EWM24713.1, cds5981 (CDS) Nannochloropsis gaditana

Overview
NameEWM24713.1
Unique Namecds5981
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:315290..315625 +
Alignment locationCM002467.1:315856..316494 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24713.1
ProductZinc finger, RING-type, conserved site
Orig transcript idgnl|cribi|Naga_100076g1.8821.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:315290..315625 +
CM002467.1supercontigCM002467.1:315856..316494 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
Homology
[Close]
BLAST of EWM24713.1 vs. NCBI_GenBank
Match: gi|585106241|gb|EWM24713.1| (Zinc finger, RING-type, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 654.825 bits (1688), Expect = 0.000e+0
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0 
Query:    1 MAFMDLNLPLYLCFAYPRRFGSDHNFYERPIPFLFSAHLFINSTGPKRRLSHFKMMEQASWLQEHYYDADGESNRSSANSSIGSLGGLRSFDVEGSGGGNAGEPSSSRRVVKGESDLRAIKALVQQLAGPSLPSLSSSPLTSEPLPASRSNSSSHSSSPRSSHSSSLESLGADNDGAHGHHGSLSGTDGDSERAGARAVGAGGFFQDVDLEAGESQRWSDAGPSGQTQDADRTLCLICYEDFPLEEEPPRLPLPALHGPPDPPTRPNIPPTAPALPPRPSPRPACPHSFCRKCVVAYLETRMREGRTDFPCPMRGDADCRHAFR 324
            MAFMDLNLPLYLCFAYPRRFGSDHNFYERPIPFLFSAHLFINSTGPKRRLSHFKMMEQASWLQEHYYDADGESNRSSANSSIGSLGGLRSFDVEGSGGGNAGEPSSSRRVVKGESDLRAIKALVQQLAGPSLPSLSSSPLTSEPLPASRSNSSSHSSSPRSSHSSSLESLGADNDGAHGHHGSLSGTDGDSERAGARAVGAGGFFQDVDLEAGESQRWSDAGPSGQTQDADRTLCLICYEDFPLEEEPPRLPLPALHGPPDPPTRPNIPPTAPALPPRPSPRPACPHSFCRKCVVAYLETRMREGRTDFPCPMRGDADCRHAFR
Sbjct:    1 MAFMDLNLPLYLCFAYPRRFGSDHNFYERPIPFLFSAHLFINSTGPKRRLSHFKMMEQASWLQEHYYDADGESNRSSANSSIGSLGGLRSFDVEGSGGGNAGEPSSSRRVVKGESDLRAIKALVQQLAGPSLPSLSSSPLTSEPLPASRSNSSSHSSSPRSSHSSSLESLGADNDGAHGHHGSLSGTDGDSERAGARAVGAGGFFQDVDLEAGESQRWSDAGPSGQTQDADRTLCLICYEDFPLEEEPPRLPLPALHGPPDPPTRPNIPPTAPALPPRPSPRPACPHSFCRKCVVAYLETRMREGRTDFPCPMRGDADCRHAFR 324
[Close]
BLAST of EWM24713.1 vs. NCBI_GenBank
Match: gi|585106240|gb|EWM24712.1| (Zinc finger, RING-type, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 560.066 bits (1442), Expect = 0.000e+0
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0 
Query:   45 GPKRRLSHFKMMEQASWLQEHYYDADGESNRSSANSSIGSLGGLRSFDVEGSGGGNAGEPSSSRRVVKGESDLRAIKALVQQLAGPSLPSLSSSPLTSEPLPASRSNSSSHSSSPRSSHSSSLESLGADNDGAHGHHGSLSGTDGDSERAGARAVGAGGFFQDVDLEAGESQRWSDAGPSGQTQDADRTLCLICYEDFPLEEEPPRLPLPALHGPPDPPTRPNIPPTAPALPPRPSPRPACPHSFCRKCVVAYLETRMREGRTDFPCPMRGDADCRHAFR 324
            GPKRRLSHFKMMEQASWLQEHYYDADGESNRSSANSSIGSLGGLRSFDVEGSGGGNAGEPSSSRRVVKGESDLRAIKALVQQLAGPSLPSLSSSPLTSEPLPASRSNSSSHSSSPRSSHSSSLESLGADNDGAHGHHGSLSGTDGDSERAGARAVGAGGFFQDVDLEAGESQRWSDAGPSGQTQDADRTLCLICYEDFPLEEEPPRLPLPALHGPPDPPTRPNIPPTAPALPPRPSPRPACPHSFCRKCVVAYLETRMREGRTDFPCPMRGDADCRHAFR
Sbjct:   64 GPKRRLSHFKMMEQASWLQEHYYDADGESNRSSANSSIGSLGGLRSFDVEGSGGGNAGEPSSSRRVVKGESDLRAIKALVQQLAGPSLPSLSSSPLTSEPLPASRSNSSSHSSSPRSSHSSSLESLGADNDGAHGHHGSLSGTDGDSERAGARAVGAGGFFQDVDLEAGESQRWSDAGPSGQTQDADRTLCLICYEDFPLEEEPPRLPLPALHGPPDPPTRPNIPPTAPALPPRPSPRPACPHSFCRKCVVAYLETRMREGRTDFPCPMRGDADCRHAFR 343
The following BLAST results are available for this feature:
BLAST of EWM24713.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106241|gb|EWM24713.1|0.000e+0100.00Zinc finger, RING-type, conserved site [Nannochlor... [more]
gi|585106240|gb|EWM24712.1|0.000e+0100.00Zinc finger, RING-type, conserved site [Nannochlor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5996rna5996Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications