rna5856, rna5856 (mRNA) Nannochloropsis gaditana

Overview
Namerna5856
Unique Namerna5856
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1084
Alignment locationCM002466.1:1000742..1002730 -

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Properties
Property NameValue
Productadp-ribosylation factor
Orig transcript idgnl|cribi|Naga_100234g3.1036.mrna
Orig protein idgnl|cribi|Naga_100234g3.1036
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:1000742..1002730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100234g3gene5652Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5856rna5856-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24832.1cds5841Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5856 ID=rna5856|Name=rna5856|organism=Nannochloropsis gaditana|type=mRNA|length=1084bp
CTTGTCAATTATCCCACCAGCTATTTCCACCAACATGGCTCCCTTTTACC
CTTTTCGAACGTTCACAGCATTAAAAAAATATGGGACAGCTCATGACGCG
GGTCCTTGACGTCCTTTGGGGCAAAGAAGACAGACGTTTGTTGATGCTGG
GCCTCGACGCGGCGGGAAAGACCACCATCCTCTACCGCCTCCAGCTGGGC
GAGGACGTGCACTCCATCCCCACGATCGGGTTCAACGTTGAGAAAGTCGA
GTATCGGAATATTTCGTTCACAATTTGGGACGTTGGAGGTCAAGATCGCT
TGCGAAAGCTATGGCGGCACTACTACAAGGACAACGACGCCCTCATCTTC
GTCATCGATTCTGCCGACCGCGCGCGCCTGCACGAGGCGCGGTCCGAACT
CCACCACTTGCTCTCTGAGCCCCAGCTCCTGGACTCCATCCTCCTTGTCT
ACGCCAACAAGGCAGATTTACCGCAGGCGATTTCCGTGCAAGAAATGGCG
CGGCTGTTGCAATTAGACAATGTCGCCAAGGGCAGGCCATGGTACATTCA
ACCTTCGTGCGCAATGACCGGTGACGGCCTGGTCGAGGGCCTGGACTGGC
TCTCCGAGAAACTCAAGGAGGTGGGCTCTCACACGTATCACGGGATCAGA
CAGGACGAGACGATCCAGCCGGCAGCTGCCTTTAGACCGGCCGCGGGCTC
GTTGGAAGGGCCTGCGGGGGGGGGATGGTAGGAGCGGAAGGAGGACAGGA
GGAAGGGAGGGAGGATGTGCGGTAGGAGGACGCGAGGGAGGGTGGAAGGA
GGGCAGGAACCAGTTTGCCCCGCCGCCTGGAGCGATGAGGGTTCAGGGGG
GCGAGTGGTTGGGAGGAAAGCGAGAGGACGTGCACCTGGCGGTGGCCGAG
TGTGGTTTGGGGCTGTTGGGTTTGCTGGGGGAGGCTTCTGTGTCGATAGA
AGGAGGGAGAGAAGGCGGCGGAGGGATCGGGGGCGGGGGGAGGGGGAAGG
ACCCACAACAGAAGCGTACAACATAGACAGGGCGAGCGTCGGGAAGGGGA
CCGACAGAAAGCTGACAGAAATAATTCATGTTGA
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protein sequence of rna5856

>rna5856-protein ID=rna5856-protein|Name=rna5856|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIG
FNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARL
HEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVGA
LLEGGREEGKGYRDVDRDADHYLREDEGSLVMLCRPLDELTLCIV
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mRNA from alignment at CM002466.1:1000742..1002730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5856 ID=rna5856|Name=rna5856|organism=Nannochloropsis gaditana|type=mRNA|length=1989bp|location=Sequence derived from alignment at CM002466.1:1000742..1002730- (Nannochloropsis gaditana)
