EWM24744.1, cds5929 (CDS) Nannochloropsis gaditana

Overview
NameEWM24744.1
Unique Namecds5929
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:171307..172278 +

Link to JBrowse

Properties
Property NameValue
Start range171307
Start range.
Protein idEWM24744.1
ProductPeptidase C54
Partialtrue
Orig transcript idgnl|cribi|Naga_101405g1.8454.mrna
GeneAtg4
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:171307..172278 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0009056catabolic process
GO:0019538protein metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR005078Peptidase_C54
Homology
BLAST of EWM24744.1 vs. NCBI_GenBank
Match: gi|585106288|gb|EWM24744.1| (Peptidase C54, partial [Nannochloropsis gaditana])

HSP 1 Score: 642.499 bits (1656), Expect = 0.000e+0
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0
Query:    1 SSLPFDPLLHRPPSVVAADERAAAKALPPPFRPWREGEGAVLLIPLRCVRFHVGRWLGVYVGLWMCVSGFGRTFPPCKHGHCLPPTEPCPPSLPSSVPSSLSLPLSLCPYLLPSLSLGLASLNPDYIPGLLASLQIPHSLGFVGGRPHHAIYFVGAEGGREGGREGGAVVGLDPHTVQVAPGPQGDGDQGGQGGREGGKEGGGEGRKEGGREGGRRRYRPTDEHLRSVQCRTPAMMLAKDLDPSLALGFYLRNEVDFQLFIQHVHALKDTLQRHRLPVPFSVEQAPPEYEGAMMQSLVEEEEHRVEEEEEEEEEDLEDDYVVI 323
            SSLPFDPLLHRPPSVVAADERAAAKALPPPFRPWREGEGAVLLIPLRCVRFHVGRWLGVYVGLWMCVSGFGRTFPPCKHGHCLPPTEPCPPSLPSSVPSSLSLPLSLCPYLLPSLSLGLASLNPDYIPGLLASLQIPHSLGFVGGRPHHAIYFVGAEGGREGGREGGAVVGLDPHTVQVAPGPQGDGDQGGQGGREGGKEGGGEGRKEGGREGGRRRYRPTDEHLRSVQCRTPAMMLAKDLDPSLALGFYLRNEVDFQLFIQHVHALKDTLQRHRLPVPFSVEQAPPEYEGAMMQSLVEEEEHRVEEEEEEEEEDLEDDYVVI
Sbjct:    1 SSLPFDPLLHRPPSVVAADERAAAKALPPPFRPWREGEGAVLLIPLRCVRFHVGRWLGVYVGLWMCVSGFGRTFPPCKHGHCLPPTEPCPPSLPSSVPSSLSLPLSLCPYLLPSLSLGLASLNPDYIPGLLASLQIPHSLGFVGGRPHHAIYFVGAEGGREGGREGGAVVGLDPHTVQVAPGPQGDGDQGGQGGREGGKEGGGEGRKEGGREGGRRRYRPTDEHLRSVQCRTPAMMLAKDLDPSLALGFYLRNEVDFQLFIQHVHALKDTLQRHRLPVPFSVEQAPPEYEGAMMQSLVEEEEHRVEEEEEEEEEDLEDDYVVI 323          
BLAST of EWM24744.1 vs. NCBI_GenBank
Match: gi|298712912|emb|CBJ33424.1| (Autophagy-related protein 4 [Ectocarpus siliculosus])

