rna6157, rna6157 (mRNA) Nannochloropsis gaditana

Overview
Namerna6157
Unique Namerna6157
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length866
Alignment locationCM002467.1:733818..735187 -

Link to JBrowse

Properties
Property NameValue
Productdna replication licensing factor mcm5
Orig transcript idgnl|cribi|Naga_100427g1.10031.mrna
Orig protein idgnl|cribi|Naga_100427g1.10031
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:733818..735187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100427g1gene5948Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6157rna6157-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24527.1cds6142Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6157 ID=rna6157|Name=rna6157|organism=Nannochloropsis gaditana|type=mRNA|length=866bp
AGGTGGCCATCCACGAGGCCATGGAGCAGCAGACTATTTCGATCGCCAAG
GCGGGCATCACGACCGTCCTCAACACCCGTGCCTCCGTTCTGGCCGCCGC
CAATCCCATCTTCGGGCGCTACGACGACTTGAAATCCGCAGCTGAGAACA
TCGACCTCATGACCACCATCCTTTCCCGCTTCGACCTGATATTCATCGTC
CGGGACATTCGGGACGAAGAACGGGACAGGGGCATTGCTCGGCACGTCCT
CGGGGTCCACATGAACGCGAACGCGCCGGCGGGGATCCGCGTCACGCAGG
GGGCGGAGGGGGATATTGACATGCCCACCATCAAGAAATTCGTCAGCTAC
TGTCGACAACGCTGTGCCCCCCGCCTCTCCGTCGAAGCAGGGCAGACCCT
GGCGAGCGAGTACGTGGGCATTCGGGATACCGTGCGCCGTCGCACCCTCG
AGTCCGAGGATGGCAACAGCCCCACCGTTCCCATCACAGTCCGCCAGCTG
GAAGCCTTGGTGCGAATCAGCGAGTCCCTGGCCAAGATGCGTCTGCGCGC
GGAAGTGACACAGGAGGACGTCCGAGAGGCGATCCGATTGTTTCAGGCCT
CCACCGGCGTGGCGCTCGCGGCCGATTACAACGGGGACCCTACCCGCACC
ATGGGCTTCGAACGTCCCGAACAAGTCGCCCGGGCGGAGGAATTCCTCAA
GCGGCGGATTCCCTTGGGGAGCACCACCAAAACGAGCCGGATCCAGGAAG
AAGGAACAGGGCAAGGCTACAGTCACCCAGCCTTGGTGCGTGCGATCTCC
CTACTCATCCGACGCGGGGAGTTGATGGAAAGGGATCGGGGGAGGGTGTT
GAAGAGAATCCGGTAG
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protein sequence of rna6157

