb|AAN11311.1| (oxygen-evolving enhancer 1 [Heterosigma akashiwo])

HSP 1 Score: 204.527 bits (519), Expect = 1.148e-61
Identity = 105/158 (66.46%), Postives = 122/158 (77.22%), Query Frame = 0
Query:   75 PSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFKV 232
            P  + A+TK + +SL YLQVKGTGLANRC EV+G  SI + G K  QL DLC+EPKT+QVEEE   K G   K+FVNTKLMTRQTY+LDG+SG IS  + GKI F E+DGIDYAA+TVQ PGGERVPFLFTVKELVATA+  G+ + PGFQ GG F V
Sbjct:   46 PMSAFAITKAESNSLDYLQVKGTGLANRCSEVIGTDSITISGKK--QLVDLCIEPKTFQVEEEKVAKSGSIQKAFVNTKLMTRQTYTLDGISGTIS-SKDGKIVFTEEDGIDYAASTVQKPGGERVPFLFTVKELVATASTSGDKIAPGFQMGGKFTV 200          
BLAST of EWM24380.1 vs. NCBI_GenBank
Match: gi|318610532|dbj|BAJ61704.1| (oxygen-evolving enhancer protein [Kryptoperidinium foliaceum])

HSP 1 Score: 200.29 bits (508), Expect = 5.488e-60
Identity = 110/193 (56.99%), Postives = 142/193 (73.58%), Query Frame = 0
Query:   48 QPSFLDQLKNGVSKALPVLVGGSAFLA--PSISNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSFKVRESFRC 238
            Q + L  LK+ ++ A  V + G+A L+     + ALTK +++ L+YLQVKGTGLANRCPEVVGE +I+ + G+  +L D+C+EPK W VEEE+  K G+T K FVN+K++TRQTY+LDG+ G +S  EGG I F+EK+GIDYAATTVQLPGGERVPFLFTVK+LVA     G + KPGFQ GG F V  S+R 
Sbjct:   26 QNTALFSLKDDLANAGKVALAGAAALSIMAQPAQALTKSEINELTYLQVKGTGLANRCPEVVGEDTISPKNGQ--KLVDMCIEPKAWAVEEEI-GKAGKTEKKFVNSKVVTRQTYTLDGIEGVLS-SEGGNIVFKEKEGIDYAATTVQLPGGERVPFLFTVKDLVAKGN--GGSFKPGFQMGGDFSV-PSYRT 211          
BLAST of EWM24380.1 vs. NCBI_GenBank
Match: gi|28565363|gb|AAO43192.1| (oxygen-evolving enhancer protein 1 precursor, partial [Phaeodactylum tricornutum])

HSP 1 Score: 199.904 bits (507), Expect = 8.160e-60
Identity = 101/153 (66.01%), Postives = 120/153 (78.43%), Query Frame = 0
Query:   78 SNALTKEDLSSLSYLQVKGTGLANRCPEVVGEGSIALQGGKTYQLSDLCLEPKTWQVEEEVTNKRGETTKSFVNTKLMTRQTYSLDGVSGDISVGEGGKIKFEEKDGIDYAATTVQLPGGERVPFLFTVKELVATAAQPGNALKPGFQFGGSF 230
            +NALTK  ++ LSYLQVKGTGLANRCPEVVGE SI  +GG+  +L D+C+EPK W VEEE+  K G T K FVN+K+MTRQTY+LDG+ G +   EGG I F+E++GIDYAATTVQLPGGERVPFLFTVK+LVA     G + KPGFQ GG F
Sbjct:   59 ANALTKSQINELSYLQVKGTGLANRCPEVVGEDSITPKGGQ--RLVDMCIEPKAWAVEEEI-GKAGRTEKKFVNSKVMTRQTYTLDGIEGALK-SEGGSIVFQEQEGIDYAATTVQLPGGERVPFLFTVKDLVAKGN--GGSFKPGFQMGGDF 205          
The following BLAST results are available for this feature:
BLAST of EWM24380.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105778|gb|EWM24380.1|5.160e-175100.00oxygen-evolving enhancer protein [Nannochloropsis ... [more]
gi|585105777|gb|EWM24379.1|2.560e-16898.73oxygen-evolving enhancer protein [Nannochloropsis ... [more]
gi|553181556|ref|XP_005853586.1|3.952e-14698.58photosystem II oxygen-evolving enhancer protein 1 ... [more]
gi|676381211|ref|XP_009033884.1|1.778e-6756.74hypothetical protein AURANDRAFT_69678 [Aureococcus... [more]
gi|318610518|dbj|BAJ61702.1|6.582e-6761.29oxygen-evolving enhancer protein [Vaucheria frigid... [more]
gi|98962678|gb|ABF59672.1|7.041e-6662.37photosystem II extrinsic protein O [Vaucheria lito... [more]
gi|318610510|dbj|BAJ61701.1|1.906e-6466.26oxygen-evolving enhancer protein [Botrydium granul... [more]
gi|32130541|gb|AAN11311.1|1.148e-6166.46oxygen-evolving enhancer 1 [Heterosigma akashiwo][more]
gi|318610532|dbj|BAJ61704.1|5.488e-6056.99oxygen-evolving enhancer protein [Kryptoperidinium... [more]
gi|28565363|gb|AAO43192.1|8.160e-6066.01oxygen-evolving enhancer protein 1 precursor, part... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6310rna6310Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications