rna6073, rna6073 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6073
Unique Name	rna6073
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	210
Alignment location	CM002467.1:509652..512653 -

Link to JBrowse

Properties


Property Name	Value
Product	dna gyrase subunit b
Orig transcript id	gnl\|cribi\|Naga_100171g16.2668.mrna
Orig protein id	gnl\|cribi\|Naga_100171g16.2668
Gene	TOP4B
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:509652..512653 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
TOP4B	gene5869	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24610.1	cds6058	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6073	rna6073-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:509652..512653-
coding sequence from alignment at CM002467.1:509652..512653-

mRNA sequence

>rna6073 ID=rna6073|Name=rna6073|organism=Nannochloropsis gaditana|type=mRNA|length=210bp
ATGGGACTCATGCAAGACGTGTTCGTGAGGGACCCTGAGCACACGCGGCT
CTTGCAAGAGGCGTGGGCGGATCCTGAGATTTTCCGGTATTTGGTGGATG
AGCTGCCTTTCTTCTCGGTGATCAAGCCTTTGCGAGCGCTGAGGGAGAAG
AAGGTGCTGTCTCCGCAGGATTTTGTCGCCTCGTTTAGGTGTGGACTCAT
GGTGGTGTGA

protein sequence of rna6073

>rna6073-protein ID=rna6073-protein|Name=rna6073|organism=Nannochloropsis gaditana|type=polypeptide|length=825bp
MTARKGKARYAIETQTRGNLGFVAVVDRASNEWSSLFFTFNSCDTNFLDV
KHRVRGQDIGLSNPWMVSRLPSRLSVVAASICFTTDMLSRPLGGMALVML
RLIGGWSGVRVFGFPTSSYPRLSGLSALASTRVSSDSQRRAFSVKPTANR
RRRTVGMEATSIAPPPLPSMSSPPSTPVGGSYGADKITVLEGLEPVRKRP
GMYIGSTGVKGLHHLIFEVVDNSIDEALAGHCTAVEVTIGEDGSVTVSDD
GRGIPCEVHSKTGRSALETVLTVLHAGGKFGGDASGYKVSGGLHGVGVSV
VNALSESLTATVRRDGKVHIMRFARGKPLGEMEINPDPDAVTGSSASGTS
VRFKPDAEIFKTSTTFEFDRVSGRLDELAYLNAGIRIVMTDERGEGRRQE
FFHEGGIREYVQLMCSSKEELHPDVAVIHAAGEKNGVAVEAALRWSKDQY
DDLLIGFANGIRTGDGGTHLDGLKSVLTRTINSMARKAGKLKDGKDNLTG
DFVREGLTAIVSVKVPDPEFEGQTKNRLGNPEVRGIVDTIVGESLVNTFE
WNPRVLGAIVDKAMSAQQAAQAAKAARDMVRRKSLLQTTVLPGKLADCSS
RDPGESEIYIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIEKAATEKIY
QNTELQALISALGLGIKGNEFDPATLRYHRIMIMTDADVDGAHIRILLLT
FLFRYQRALVERGYVYIACPPLYKVTQGKTVKYAYSQEELAEVQSSFKGK
TALSLQRFKGLGEMMPVQLWETTMNPATRILKQVTIEDAAEADKMFMLLM
GDAVGPRKDFINRNADALRLDDLDF

mRNA from alignment at CM002467.1:509652..512653-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6073 ID=rna6073|Name=rna6073|organism=Nannochloropsis gaditana|type=mRNA|length=3002bp|location=Sequence derived from alignment at CM002467.1:509652..512653- (Nannochloropsis gaditana)
GGCGTGGTCCAGCCCGGCCAAGAAAAGCAGAGACAACGAAACAGAGTGCA
GGCATTTCCATACAGTTGCATGCAATACATGTGAAAGTATGGTTAGCGTC
TACTGATCACCAGTGCCGGGTTCACCTACAAACTGTGCCGGTGATTGATT
CACCGGTTGTTCCTAGTTGCTGCTTCTTCGAAGCCTCAAGACAAGCAGTC
AGAAAGTTACTAGGTTCAGGCCCGTGCGCGCAGGAAAAACATGACCGGGC
CGTCCCGAGGACAGGAATGCCCTTTATCCATGCCCTGTACATGTAGCAAG
GATGTCAGTCCCAACACGTGGGACACGACCGCGTACGAGTGGTGGCTCCA
GGCCTGCACTAAGCGCTCCCCGTCTAAACCATGACGGCGCGAAAGGGGAA
GGCGAGATACGCAATAGAGACACAAACGAGGGGTAACTTGGGGTTTGTAG
CCGTAGTTGACCGTGCTTCGAATGAATGGTCAAGCTTATTTTTCACCTTT
AATTCCTGCGACACAAACTTCTTGGACGTAAAACACAGGGTGCGAGGGCA
GGATATTGGACTGAGTAATCCATGGATGGTTAGTCGGCTGCCCTCAAGAC
TTTCAGTCGTCGCCGCTTCTATCTGCTTCACCACAGACATGCTCAGTCGG
CCCTTGGGAGGTATGGCCCTCGTCATGCTGCGTCTAATCGGAGGCTGGTC
CGGTGTGAGAGTGTTTGGTTTTCCAACGTCTTCCTATCCGAGGCTTTCAG
GACTCTCCGCCTTGGCCAGTACCCGCGTGAGCAGTGACAGCCAGCGACGT
GCTTTCAGCGTCAAGCCAACGGCGAACCGACGACGTCGCACCGTGGGCAT
GGAAGCCACAAGCATCGCTCCACCGCCCCTACCAAGCATGAGTTCCCCCC
CATCGACTCCTGTGGGCGGGTCTTACGGGGCCGATAAGATCACGGTGCTT
GAGGGCCTGGAACCGGTGCGGAAGCGGCCAGGCATGTACATCGGATCCAC
AGGAGTCAAGGGTCTCCACCACCTAATCTTTGAGGTTGTCGACAACTCCA
TCGACGAGGCGCTGGCTGGGCATTGCACGGCCGTGGAAGTGACCATCGGC
GAGGATGGCAGCGTCACTGTCTCGGACGACGGACGCGGCATACCCTGCGA
GGTGCACTCCAAAACGGGCCGTTCCGCCCTGGAGACGGTGCTGACAGTCC
TGCATGCGGGCGGGAAGTTCGGTGGCGACGCCTCAGGGTACAAGGTCTCA
GGCGGCCTGCACGGAGTGGGGGTCTCCGTGGTGAACGCCCTGAGTGAGTC
TTTGACGGCCACGGTGCGGCGCGACGGGAAGGTGCATATCATGCGCTTCG
CCAGGGGGAAGCCGCTAGGGGAAATGGAGATCAATCCGGACCCAGACGCG
GTGACAGGTTCCTCCGCGAGCGGAACGAGCGTGCGATTCAAGCCAGACGC
GGAGATCTTTAAGACCAGCACGACGTTTGAATTTGATCGTGTGTCGGGCA
GGCTGGACGAGCTCGCTTACTTGAATGCGGGGATCAGAATCGTCATGACA
GACGAGCGCGGAGAAGGCCGGAGACAGGAGTTCTTTCATGAGGGGGGAAT
TCGGGAATACGTGCAGTTGATGTGCAGCAGCAAAGAGGAGCTGCATCCTG
ACGTCGCAGTCATCCACGCGGCCGGTGAGAAGAACGGGGTCGCCGTGGAG
GCCGCCCTCCGGTGGAGCAAGGACCAGTATGACGATCTCTTGATCGGCTT
TGCGAACGGCATTCGGACCGGAGACGGGGGCACGCACTTGGACGGTTTGA
AGAGCGTCTTGACGCGCACTATCAACAGCATGGCGCGAAAGGCGGGAAAG
CTCAAGGACGGAAAGGACAATTTGACTGGGGACTTCGTCCGGGAGGGACT
GACAGCAATAGTGAGCGTCAAAGTTCCAGATCCAGAGTTTGAAGGACAGA
CGAAGAACCGCCTGGGTAATCCGGAGGTGCGTGGGATAGTCGACACGATC
GTCGGCGAAAGTCTTGTAAACACGTTTGAGTGGAACCCGAGGGTCTTGGG
TGCCATCGTCGACAAAGCCATGTCCGCTCAACAAGCAGCCCAGGCTGCCA
AAGCTGCCAGAGACATGGTGCGGCGCAAGTCCTTGTTACAGACCACGGTC
TTGCCAGGGAAACTGGCCGACTGTTCCTCGCGTGACCCGGGCGAGAGCGA
AATTTACATCGTCGAGGGCGACTCAGCGGCTGGTAGCGCCAAGCAGGGAC
GGGATCGGCGCACTCAAGCCATCCTTCCTCTGCGTGGGAAAATACTGAAC
ATTGAAAAAGCAGCCACGGAGAAAATTTACCAAAACACAGAGCTACAAGC
GCTTATCTCGGCGTTGGGACTCGGGATCAAGGGCAATGAGTTTGATCCCG
CAACGCTCCGATATCACCGGATTATGATCATGACCGACGCGGATGTGGAT
GGTGCCCACATTCGCATCCTTCTTCTCACGTTCCTCTTCCGATATCAGCG
AGCTTTGGTTGAACGCGGCTATGTCTACATCGCCTGTCCGCCGCTTTATA
AGGTGACGCAAGGGAAGACTGTCAAGTACGCGTATTCACAAGAGGAATTA
GCAGAGGTACAAAGCTCTTTTAAGGGCAAAACGGCTTTGTCATTGCAGCG
GTTCAAGGGCCTCGGTGAGATGATGCCCGTGCAACTGTGGGAGACGACCA
TGAATCCAGCGACAAGGATACTGAAACAGGTAACGATTGAGGACGCGGCA
GAGGCAGACAAGATGTTCATGCTATTGATGGGCGACGCTGTGGGCCCACG
AAAGGATTTCATTAACCGCAATGCCGATGCCTTGCGCCTGGACGACTTAG
ATTTTTAAAAACCTGTCAAGCGTTTTTCTGTTTGGAAAAAATCACAAAGT
AAACTTGACAAACTTCTATGTGACATCGCAGAAACTGTAAGCTACAGAAT
TGAAGAAGATTCCTTAAACGGAAGGAAATACACGCCCTGACTATAACGTT
TC