CTTGTCAATTATCCCACCAGCTATTTCCACCAACATGGCTCCCTTTTACC
CTTTTCGAACGTTCACAGCATTAAAAAAATATGGGACAGCTCATGACGCG
GGTCCTTGACGTCCTTTGGGGCAAAGAAGACAGGTAAATGACACAAAAAC
CTAGAAGGGAGGAGACTGGGGAGGCTTGAGGTACCTCCTACCAGTACGGG
ACTAAAACCCCCGTGTGCCGGGGACAGACACCTGAAAATAATCATTGTGT
ACGTCTACCCCCAAAAATCAACGACAGACGTTTGTTGATGCTGGGCCTCG
ACGCGGCGGGAAAGACCACCATCCTCTACCGCCTCCAGCTGGGCGAGGAC
GTGCACTCCATCCCCACGATCGGGTAGGTCGACATAGGCAGTGGCCCCTG
CCGCGTGACAGCGAGTGAAAATCATGCTATGAATTACATGTTTTACGAGT
GTGCTTATGCAGCTAATGGCAATGGTCCGTGCATTGCAGTCGCCGCCTTA
CCGTGACTGTACCGCTCAGGGTCTTGCTTGATCTAGGCTCCTGCCCCCTT
GCCTAACCCATCCTCTTGCATCGACCACCCTGCTAGGTTCAACGTTGAGA
AAGTCGAGTATCGGAATATTTCGTTCACAATTTGGGACGTTGGAGGTCAA
GATCGCTTGCGAAAGTAGGTGCAGATGGAAAGGGAGGAAAAGGGGAGGCA
AAAAAGAGGGCGGGAAGGAAGCCGGTCGGTATTTGTTCTCGAACATTCAC
ATTTCTTCTCAATCTAGGCTATGGCGGCACTACTACAAGGACAACGACGC
CCTCATCTTCGTCATCGATTCTGCCGACCGCGCGCGCCTGCACGAGGCGC
GGTCCGAACTCCACCACTTGCTCTCTGAGCCCCAGCTCCTGGACTCCATC
CTCCTTGTCTACGCCAACAAGGCAGATTTACCGCAGGCGATTTCCGTGCA
AGAAATGGCGCGGCTGTTGCAATTAGACAATGTAGGGGCTCTTTTGGAGG
GAGGGAGGGAGGAAGGGAAAGGATACAGAGATGTGGACAGAGACGCGGAC
CATTATTTGAGAGAGGATGAAGGCTCCCTTGTGATGCTTTGTCGGCCGCT
TGATGAGCTCACTCTGTGTATTGTTTAGTCCCATTGACTGCTTTGAACTG
GATTTTGACTCCCCTCTCGCCGGCCTCCCCGTGCCCTCCAACCCTTTCCT
GCCCCCCTCTCCCCGTCCCGCCCTCCCTCCCTCCTCCCCTCCGCCTCCCC
AGGTCGCCAAGGGCAGGCCATGGTACATTCAACCTTCGTGCGCAATGACC
GGTGACGGCCTGGTCGAGGGCCTGGACTGGCTCTCCGAGAAACTCAAGGC
GCGTCAAGGGCCCTCCCCGCCCCTCCCTCTCTCCCCCCCTCCGTCCCTCC
CTCCTTCCCGTCCTCCCAGATCCTCACACTTTCCTATGCGTTGGATTGAC
GGGTCTCTTTCCTCCTGTCTTGTCTTTGTGGCCTCCCTCTGACTCTTTCT
CTCTGTCTCTGTTTCTTGACAGGAGGTGGGCTCTCACACGTATCACGGGA
TCAGACAGGACGAGACGATCCAGCCGGCAGCTGCCTTTAGACCGGCCGCG
GGCTCGTTGGAAGGGCCTGCGGGGGGGGGATGGTAGGAGCGGAAGGAGGA
CAGGAGGAAGGGAGGGAGGATGTGCGGTAGGAGGACGCGAGGGAGGGTGG
AAGGAGGGCAGGAACCAGTTTGCCCCGCCGCCTGGAGCGATGAGGGTTCA
GGGGGGCGAGTGGTTGGGAGGAAAGCGAGAGGACGTGCACCTGGCGGTGG
CCGAGTGTGGTTTGGGGCTGTTGGGTTTGCTGGGGGAGGCTTCTGTGTCG
ATAGAAGGAGGGAGAGAAGGCGGCGGAGGGATCGGGGGCGGGGGGAGGGG
GAAGGACCCACAACAGAAGCGTACAACATAGACAGGGCGAGCGTCGGGAA
GGGGACCGACAGAAAGCTGACAGAAATAATTCATGTTGA
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Coding sequence (CDS) from alignment at CM002466.1:1000742..1002730-

>rna5856 ID=rna5856|Name=rna5856|organism=Nannochloropsis gaditana|type=CDS|length=2352bp|location=Sequence derived from alignment at CM002466.1:1000742..1002730- (Nannochloropsis gaditana)
