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Properties
| Property Name | Value |
|---|
| Product | Zinc finger, RING-type, conserved site |
| Orig transcript id | gnl|cribi|Naga_100076g1.8821.mrna |
| Orig protein id | gnl|cribi|Naga_100076g1.8821 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:313475..316494 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5996 ID=rna5996|Name=rna5996|organism=Nannochloropsis gaditana|type=mRNA|length=1490bp
CAGGGTCTGGCACCTTTCGAGGGAGTTATCAATTAGAAATTGTCCCTTCC
GTCAAGGATGCTGGCACGCCTGTTCAAACGTCGCCACCGCGGAAGTCCCG
CTTCTAGCCTCGCGTCGGACGATCACCCATCAATGAATGAGCCGGACCTC
GATGTTTCCAGGACATCTAGAAGGTACACGGGCAGTCACGACAAGGAAGG
GGCCTCGGCCATTGAGAAGGAAACGTTTGCAGCGCAAGCCGAGATAGCAT
CAACAGAAAAATTCCTCCTTGAACGTCAGGGGGCGCGCATGCGCGACGAA
TTGGCGAGAAAGAAGTTCACAGTGGCCAGCCTATCCACACAGGTGCAGGA
ACTTACAGATGAAGTTAGGCGCTGGGAGAAGGAGACTAAATGTAAGGACA
CGATGTTGGAGGGGTGCGCGCAACGTCTGCATGAGCAGGAGGTAGCCCTC
TCGCGCGCCAGGCGGGAGAAGACAGAGACGGACGAGATGCTGGAGGCGAC
CGCCGAGAGCCTTCGGGAGACGCGGGCGCGACTGGAGCAACTAGAAGGAA
GGGGGCTGTGGGAGCCTGTCGGGAAAGCCATGGACGGGGGTCTTGTGGGC
GAGGCGAGGGGCGCGCCGACTGCCACAGGAGAGGTCCCAAGTAAGCGCAC
GGGCATGGCCCGAATATATGCCTTGTCTCTCGCGTGCGTCGCAATCTTGG
CGATGGGTGTTTTTGCGGGAGCCTCGCTCGATGTCGTGTCCCTGGAAGGC
ATCACACCTCTCGGGACGACCTGTCGAAGAAGCGCTCTTCTTGTCCTTCG
GCCCGGGGGACCCTCCCTCGCCATGCGGGAGTATATCAGCAGCTGCCGAA
CCTCGCAGTGGCTCACGACCAGTGGCGGTACGGAGACGAGCCTGGGTGGC
TGCCAGAATCGCCATTTCCTGTGGCTGCAGGGTGACGGCAACCTCATCCT
GTACAGAGGAACATCGCCGAGTCGGCACGCGGGACCCGTGTGGGCCACTC
AGCGAATAGAGGGGAAGCGTGCGCTGGGCTTGGAGGGAGAGTCGCTGGGA
AATGCCCGGGGGAAAAAAGGTCGTCGCGACGGGGGGAGGCAAGAGGAAAG
GCCGAGATATTCGTATCGCGCCTTTGTGGACGGAAAAAAGCGGCTCAAGG
TTGTGAGGCGCCTGGAGGGAAGTGCTGATGAGAAAACTGTTTTCAGCATG
GCCGCCAAAAGGCTGCCCAAGGTGTTGTTCCCTTGGCCTTTTCTGAAGGA
TTGAGGGGGAGCCTGTGTGAACGAAGTCGAATAGGCGCAGAGCCACATCA
GCAACGCATGTAGATAGACCGATATCCCACAGTTGCGGTACGCATAACAG
AGCACCACATTGTCTCAAAAGAAAGCTTCAAGATGAAAAGATTACGGTGG
ACATCCCGTCACGGTACTCAGTTTGTACTCATTCCGGAAATTACACGCTG
GAAGGAAAGTAAATGCATACTGCACACGACACGTTTGGCA back to topprotein sequence of rna5996 >rna5996-protein ID=rna5996-protein|Name=rna5996|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
MAFMDLNLPLYLCFAYPRRFGSDHNFYERPIPFLFSAHLFINSTGPKRRL
SHFKMMEQASWLQEHYYDADGESNRSSANSSIGSLGGLRSFDVEGSGGGN
AGEPSSSRRVVKGESDLRAIKALVQQLAGPSLPSLSSSPLTSEPLPASRS
NSSSHSSSPRSSHSSSLESLGADNDGAHGHHGSLSGTDGDSERAGARAVG
AGGFFQDVDLEAGESQRWSDAGPSGQTQDADRTLCLICYEDFPLEEEPPR
LPLPALHGPPDPPTRPNIPPTAPALPPRPSPRPACPHSFCRKCVVAYLET
RMREGRTDFPCPMRGDADCRHAFR back to topmRNA from alignment at CM002467.1:313475..316494+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5996 ID=rna5996|Name=rna5996|organism=Nannochloropsis gaditana|type=mRNA|length=3020bp|location=Sequence derived from alignment at CM002467.1:313475..316494+ (Nannochloropsis gaditana)
CAGAAAAGGCCAAGGGAACAACACCTTGGGCAGCCTTTTGGCGGCCATGC
TGAAAACAGTTTTCTCATCAGCActtccctccaggcgccTCACAACCTTG
AGCCGCTTTTTTCCGTCCACAAAGGCGCGATACGAATATCTCGgcctttc
ctcttgcctccccccGTCGCGACGAccttttttcccccgggCATTTCCCA
GcgactctccctccaagcccagcgCACGCTTCCCCTCTATTCGCTGAGTG
GCCCACACGGGTCCCGCGTGCCGACTCGGCGATGTTCCTCTGTACAGGAT
GAGGTTGCCGTCACCCTGCAGCCACAGGAAATGGCGATTCTGGCAGCCAC
CCAGGCTCGTCTCCGTACCGCCACTGGTCGTGAGCCACTGCGAGGTTCGG
CAGCTGCTGATATACTCCCgcatggcgagggagggtccCCCGGGccgaag
gacaagaagagcGCTTCTTCGACAGGTCGTCCCGAGAGGTGTGATGCCTT
CCAGGGACACGACATCGAGCGAGGCTCCCGCAAAAACACCCATCGCCAAG
ATTGCGACGCACGCGAGAGACAAGGCATATATTCGGGCCATGCCCGTGCG
CTTACTTGGGACCTCTCCTGTGGCAGTCGGCGCGCccctcgcctcgccca
cAAGACCCCCGTCCATGGCTTTCCCGACAGGCTCCCAcagcccccttcct
tctagTTGCTCCAGTCGCGCCCGCGTCTCCCGAAGGCTCTCGGCGGTCGC
CTCCAGCATCTCGTCCGTCTCTGTCTTCTCCCGCCTGGCGCGCGAGAGGG
CTACCTCCTGCTCATGCAGACGTTGCGCGCACCCCTCCAACATCGTGTCC
TTACATTtagtctccttctcccagcgCCTAACTTCATCTGTAAGTTCCTG
CACCTGTGTGGATAGGCTGGCCACTGTGAACTTCTTTCTCGCCAATTCGT
CGCGCATGCGCGCCCCCTGACGTTCAAGGAGGAATTTTTCTGTTGATGCT
ATCTCGGCTTGCGCTGCAAACGTTTCCTTCTCAATGGCCGAggccccttc
cttgtcgtgACTGCCCGTGTACCTTCTAGATGTCCTGGAAACATCGAGGT
CCGGCTCATTCATTGATGGGTGATCGTCCGACGCGAGGCTAGAAGCGGGA
CTTCCGCGGTGGCGACGTTTGAACAGGCGTGCCAGCATCCTTGACGGAAG
GGACAATTTCTAATTGATAACTCCCTCGAAAGGTGCCAGACCCTGTGCCA
GTGTATACAATGAGCATATATAACACTTTAAATTGGCTCAGCGTACAAGG
CGACGGCGCGCCCTTGCATGTGAAGCTGCCAGACGTGGGTTCAGGGGCTT
GGCGACGCGGAGCAGTATGAACATCCCACATCCGGACAAGAGATATTAAG
AATGACTTTATAAGATGCTCCGACCCCGGTCCAACCTTCACGGCAACTCC
GTTGGTGCGTGCACACATCTGTCCGTCCCCGTCGCGAGCGACGGCCGGCG
AGCGATTGCGTGTGAGGGGCATGGCCATCGCAGACGGAGTGCATGGTATC
ATCAGCGAGGGGAAAACCGAGCCCTCCACCGGGCACGTACTGCAAGCTTT
CCAGGTTCGCACCGAGTGGGGGAGCGTCAATGCGTTGCACAAGCAATGTG
AATGAATACATTTTTATGCTTCTATGAGAGAGCTTTTGGTGTGTAAGGCG
GCAAACACGTGTAGGAATGCCTTCTTGGAGGCATTTCGTATCCATCGCTG
CATGACTTGCCAAAGCTGGAAAATGCACGTGCCTCGGCGGCCTGCACGAG
CCTCACGGTGCCGACATGGCTTTTATGGATCTAAACTTGCCTCTATATTT
GTGCTTTGCGTACCCGCGCAGATTTGGGAGCGATCACAATTTTTATGAGC
GTCCAATTCCCTTCCTATTCTCAGCCCATCTCTTCATCAACTCTACAGGG
CCAAAGCGGCGATTGTCGCATTTTAAAATGATGGAACAGGCTTCCTGGTT
ACAAGAGCACTATTATGACGCTGATGGAGAGAGCAATCGCAGCAGTGCCA
ACAGCAGCATTGGTAGCTTGGGCGGCCTTCGCAGCTTTGACGttgaagga
agcggagggggaaacgcAGGAGAGCCTTCTTCATCTCGACGGGTTGTGAA
GGTCAGTGTCCTTGCTCGACTGCTGTATCTGTGGGGCGTATGAAATTATC
ACGTAGTCTGGAGATATGAGAGTGACGCTGCACCGGATATTTTTCAGTGC
AAGGCAAGCGCACACAGGTGCCTCAGCTTAGGATTGTGCCCTCCCCTGGC
TGCCCACTAAGGACTTGCAGCAGTGCATGATGCGCGACTCATTTTCCCCC
TGCCATGTACTTTGTGGGACACCTTGACCAGGGTGAGAGCGACCTGCGCG
CTATCAAGGCCCTTGTGCAGCAGTTGGCGGGCCCGTCCCTGCcgtcgctg
tcctcctccccgcttaCGTCAGAGCCGCTGCCCGCCagccgcagcaacag
cagcagccacagcagcagccccagaagcagccacagcagcagcctAGAGA
GCCTGGGCGCGGACAATGACGGGGCGCACGGCCACCACGGCAGTCTGAGT
GGCACCGACGGCGActcggagagggcgggggccagggccgtgggggcggg
aggcttcTTTCAAGACGTGGATTTGGAGGCCGGGGAGTCCCAGAGGTGGT
CTGATGCGGGTCCAAGCGGGCAGACGCAGGATGCGGATCGCACCCTTTGC
CTTATCTGTTACGAGGATTTTCCtctcgaggaggagccgcCCCGgctgcc
ccttcctgccctccacggccccccTGATCCCCCCACCAGGCCAAACATCC
CGCCCACCGCGCCCGCTCTCCCACCGCGCCCCTCGCCCAGACCCGCGTGC
CCGCATTCCTTCTGCCGAAAATGCGTGGTGGCCTACCTGGAGACTCGCAT
GCGGGAGGGGCGAACCGACTTTCCCTGTCCCATGCGGGGGGACGCGGACT
GCAGGCATGCCTTCaggtag back to topCoding sequence (CDS) from alignment at CM002467.1:313475..316494+ >rna5996 ID=rna5996|Name=rna5996|organism=Nannochloropsis gaditana|type=CDS|length=1950bp|location=Sequence derived from alignment at CM002467.1:313475..316494+ (Nannochloropsis gaditana)
ATGGCTTTTATGGATCTAAACTTGCCTCTATATTTGTGCTTTGCGTACCC
GCGCAGATTTGGGAGCGATCACAATTTTTATGAGCGTCCAATTCCCTTCC
TATTCTCAGCCCATCTCTTCATCAACTCTACAGGGCCAAAGCGGCGATTG
TCGCATTTTAAAATGATGGAACAGGCTTCCTGGTTACAAGAGCACTATTA
TGACGCTGATGGAGAGAGCAATCGCAGCAGTGCCAACAGCAGCATTGGTA
GCTTGGGCGGCCTTCGCAGCTTTGACGttgaaggaagcggagggggaaac
gcAGGAGAGCCTTCTTCATCTCGACGGGTTGTGAAGGGTGAGAGCGACCT
GCGCGCTATCAAGGCCCTTGTGCAGCAGTTGGCGGGCCCGTCCCTGCcgt
cgctgtcctcctccccgcttaCGTCAGAGCCGCTGCCCGCCagccgcagc
aacagcagcagccacagcagcagccccagaagcagccacagcagcagcct
AGAGAGCCTGGGCGCGGACAATGACGGGGCGCACGGCCACCACGGCAGTC
TGAGTGGCACCGACGGCGActcggagagggcgggggccagggccgtgggg
gcgggaggcttcTTTCAAGACGTGGATTTGGAGGCCGGGGAGTCCCAGAG
GTGGTCTGATGCGGGTCCAAGCGGGCAGACGCAGGATGCGGATCGCACCC
TTTGCCTTATCTGTTACGAGGATTTTCCtctcgaggaggagccgcCCCGg
ctgccccttcctgccctccacggccccccTGATCCCCCCACCAGGCCAAA
CATCCCGCCCACCGCGCCCGCTCTCCCACCGCGCCCCTCGCCCAGACCCG
CGTGCCCGCATTCCTTCTGCCGAAAATGCGTGGTGGCCTACCTGGAGACT
CGCATGCGGGAGGGGCGAACCGACTTTCCCTGTCCCATGCGGGGGGACGC
GGACTGCAGGCATGCCTTCaggtagATGGCTTTTATGGATCTAAACTTGC
CTCTATATTTGTGCTTTGCGTACCCGCGCAGATTTGGGAGCGATCACAAT
TTTTATGAGCGTCCAATTCCCTTCCTATTCTCAGCCCATCTCTTCATCAA
CTCTACAGGGCCAAAGCGGCGATTGTCGCATTTTAAAATGATGGAACAGG
CTTCCTGGTTACAAGAGCACTATTATGACGCTGATGGAGAGAGCAATCGC
AGCAGTGCCAACAGCAGCATTGGTAGCTTGGGCGGCCTTCGCAGCTTTGA
CGttgaaggaagcggagggggaaacgcAGGAGAGCCTTCTTCATCTCGAC
GGGTTGTGAAGGGTGAGAGCGACCTGCGCGCTATCAAGGCCCTTGTGCAG
CAGTTGGCGGGCCCGTCCCTGCcgtcgctgtcctcctccccgcttaCGTC
AGAGCCGCTGCCCGCCagccgcagcaacagcagcagccacagcagcagcc
ccagaagcagccacagcagcagcctAGAGAGCCTGGGCGCGGACAATGAC
GGGGCGCACGGCCACCACGGCAGTCTGAGTGGCACCGACGGCGActcgga
gagggcgggggccagggccgtgggggcgggaggcttcTTTCAAGACGTGG
ATTTGGAGGCCGGGGAGTCCCAGAGGTGGTCTGATGCGGGTCCAAGCGGG
CAGACGCAGGATGCGGATCGCACCCTTTGCCTTATCTGTTACGAGGATTT
TCCtctcgaggaggagccgcCCCGgctgccccttcctgccctccacggcc
ccccTGATCCCCCCACCAGGCCAAACATCCCGCCCACCGCGCCCGCTCTC
CCACCGCGCCCCTCGCCCAGACCCGCGTGCCCGCATTCCTTCTGCCGAAA
ATGCGTGGTGGCCTACCTGGAGACTCGCATGCGGGAGGGGCGAACCGACT
TTCCCTGTCCCATGCGGGGGGACGCGGACTGCAGGCATGCCTTCaggtag back to top
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