Coding sequence (CDS) from alignment at CM002467.1:509652..512653-

>rna6073 ID=rna6073|Name=rna6073|organism=Nannochloropsis gaditana|type=CDS|length=2478bp|location=Sequence derived from alignment at CM002467.1:509652..512653- (Nannochloropsis gaditana)
ATGACGGCGCGAAAGGGGAAGGCGAGATACGCAATAGAGACACAAACGAG
GGGTAACTTGGGGTTTGTAGCCGTAGTTGACCGTGCTTCGAATGAATGGT
CAAGCTTATTTTTCACCTTTAATTCCTGCGACACAAACTTCTTGGACGTA
AAACACAGGGTGCGAGGGCAGGATATTGGACTGAGTAATCCATGGATGGT
TAGTCGGCTGCCCTCAAGACTTTCAGTCGTCGCCGCTTCTATCTGCTTCA
CCACAGACATGCTCAGTCGGCCCTTGGGAGGTATGGCCCTCGTCATGCTG
CGTCTAATCGGAGGCTGGTCCGGTGTGAGAGTGTTTGGTTTTCCAACGTC
TTCCTATCCGAGGCTTTCAGGACTCTCCGCCTTGGCCAGTACCCGCGTGA
GCAGTGACAGCCAGCGACGTGCTTTCAGCGTCAAGCCAACGGCGAACCGA
CGACGTCGCACCGTGGGCATGGAAGCCACAAGCATCGCTCCACCGCCCCT
ACCAAGCATGAGTTCCCCCCCATCGACTCCTGTGGGCGGGTCTTACGGGG
CCGATAAGATCACGGTGCTTGAGGGCCTGGAACCGGTGCGGAAGCGGCCA
GGCATGTACATCGGATCCACAGGAGTCAAGGGTCTCCACCACCTAATCTT
TGAGGTTGTCGACAACTCCATCGACGAGGCGCTGGCTGGGCATTGCACGG
CCGTGGAAGTGACCATCGGCGAGGATGGCAGCGTCACTGTCTCGGACGAC
GGACGCGGCATACCCTGCGAGGTGCACTCCAAAACGGGCCGTTCCGCCCT
GGAGACGGTGCTGACAGTCCTGCATGCGGGCGGGAAGTTCGGTGGCGACG
CCTCAGGGTACAAGGTCTCAGGCGGCCTGCACGGAGTGGGGGTCTCCGTG
GTGAACGCCCTGAGTGAGTCTTTGACGGCCACGGTGCGGCGCGACGGGAA
GGTGCATATCATGCGCTTCGCCAGGGGGAAGCCGCTAGGGGAAATGGAGA
TCAATCCGGACCCAGACGCGGTGACAGGTTCCTCCGCGAGCGGAACGAGC
GTGCGATTCAAGCCAGACGCGGAGATCTTTAAGACCAGCACGACGTTTGA
ATTTGATCGTGTGTCGGGCAGGCTGGACGAGCTCGCTTACTTGAATGCGG
GGATCAGAATCGTCATGACAGACGAGCGCGGAGAAGGCCGGAGACAGGAG
TTCTTTCATGAGGGGGGAATTCGGGAATACGTGCAGTTGATGTGCAGCAG
CAAAGAGGAGCTGCATCCTGACGTCGCAGTCATCCACGCGGCCGGTGAGA
AGAACGGGGTCGCCGTGGAGGCCGCCCTCCGGTGGAGCAAGGACCAGTAT
GACGATCTCTTGATCGGCTTTGCGAACGGCATTCGGACCGGAGACGGGGG
CACGCACTTGGACGGTTTGAAGAGCGTCTTGACGCGCACTATCAACAGCA
TGGCGCGAAAGGCGGGAAAGCTCAAGGACGGAAAGGACAATTTGACTGGG
GACTTCGTCCGGGAGGGACTGACAGCAATAGTGAGCGTCAAAGTTCCAGA
TCCAGAGTTTGAAGGACAGACGAAGAACCGCCTGGGTAATCCGGAGGTGC
GTGGGATAGTCGACACGATCGTCGGCGAAAGTCTTGTAAACACGTTTGAG
TGGAACCCGAGGGTCTTGGGTGCCATCGTCGACAAAGCCATGTCCGCTCA
ACAAGCAGCCCAGGCTGCCAAAGCTGCCAGAGACATGGTGCGGCGCAAGT
CCTTGTTACAGACCACGGTCTTGCCAGGGAAACTGGCCGACTGTTCCTCG
CGTGACCCGGGCGAGAGCGAAATTTACATCGTCGAGGGCGACTCAGCGGC
TGGTAGCGCCAAGCAGGGACGGGATCGGCGCACTCAAGCCATCCTTCCTC
TGCGTGGGAAAATACTGAACATTGAAAAAGCAGCCACGGAGAAAATTTAC
CAAAACACAGAGCTACAAGCGCTTATCTCGGCGTTGGGACTCGGGATCAA
GGGCAATGAGTTTGATCCCGCAACGCTCCGATATCACCGGATTATGATCA
TGACCGACGCGGATGTGGATGGTGCCCACATTCGCATCCTTCTTCTCACG
TTCCTCTTCCGATATCAGCGAGCTTTGGTTGAACGCGGCTATGTCTACAT
CGCCTGTCCGCCGCTTTATAAGGTGACGCAAGGGAAGACTGTCAAGTACG
CGTATTCACAAGAGGAATTAGCAGAGGTACAAAGCTCTTTTAAGGGCAAA
ACGGCTTTGTCATTGCAGCGGTTCAAGGGCCTCGGTGAGATGATGCCCGT
GCAACTGTGGGAGACGACCATGAATCCAGCGACAAGGATACTGAAACAGG
TAACGATTGAGGACGCGGCAGAGGCAGACAAGATGTTCATGCTATTGATG
GGCGACGCTGTGGGCCCACGAAAGGATTTCATTAACCGCAATGCCGATGC
CTTGCGCCTGGACGACTTAGATTTTTAA

Synonyms

Publications