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Properties
| Property Name | Value |
|---|
| Product | Peptidase C54 |
| Orig transcript id | gnl|cribi|Naga_101405g1.8454.mrna |
| Orig protein id | gnl|cribi|Naga_101405g1.8454 |
| Gene | Atg4 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:171307..172445 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5944 ID=rna5944|Name=rna5944|organism=Nannochloropsis gaditana|type=mRNA|length=1381bp
CAAGTGAACTTATCTTGCATGTAATGCTCGTTCTTTGGCAGGTCTACAAA
CATGAGGATCATGTTCACTGGCCGTTACCCTGTTCTCGGTTACATGCCAC
AACCAATTTTCATATTCACACTCGTTGTCAGACATTTATGAAGAAACTGC
CGGCAAGCATGAGTACTGTTTCATCTCATCGTGATGTGATATACCTTAAT
CAAGTCTCCTCGTGTGGCACAAGACGATAACGTGGCAGCGTGGACGTCAT
ACTTCAGCCAGAGATAGCCTGGCGTCCCTTTCCGGACCTCAATAACTCTA
ACCCTCACACGCACATGTTTACCCACCAATGTCCCTTCTGTTCACATAAT
TTGTCACAGAGGCTATGCCTACATCCCTTCCCTCCCGTCCGCAATACGTT
CCCGTGTCTACCTGCCCCCTCTCAACCTCCTCCGCCCACACCGTCCGTCC
TAAGGAAATTGTTTTTGAATTGTTCCTTCCCCTCGCTCCTTTGTCTGCAG
CACGACGTGCTTCAGCGTCCTCGTCTTCCTCCCCTTCTTCCTCCGTGACG
GGCCGATGGATTTTAGGAAAACGCTACGATCCCGAAGACCTGGATGGATG
GACTCAGCATTTTCGCTCCATCCCTTGGTTCACCTACCGCCATACGTTCC
CGACAATGGCACCGTACCCTTACACCGATGATGCCGGATGGGGATGCATG
CTTCGTTCGGCCCAAATGATGATGGGGGAAGGGTTGTTGAGGTGCGAACG
GGGATGGAGGGGTGTACATGTGGAGACATAGCGGTCATTTTTCTATTCAA
GGAGGATGCATGACGGCGTGAATCGCTATGAGGAGGGCAATATTTGTAGC
TGGTTGCTTGTAATTTGACCAACATACAAGGAAAGTCCTGTAGACCAAAC
GTCTGGTGACAACCTCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTC
CGTTCCCCGTCGCTGGCTTTCCTCCGCAGGCATGTCTTTGGGAGCAACTG
GCGCGCACCACGGGACTTGGACGACCTGAAATCCAATCCTTTGTACTGTC
AGCTCTTGGACTCCTTCGTCGACGCACCAGGGCCCAACCACGTCTTCTCG
GTCCACAACATGGTTCAGATTGGCATGTCCTACGATAAGCTCCCTGGGGA
GTGGTACGGCCCCACCACTGTCGCCTACATCCTCCGGGACCTCGCCCTCC
TCCACCGCCGACAGCAGCAAGACGTGGAGGAGGAAGCGCACGCCTTGCAA
CCGTTACAGCCTTTACAAGCGTCACAACCGTTACAACCGTTACGTGCGAG
ATGTGCACCCGAGGATTCGCCGGTGCCACCCACGCCAGCGTCGGGGGAGA
ATAGGCAGGAAGGGCAAGAGAGGAGTGAAGG back to topprotein sequence of rna5944 >rna5944-protein ID=rna5944-protein|Name=rna5944|organism=Nannochloropsis gaditana|type=polypeptide|length=323bp
SSLPFDPLLHRPPSVVAADERAAAKALPPPFRPWREGEGAVLLIPLRCVR
FHVGRWLGVYVGLWMCVSGFGRTFPPCKHGHCLPPTEPCPPSLPSSVPSS
LSLPLSLCPYLLPSLSLGLASLNPDYIPGLLASLQIPHSLGFVGGRPHHA
IYFVGAEGGREGGREGGAVVGLDPHTVQVAPGPQGDGDQGGQGGREGGKE
GGGEGRKEGGREGGRRRYRPTDEHLRSVQCRTPAMMLAKDLDPSLALGFY
LRNEVDFQLFIQHVHALKDTLQRHRLPVPFSVEQAPPEYEGAMMQSLVEE
EEHRVEEEEEEEEEDLEDDYVVI back to topmRNA from alignment at CM002467.1:171307..172445+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5944 ID=rna5944|Name=rna5944|organism=Nannochloropsis gaditana|type=mRNA|length=1139bp|location=Sequence derived from alignment at CM002467.1:171307..172445+ (Nannochloropsis gaditana)