>rna6157-protein ID=rna6157-protein|Name=rna6157|organism=Nannochloropsis gaditana|type=polypeptide|length=408bp
MDFDSDRVTVVNTNPQYTGAAQVVDESLFEKERARNSFREFVRNFRLGSD
FLYRNQLLQRYRRGQYWLEINIGHLHDYEARLLKHLQDQPAEYLPVYEKG
AREALSQLLLEAPVGGGMEGREEREEGMEGGVADIQLTLKSEQVPRPLRQ
LAAGNVGRLVKVSGIITGASAVRARAVAVRVQCSQCHLVKVIPAQSGFSG
IQLPTYCEGDDPNAMVGEGGAEAGAGKCKSRNYVILADESVYIDQQPLKL
QESPETVPTGEMPRSISLSCERYLADRVAAGTRVSIIGIFSTFSHMAARG
TAASHAVKSAYIRVVGLEVEVEGAGRASTSFTPKEEELFVSMARQPDIYQ
KLSSSLAPSISGEYTVDIKKALACQLLSGSRKTLPGEEGRREGSRRGGRQ
GVRCRDLA
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mRNA from alignment at CM002467.1:733818..735187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6157 ID=rna6157|Name=rna6157|organism=Nannochloropsis gaditana|type=mRNA|length=1370bp|location=Sequence derived from alignment at CM002467.1:733818..735187- (Nannochloropsis gaditana)
ATGGATTTCGATAGCGATCGCGTCACAGTAGTAAATACGAACCCGCAATA
CACGGGCGCAGCGCAGGTCGTAGACGAGTCTCTCTTCGAGAAGGAACGGG
CCCGCAACAGTTTTCGGTACGTGTGCGAAGGGAGGTTTAGGAGGGATTTC
AAGCCTTTCGTAGGCTAGGCTCTGTCTTGTCAGCCTGACACATTCCGCCT
AGAGCAAGCACTGGAGCGCGGCCTTCTCCGTGCTCACTCGTGTCTCCGTC
CACGCGCAGGGAGTTCGTCCGCAATTTCCGCCTCGGGTCGGACTTTTTGT
ACCGGAACCAACTCCTACAGCGGTACCGACGGGGTCAGTACTGGTTGGAA
ATTAATATTGGTCATCTGCATGACTACGAAGCCCGCCTCTTGAAGCACCT
GCAGGACCAACCCGCGGAGTACCTCCCCGTCTACGAGAAAGGGGCGCGGG
AAGCCCTTTCCCAGCTCCTGCTCGAGGCCCCGGTGGGGGGAGGGATGGAA
GGAAGGGAGGAGCGGGAGGAGGGGATGGAAGGGGGGGTCGCTGACATCCA
ACTGACCTTGAAGAGCGAGCAAGTCCCGCGGCCGCTGCGTCAGCTGGCGG
CGGGAAACGTGGGAAGGTTAGTTAAGGTGTCGGGTATCATCACAGGCGCC
TCGGCCGTGCGGGCGCGGGCGGTGGCCGTTCGTGTACAATGCTCCCAGTG
TCATTTGGTCAAGGTGATTCCCGCCCAGAGTGGCTTCAGTGGGATCCAGC
TCCCTACCTACTGCGAGGGCGACGATCCCAACGCCATGGTGGGCGAGGGC
GGGGCGGAGGCAGGGGCCGGGAAGTGCAAGAGTCGGAACTACGTGATCCT
GGCCGACGAATCCGTGTACATTGACCAACAACCCTTGAAACTCCAAGAGA
GTCCAGAAACGGTCCCCACGGGCGAGATGCCACGTTCCATCTCCCTGTCC
TGCGAACGTTACCTTGCCGACCGAGTCGCCGCCGGAACACGCGTGAGCAT
CATTGGGATTTTTTCCACCTTCAGTCACATGGCAGCCCGGGGCACGGCGG
CGAGCCACGCCGTCAAGAGTGCGTACATCCGGGTAGTTGGCTTGGAAGTG
GAGGTGGAAGGGGCCGGCCGGGCTTCCACCTCCTTCACCCCCAAGGAGGA
GGAGCTTTTCGTCTCCATGGCCCGCCAGCCCGACATATACCAGAAGCTGT
CGAGCAGCCTGGCTCCCTCTATCTCGGGGGAGTATACCGTAGATATCAAG
AAGGCGCTCGCCTGCCAACTTTTAAGCGGGTCCCGCAAGACTTTGCCCGG
TGAGGAAGGACGGAGGGAGGGGTCGAGGAGGGGAGGGAGGCAGGGCGTTC
GGTGTCGTGACCTGGCTTAA
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Coding sequence (CDS) from alignment at CM002467.1:733818..735187-