GCTATGGCGGCACTACTACAAGGACAACGACGCCCTCATCTTCGTCATCG
ATTCTGCCGACCGCGCGCGCCTGCACGAGGCGCGGTCCGAACTCCACCAC
TTGCTCTCTGAGCCCCAGCTCCTGGACTCCATCCTCCTTGTCTACGCCAA
CAAGGCAGATTTACCGCAGGCGATTTCCGTGCAAGAAATGGCGCGGCTGT
TGCAATTAGACAATGTAGGGGCTCTTTTGGAGGGAGGGAGGGAGGAAGGG
AAAGGATACAGAGATGTGGACAGAGACGCGGACCATTATTTGAGAGAGGA
TGAAGGCTCCCTTGTGATGCTTTGTCGGCCGCTTGATGAGCTCACTCTGT
GTATTGTTTAGGTTCAACGTTGAGAAAGTCGAGTATCGGAATATTTCGTT
CACAATTTGGGACGTTGGAGGTCAAGATCGCTTGCGAAAACGTTTGTTGA
TGCTGGGCCTCGACGCGGCGGGAAAGACCACCATCCTCTACCGCCTCCAG
CTGGGCGAGGACGTGCACTCCATCCCCACGATCGGATGGGACAGCTCATG
ACGCGGGTCCTTGACGTCCTTTGGGGCAAAGAAGACAGGCTATGGCGGCA
CTACTACAAGGACAACGACGCCCTCATCTTCGTCATCGATTCTGCCGACC
GCGCGCGCCTGCACGAGGCGCGGTCCGAACTCCACCACTTGCTCTCTGAG
CCCCAGCTCCTGGACTCCATCCTCCTTGTCTACGCCAACAAGGCAGATTT
ACCGCAGGCGATTTCCGTGCAAGAAATGGCGCGGCTGTTGCAATTAGACA
ATGTAGGGGCTCTTTTGGAGGGAGGGAGGGAGGAAGGGAAAGGATACAGA
GATGTGGACAGAGACGCGGACCATTATTTGAGAGAGGATGAAGGCTCCCT
TGTGATGCTTTGTCGGCCGCTTGATGAGCTCACTCTGTGTATTGTTTAGG
TTCAACGTTGAGAAAGTCGAGTATCGGAATATTTCGTTCACAATTTGGGA
CGTTGGAGGTCAAGATCGCTTGCGAAAACGTTTGTTGATGCTGGGCCTCG
ACGCGGCGGGAAAGACCACCATCCTCTACCGCCTCCAGCTGGGCGAGGAC
GTGCACTCCATCCCCACGATCGGATGGGACAGCTCATGACGCGGGTCCTT
GACGTCCTTTGGGGCAAAGAAGACAGGCTATGGCGGCACTACTACAAGGA
CAACGACGCCCTCATCTTCGTCATCGATTCTGCCGACCGCGCGCGCCTGC
ACGAGGCGCGGTCCGAACTCCACCACTTGCTCTCTGAGCCCCAGCTCCTG
GACTCCATCCTCCTTGTCTACGCCAACAAGGCAGATTTACCGCAGGCGAT
TTCCGTGCAAGAAATGGCGCGGCTGTTGCAATTAGACAATGTAGGGGCTC
TTTTGGAGGGAGGGAGGGAGGAAGGGAAAGGATACAGAGATGTGGACAGA
GACGCGGACCATTATTTGAGAGAGGATGAAGGCTCCCTTGTGATGCTTTG
TCGGCCGCTTGATGAGCTCACTCTGTGTATTGTTTAGGTTCAACGTTGAG
AAAGTCGAGTATCGGAATATTTCGTTCACAATTTGGGACGTTGGAGGTCA
AGATCGCTTGCGAAAACGTTTGTTGATGCTGGGCCTCGACGCGGCGGGAA
AGACCACCATCCTCTACCGCCTCCAGCTGGGCGAGGACGTGCACTCCATC
CCCACGATCGGATGGGACAGCTCATGACGCGGGTCCTTGACGTCCTTTGG
GGCAAAGAAGACAGGCTATGGCGGCACTACTACAAGGACAACGACGCCCT
CATCTTCGTCATCGATTCTGCCGACCGCGCGCGCCTGCACGAGGCGCGGT
CCGAACTCCACCACTTGCTCTCTGAGCCCCAGCTCCTGGACTCCATCCTC
CTTGTCTACGCCAACAAGGCAGATTTACCGCAGGCGATTTCCGTGCAAGA
AATGGCGCGGCTGTTGCAATTAGACAATGTAGGGGCTCTTTTGGAGGGAG
GGAGGGAGGAAGGGAAAGGATACAGAGATGTGGACAGAGACGCGGACCAT
TATTTGAGAGAGGATGAAGGCTCCCTTGTGATGCTTTGTCGGCCGCTTGA
TGAGCTCACTCTGTGTATTGTTTAGGTTCAACGTTGAGAAAGTCGAGTAT
CGGAATATTTCGTTCACAATTTGGGACGTTGGAGGTCAAGATCGCTTGCG
AAAACGTTTGTTGATGCTGGGCCTCGACGCGGCGGGAAAGACCACCATCC
TCTACCGCCTCCAGCTGGGCGAGGACGTGCACTCCATCCCCACGATCGGA
TGGGACAGCTCATGACGCGGGTCCTTGACGTCCTTTGGGGCAAAGAAGAC
AG
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Synonyms
Publications