HSP 1 Score: 104.76 bits (260), Expect = 2.689e-21
Identity = 66/183 (36.07%), Postives = 90/183 (49.18%), Query Frame = 0
Query:  111 LLPSLSLGLASLNPDYIPGLLASLQIPHSLGFVGGRPHHAIYFVGAEGGREGGREGGAVVGLDPHTVQVAPGPQGDGDQGGQGGREGGKEGGGEGRKEGGREGGRRRYRPTDEHLRSVQCRTPAMMLAKDLDPSLALGFYLRNEVDFQLFIQHVHALKDTLQRHRLPVPFSVEQAPPEYEGAM 293
            LL  L LGL  L+  YIP LL +L++P SLGF+GGRP+HAI+F+GA        +G  + GLDPHT Q    P  D  +G                             P++ ++ S+ C++   M    +DPSLAL FYL +   F+  I+ +            P PFSVEQ  P+YEG M
Sbjct:  382 LLVPLRLGLDELSTGYIPSLLETLRVPQSLGFLGGRPNHAIFFIGA--------QGNTLTGLDPHTTQ----PAADMGEG----------------------------FPSERYVHSLHCQSAVSMDVHRIDPSLALAFYLPDRATFEDLIKRIGETN--------PPPFSVEQTRPDYEGEM 516          
BLAST of EWM24744.1 vs. NCBI_GenBank
Match: gi|219129924|ref|XP_002185127.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403306|gb|EEC43259.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 89.7373 bits (221), Expect = 3.172e-16
Identity = 61/204 (29.90%), Postives = 92/204 (45.10%), Query Frame = 0
Query:  120 ASLNPDYIPGLLASLQIPHSLGFVGGRPHHAIYFVGAEGGREGGREGGAVVGLDPHTVQVAPGPQGDGDQGGQGGREGGKEGGGEGRKEGGREGGRRRYRPTDEHLRSVQCRTPAMMLAKDLDPSLALGFYLRNEVDFQLFIQHVHALKDTLQRHRLPVPFSVEQAPPEYEGAMMQSLVEEEEHRVEEEEEEEEEDLEDDYVVI 323
             SLN +Y+  L  +  +P S+G +GGRP  A +F GA+      ++G  + GLDPHTVQ APG Q          R  G+                     +D++LRS     P M     +DPS+ALGFY R   D    +  + A +   +   +P  FSV    P+Y   +   L+  +   +E    E+E    D+YV++
Sbjct:  384 TSLNEEYVQSLAHTFSLPQSVGVLGGRPRGARWFYGAQ------KDGSKIFGLDPHTVQTAPGRQT--------ARVNGQASSV--------------VELSDDYLRSCHTTCPEMFPFCKMDPSIALGFYCRTRADLNHVLNSMGAWQK--EHSSIPELFSVLDRAPDYSANVDDLLLGGDSSMMETSGFEDEASDADEYVML 557          
BLAST of EWM24744.1 vs. NCBI_GenBank
Match: gi|926613004|ref|XP_013794781.1| (PREDICTED: cysteine protease ATG4B-like [Limulus polyphemus] >gi|926613006|ref|XP_013794782.1| PREDICTED: cysteine protease ATG4B-like [Limulus polyphemus])

HSP 1 Score: 87.4261 bits (215), Expect = 1.365e-15
Identity = 56/153 (36.60%), Postives = 69/153 (45.10%), Query Frame = 0
Query:  115 LSLGLASLNPDYIPGLLASLQIPHSLGFVGGRPHHAIYFVGAEGGREGGREGGAVVGLDPHTVQVAPGPQGDGDQGGQGGREGGKEGGGEGRKEGGREGGRRRYRPTDEHLRSVQCRTPAMMLAKDLDPSLALGFYLRNEVDFQLFIQHVHAL 267
            L LGL  +NP YI GL  +  +  SLG +GGRP+HA+YF+GA G          VV LDPHT Q  P    D D                               P+DE   S  C   + M    LDPS+AL FY R+E DF  +  HV+ L
Sbjct:  261 LRLGLTDINPLYIKGLKTTFTLKQSLGIIGGRPNHALYFIGAIGNE--------VVFLDPHTTQ--PATVLDTD------------------------------SPSDE---SYHCCYASRMDVSQLDPSIALCFYCRSEADFDNWCNHVYKL 370          
BLAST of EWM24744.1 vs. NCBI_GenBank
Match: gi|1210512575|dbj|GAX28432.1| (cysteine protease ATG4 [Fistulifera solaris])

HSP 1 Score: 85.1149 bits (209), Expect = 8.056e-15
Identity = 60/206 (29.13%), Postives = 91/206 (44.17%), Query Frame = 0
Query:  121 SLNPDYIPGLLASLQIPHSLGFVGGRPHHAIYFVGAEGGREGGREGGAVVGLDPHTVQVAPGPQGDGDQGGQGGREGGKEGGGEGRKEGGREGGRRRYRPTDEHLRSVQCRTPAMMLAKDLDPSLALGFYLRNEVDFQLFIQHVHALKDTLQRHRLPVPFSVEQAPPEYEG---AMMQSLVEEEEHRVEEEEEEEEEDLEDDYVVI 323
            + N DY+  L  +  +P S+G +GGRP  A YF GA        +G  + GLDPHTVQ AP             +       GE                +DE+LRS+    P  +  + +DPS+ LGFY  NE D Q   + V   K   +    P  F+     P+Y     + M+ ++      ++ EE++  +  EDDYV++
Sbjct:  298 TFNLDYVRALAHTFSLPQSVGVLGGRPRGARYFYGAFS------DGSKIFGLDPHTVQAAP-------------QRASVSINGELSS---------MIDLSDENLRSIHTAYPESISLEKMDPSITLGFYCENERDLQFIFESVQQWK--TENPGSPELFTTANYSPDYAANISSTMKKIMLSSSSLLDTEEDQISD--EDDYVML 471          
BLAST of EWM24744.1 vs. NCBI_GenBank
Match: gi|934155763|gb|KPM05940.1| (cysteine protease ATG4B-like protein [Sarcoptes scabiei])