>rna6157 ID=rna6157|Name=rna6157|organism=Nannochloropsis gaditana|type=CDS|length=2454bp|location=Sequence derived from alignment at CM002467.1:733818..735187- (Nannochloropsis gaditana)
GGAGTTCGTCCGCAATTTCCGCCTCGGGTCGGACTTTTTGTACCGGAACC
AACTCCTACAGCGGTACCGACGGGGTCAGTACTGGTTGGAAATTAATATT
GGTCATCTGCATGACTACGAAGCCCGCCTCTTGAAGCACCTGCAGGACCA
ACCCGCGGAGTACCTCCCCGTCTACGAGAAAGGGGCGCGGGAAGCCCTTT
CCCAGCTCCTGCTCGAGGCCCCGGTGGGGGGAGGGATGGAAGGAAGGGAG
GAGCGGGAGGAGGGGATGGAAGGGGGGGTCGCTGACATCCAACTGACCTT
GAAGAGCGAGCAAGTCCCGCGGCCGCTGCGTCAGCTGGCGGCGGGAAACG
TGGGAAGGTTAGTTAAGGTGTCGGGTATCATCACAGGCGCCTCGGCCGTG
CGGGCGCGGGCGGTGGCCGTTCGTGTACAATGCTCCCAGTGTCATTTGGT
CAAGGTGATTCCCGCCCAGAGTGGCTTCAGTGGGATCCAGCTCCCTACCT
ACTGCGAGGGCGACGATCCCAACGCCATGGTGGGCGAGGGCGGGGCGGAG
GCAGGGGCCGGGAAGTGCAAGAGTCGGAACTACGTGATCCTGGCCGACGA
ATCCGTGTACATTGACCAACAACCCTTGAAACTCCAAGAGAGTCCAGAAA
CGGTCCCCACGGGCGAGATGCCACGTTCCATCTCCCTGTCCTGCGAACGT
TACCTTGCCGACCGAGTCGCCGCCGGAACACGCGTGAGCATCATTGGGAT
TTTTTCCACCTTCAGTCACATGGCAGCCCGGGGCACGGCGGCGAGCCACG
CCGTCAAGAGTGCGTACATCCGGGTAGTTGGCTTGGAAGTGGAGGTGGAA
GGGGCCGGCCGGGCTTCCACCTCCTTCACCCCCAAGGAGGAGGAGCTTTT
CGTCTCCATGGCCCGCCAGCCCGACATATACCAGAAGCTGTCGAGCAGCC
TGGCTCCCTCTATCTCGGGGGAGTATACCGTAGATATCAAGAAGGCGCTC
GCCTGCCAACTTTTAAGCGGGTCCCGCAAGACTTTGCCCGGTGAGGAAGG
ACGGAGGGAGGGGTCGAGGAGGGGAGGGAGGCAGGGCGTTCGGTGTCGTG
ACCTGGCTTAAATGGATTTCGATAGCGATCGCGTCACAGTAGTAAATACG
AACCCGCAATACACGGGCGCAGCGCAGGTCGTAGACGAGTCTCTCTTCGA
GAAGGAACGGGCCCGCAACAGTTTTCGGGAGTTCGTCCGCAATTTCCGCC
TCGGGTCGGACTTTTTGTACCGGAACCAACTCCTACAGCGGTACCGACGG
GGTCAGTACTGGTTGGAAATTAATATTGGTCATCTGCATGACTACGAAGC
CCGCCTCTTGAAGCACCTGCAGGACCAACCCGCGGAGTACCTCCCCGTCT
ACGAGAAAGGGGCGCGGGAAGCCCTTTCCCAGCTCCTGCTCGAGGCCCCG
GTGGGGGGAGGGATGGAAGGAAGGGAGGAGCGGGAGGAGGGGATGGAAGG
GGGGGTCGCTGACATCCAACTGACCTTGAAGAGCGAGCAAGTCCCGCGGC
CGCTGCGTCAGCTGGCGGCGGGAAACGTGGGAAGGTTAGTTAAGGTGTCG
GGTATCATCACAGGCGCCTCGGCCGTGCGGGCGCGGGCGGTGGCCGTTCG
TGTACAATGCTCCCAGTGTCATTTGGTCAAGGTGATTCCCGCCCAGAGTG
GCTTCAGTGGGATCCAGCTCCCTACCTACTGCGAGGGCGACGATCCCAAC
GCCATGGTGGGCGAGGGCGGGGCGGAGGCAGGGGCCGGGAAGTGCAAGAG
TCGGAACTACGTGATCCTGGCCGACGAATCCGTGTACATTGACCAACAAC
CCTTGAAACTCCAAGAGAGTCCAGAAACGGTCCCCACGGGCGAGATGCCA
CGTTCCATCTCCCTGTCCTGCGAACGTTACCTTGCCGACCGAGTCGCCGC
CGGAACACGCGTGAGCATCATTGGGATTTTTTCCACCTTCAGTCACATGG
CAGCCCGGGGCACGGCGGCGAGCCACGCCGTCAAGAGTGCGTACATCCGG
GTAGTTGGCTTGGAAGTGGAGGTGGAAGGGGCCGGCCGGGCTTCCACCTC
CTTCACCCCCAAGGAGGAGGAGCTTTTCGTCTCCATGGCCCGCCAGCCCG
ACATATACCAGAAGCTGTCGAGCAGCCTGGCTCCCTCTATCTCGGGGGAG
TATACCGTAGATATCAAGAAGGCGCTCGCCTGCCAACTTTTAAGCGGGTC
CCGCAAGACTTTGCCCGGTGAGGAAGGACGGAGGGAGGGGTCGAGGAGGG
GAGGGAGGCAGGGCGTTCGGTGTCGTGACCTGGCTTAAATGGATTTCGAT
AGCGATCGCGTCACAGTAGTAAATACGAACCCGCAATACACGGGCGCAGC
GCAGGTCGTAGACGAGTCTCTCTTCGAGAAGGAACGGGCCCGCAACAGTT
TTCG
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Synonyms
Publications