tcctccctccccttcgaccccctcctccatcgccctccctccgtcgttGC
CGCCGACGAACGCGCCGCCGCCAaagccctgcctcctcctttccgtccct
ggagggagggtgaaggcGCCGTCCTCCTGATCCCCCTACGGTGCGTGCGC
TTCCATGTGGGGAGGTGGCTCGGGGTGTATGTAGGTCTATGGATGTGCGT
ATCCGGGTTTGGTCGGacgttccctccctgcaaGCACGGTCATTGCCTTC
CGCCGACTGAaccgtgccctccctccctcccttcctcggtcccttcctcc
ctctccctccctctctccctctgtccctacctccttccctccctcagcct
aGGTCTAGCCTCCCTCAACCCTGACTATATTCCTGGccttcttgcctccc
tccaaatTCCTCACTCCCTCGGGTTCGTAGGGGGTAGACCCCATCATGCC
ATTTACTTCGtaggcgcggagggagggagggagggagggagggagggagg
ggcggtggtCGGTCTGGACCCGCACACGGTGCAAGTGGCGCCAGGGCCGC
AAGGAGACGGGGACcaagggggacaaggagggagggagggagggaaggag
ggagggggggagggaaggaaggagggagggagggagggagggaggcgaag
gtaCCGACCGACCGACGAACACCTTCGTTCCGTGCAATGCCGGACACCGG
CGATGATGCTCGCCAAAGACCTGGATCCTTCCTTGGCCTTGGGTTTCTAT
CTGCGAAATGAAGTGGATTTCCAGCTTTTTATTCAACATGTCCATGCCCT
GAAAGACACTTTGCAACGGCATCGTCTACCCGTCCCGTTTTCAGTGGAAC
AAGCGCCCCCAGAGTATGAAGGCGCCATGATGCAGAGCTtggtcgaagag
gaagaacatcgagtggaggaggaggaggaggaggaagaggaagaccttgA
GGATGATTATGTTGTAATATGACGGCGGAATGAAcgtggaaggaaagagc
aCGTCTGGTGGATCCCAGGGGTTCACGATAGGCAGGATGAAAGGGGTGCG
CGAACGAGAAGGAAATTTGTATAGCATGTCGAAACTAAGACAAGGCAATG
TAGAACGTCCTCACACCAGGAAAAATTAGTGTACTTATT back to topCoding sequence (CDS) from alignment at CM002467.1:171307..172445+ >rna5944 ID=rna5944|Name=rna5944|organism=Nannochloropsis gaditana|type=CDS|length=972bp|location=Sequence derived from alignment at CM002467.1:171307..172445+ (Nannochloropsis gaditana)
tcctccctccccttcgaccccctcctccatcgccctccctccgtcgttGC
CGCCGACGAACGCGCCGCCGCCAaagccctgcctcctcctttccgtccct
ggagggagggtgaaggcGCCGTCCTCCTGATCCCCCTACGGTGCGTGCGC
TTCCATGTGGGGAGGTGGCTCGGGGTGTATGTAGGTCTATGGATGTGCGT
ATCCGGGTTTGGTCGGacgttccctccctgcaaGCACGGTCATTGCCTTC
CGCCGACTGAaccgtgccctccctccctcccttcctcggtcccttcctcc
ctctccctccctctctccctctgtccctacctccttccctccctcagcct
aGGTCTAGCCTCCCTCAACCCTGACTATATTCCTGGccttcttgcctccc
tccaaatTCCTCACTCCCTCGGGTTCGTAGGGGGTAGACCCCATCATGCC
ATTTACTTCGtaggcgcggagggagggagggagggagggagggagggagg
ggcggtggtCGGTCTGGACCCGCACACGGTGCAAGTGGCGCCAGGGCCGC
AAGGAGACGGGGACcaagggggacaaggagggagggagggagggaaggag
ggagggggggagggaaggaaggagggagggagggagggagggaggcgaag
gtaCCGACCGACCGACGAACACCTTCGTTCCGTGCAATGCCGGACACCGG
CGATGATGCTCGCCAAAGACCTGGATCCTTCCTTGGCCTTGGGTTTCTAT
CTGCGAAATGAAGTGGATTTCCAGCTTTTTATTCAACATGTCCATGCCCT
GAAAGACACTTTGCAACGGCATCGTCTACCCGTCCCGTTTTCAGTGGAAC
AAGCGCCCCCAGAGTATGAAGGCGCCATGATGCAGAGCTtggtcgaagag
gaagaacatcgagtggaggaggaggaggaggaggaagaggaagaccttgA
GGATGATTATGTTGTAATATGA back to top
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