HSP 1 Score: 83.1889 bits (204), Expect = 3.939e-14
Identity = 57/205 (27.80%), Postives = 88/205 (42.93%), Query Frame = 0
Query:  115 LSLGLASLNPDYIPGLLASLQIPHSLGFVGGRPHHAIYFVGAEGGREGGREGGAVVGLDPHTVQVAPGPQGDGDQGGQGGREGGKEGGGEG-RKEGGREGGRRRYRPTDEHLRSVQCRTPAMMLAKDLDPSLALGFYLRNEVDFQLFIQHVHALKDTLQRHRLPVPFSVEQAPPEYEGA---MMQSLVEEEEHRVEEEEEEEEED 315
            L LGLA +NP Y   L  +   P +LG +GGRP+HA+YF+G             ++ LDPHT Q +     D  +  +  RE  ++   +  R E   +              S  C  P  +   ++DPSL+L F+ + E DF    Q  +     L R   P+ F +    P+Y G    M  S +  E+  + + E   + D
Sbjct:  289 LRLGLAEINPIYFKSLKTTFTFPQTLGILGGRPNHALYFIGC--------SDNDLIYLDPHTTQESVDLVDDLSEMLKTDRESIEDFSNDQPRNEFSDDF-------------SYHCDRPYRISINNIDPSLSLCFFCKTEEDFN---QWAYLCLHKLMREEQPL-FEMMNERPKYWGTNNDMNDSTIRTEKDELNDAERTNQID 468          
BLAST of EWM24744.1 vs. NCBI_GenBank
Match: gi|224010768|ref|XP_002294341.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969836|gb|EED88175.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 83.5741 bits (205), Expect = 4.431e-14
Identity = 78/259 (30.12%), Postives = 115/259 (44.40%), Query Frame = 0
Query:  118 GLASL-NPDYIPGLLASLQIPHSLGFVGGRPHHAIYFVGA----------EGGREGGREGGAVVGLDPHTVQVAPGPQGDGDQGGQGGREGGKEGGGEGRKEGGREGGRRRYRPTDEHLRSVQCRTPAMMLAK--------DLDPSLALGFYLRNEVDFQLFIQHVHAL-KDTLQRHRLPVPFSVEQAPPEYE---GAMMQSLV--------EEEEHRVEEEEEEE----------------------EEDLEDDYVVI 323
            G+ S+  P Y   L   L  P S+G +GG P HA++F GA          +G    G+E G   GLDPHT QVAP       +G +  + G  E   +  +       + + +  D +LRS+   TP    A          LDPS ALGFY+R+  DF  F   + AL K+  + ++LP   +V +  P YE   G++M++L+        E E  R +E   ++                      EED +DDYV+I
Sbjct:  411 GIQSIPTPTYGSTLAKLLSFPQSVGMLGGTPRHALWFYGADEVDPPTFGDDGKALNGQECGGWYGLDPHTTQVAP-------RGTRTTKYGKDEVSSDDIE---LNNCQWQVQLNDAYLRSLHF-TPTTTHANHQRSIPLSKLDPSCALGFYIRDHSDFVQFTNAIDALSKEHCRPNKLPDIVTVTEKTPNYEVDVGSVMKTLMLCGKGTTKEREGGRGDETCNDDCGGGSDNQLDGFSMDSEEGVLSEEDDDDDYVLI 658          
BLAST of EWM24744.1 vs. NCBI_GenBank
Match: gi|1173936891|gb|OQR87768.1| (cysteine protease family C54 [Achlya hypogyna])

HSP 1 Score: 82.0333 bits (201), Expect = 5.798e-14
Identity = 65/202 (32.18%), Postives = 88/202 (43.56%), Query Frame = 0
Query:   90 PPSLPSSVPSSLSLPLSLCPYLLPSLSLGLASLNPDYIPGLLASLQIPHSLGFVGGRPHHAIYFVGAEGGREGGREGGAVVGLDPHTVQVAPGPQGDGDQGGQGGREGGKEGGGEGRKEGGREGGRRRYRPTDEHLRSVQCRTPAMMLAKDLDPSLALGFYLRNEVDFQLFIQHVHALKDTLQRHRLPVPFSVEQAPPEYEG 291
            PP+L +S P S S+      ++L  L LGL  LN  YIP L A   +P SLG +GG+  H++YFVGA G +           LDPHTV     P  + D                               PT  H R+V      +M    +DPSLALGFY R+  ++      + AL    + H  PV  +V +A P+Y  
Sbjct:  195 PPTLDTSAPWSKSV------FILVPLRLGLDKLNEAYIPALTAVFALPQSLGIIGGKRGHSVYFVGARGHQFH--------ILDPHTVH----PTTEVDDSF----------------------------PTATHARTVHSTDHLVMEVDYIDPSLALGFYCRDRSEYADLCARLAALS---REHMCPV--TVAEAKPDYTN 345          
BLAST of EWM24744.1 vs. NCBI_GenBank
Match: gi|857977420|emb|CEO96818.1| (hypothetical protein PBRA_005422 [Plasmodiophora brassicae])

HSP 1 Score: 77.7962 bits (190), Expect = 1.602e-12
Identity = 57/213 (26.76%), Postives = 89/213 (41.78%), Query Frame = 0
Query:  111 LLPSLSLGLASLNPDYIPGLLASLQIPHSLGFVGGRPHHAIYFVGAEGGREGGREGGAVVGLDPHTVQVAPGPQGDGDQGGQGGREGGKEGGGEGRKEGGREGGRRRYRPTDEHLRSVQCRTPAMMLAKDLDPSLALGFYLRNEVDFQLFIQHVHALKDTLQRHRLPVPFSVEQAPPEYEGAMMQSLVEEEEHRVEEEEEEEEEDLEDDYVVI 323
            +L  L LGL  LNP Y+  LL  + +P SLGF+GGRP  ++YFVG +G +        ++ LDPHT+    G     D+  +    GG     +                    + +  CR    M+   LDP LALGFY+ +        + +  +K        P  F +    P +             HR   + + E+E  +DD+V++
Sbjct:  189 VLVPLRLGLDDLNPIYMESLLQMMTLPQSLGFIGGRPRSSLYFVGFQGRK--------LLYLDPHTIHDHVGDVTSADENVRFSTGGGGVACADDACV------------PHPQVSTFCCRECRTMMIDQLDPCLALGFYVASADSLDDMWRRLQGMKS-------PTGFDIGDRAPVW-------------HRPASDTQAEQETDDDDFVLL 361          
BLAST of EWM24744.1 vs. NCBI_GenBank
Match: gi|802672592|gb|KKA67055.1| (Peptidase [Pristionchus pacificus])

HSP 1 Score: 75.0998 bits (183), Expect = 2.102e-11
Identity = 58/192 (30.21%), Postives = 89/192 (46.35%), Query Frame = 0
Query:  111 LLPSLSLGLASLNPDYIPGLLASLQIPHSLGFVGGRPHHAIYFVGAEGGREGGREGGAVVGLDPHTVQ-----VAPGPQGDGDQGGQGGREGGKEG-GGEGRKEG-----GREGGRRRYRPTDEHLRSVQCRTPAMMLAKDLDPSLALGFYLRNEVDFQLFIQHVHALKD--TLQRHRLPVPFSVEQAPPEY 289
            +L  L LGL + NP Y+  + A  ++P  +G +GGRP+HA+YFVG +  +        ++ LDPH  Q      A     + D     G E   E   G G +E      G +G             +  C T   M  KD+DPSLALGF+ RN+ +++   +    LK+       + PV   +E+ PP++
Sbjct:  229 VLIPLRLGLTTTNPLYLRAIQAYFKLPQCVGILGGRPNHALYFVGIKDDK--------LIYLDPHYTQNTLTRSASCASFEKDASIDDGFERATEAVDGMGEEESAWDEPGCDG-------------TFHCPTLLWMDYKDVDPSLALGFFCRNKEEYEDLARR---LKEGAMATEEKFPVFEHIEKRPPKW 396          
The following BLAST results are available for this feature:
BLAST of EWM24744.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106288|gb|EWM24744.1|0.000e+0100.00Peptidase C54, partial [Nannochloropsis gaditana][more]
gi|298712912|emb|CBJ33424.1|2.689e-2136.07Autophagy-related protein 4 [Ectocarpus siliculosu... [more]
gi|219129924|ref|XP_002185127.1|3.172e-1629.90predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|926613004|ref|XP_013794781.1|1.365e-1536.60PREDICTED: cysteine protease ATG4B-like [Limulus p... [more]
gi|1210512575|dbj|GAX28432.1|8.056e-1529.13cysteine protease ATG4 [Fistulifera solaris][more]
gi|934155763|gb|KPM05940.1|3.939e-1427.80cysteine protease ATG4B-like protein [Sarcoptes sc... [more]
gi|224010768|ref|XP_002294341.1|4.431e-1430.12predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1173936891|gb|OQR87768.1|5.798e-1432.18cysteine protease family C54 [Achlya hypogyna][more]
gi|857977420|emb|CEO96818.1|1.602e-1226.76hypothetical protein PBRA_005422 [Plasmodiophora b... [more]
gi|802672592|gb|KKA67055.1|2.102e-1130.21Peptidase [Pristionchus pacificus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5944rna5944Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications