EWM24832.1, cds5841 (CDS) Nannochloropsis gaditana

Overview
NameEWM24832.1
Unique Namecds5841
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:1002598..1002650 -
Alignment locationCM002466.1:1002358..1002453 -
Alignment locationCM002466.1:1002067..1002144 -
Alignment locationCM002466.1:1001603..1001963 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24832.1
Productadp-ribosylation factor
Orig transcript idgnl|cribi|Naga_100234g3.1036.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:1002598..1002650 -
CM002466.1supercontigCM002466.1:1002358..1002453 -
CM002466.1supercontigCM002466.1:1002067..1002144 -
CM002466.1supercontigCM002466.1:1001603..1001963 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0007165signal transduction
GO:0006886intracellular protein transport
GO:0007264small GTPase mediated signal transduction
GO:0015031protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR006687Small_GTPase_SAR1
IPR003579Small_GTPase_Rab_type
IPR006689Small_GTPase_ARF/SAR
Homology
BLAST of EWM24832.1 vs. NCBI_GenBank
Match: gi|585106428|gb|EWM24832.1| (adp-ribosylation factor [Nannochloropsis gaditana])

HSP 1 Score: 393.275 bits (1009), Expect = 1.778e-138
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVGALLEGGREEGKGYRDVDRDADHYLREDEGSLVMLCRPLDELTLCIV 195
            MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVGALLEGGREEGKGYRDVDRDADHYLREDEGSLVMLCRPLDELTLCIV
Sbjct:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVGALLEGGREEGKGYRDVDRDADHYLREDEGSLVMLCRPLDELTLCIV 195          
BLAST of EWM24832.1 vs. NCBI_GenBank
Match: gi|585106427|gb|EWM24831.1| (adp-ribosylation factor [Nannochloropsis gaditana])

HSP 1 Score: 298.901 bits (764), Expect = 8.333e-101
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVG 149
            MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNV 
Sbjct:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVA 149          
BLAST of EWM24832.1 vs. NCBI_GenBank
Match: gi|585106430|gb|EWM24834.1| (adp-ribosylation factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 227.254 bits (578), Expect = 8.180e-73
Identity = 115/149 (77.18%), Postives = 128/149 (85.91%), Query Frame = 0
Query:    1 MGQLMTRVLDVL---WGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLD 146
            MG L++RVLD L    GK+++R+LMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVE V Y+NI FTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADR R  EA++EL  LLSE QL  S +LV+ANKADLP AI V E+A+LLQLD
Sbjct:    1 MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLD 149          
BLAST of EWM24832.1 vs. NCBI_GenBank
Match: gi|576696292|gb|EUB59848.1| (ADP-ribosylation factor [Echinococcus granulosus] >gi|674266172|emb|CDI98679.1| ADP-ribosylation factor family [Echinococcus multilocularis])

HSP 1 Score: 199.519 bits (506), Expect = 5.567e-62
Identity = 91/148 (61.49%), Postives = 121/148 (81.76%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNV 148
            MG L TR+ D L+GK++ R+LM+GLDAAGKTTILY+L+LGE V +IPTIGFNVE VEY+N++FT+WDVGGQD++R LWRHY+++   LIFV+DS DR RL EAR+EL+ +LSE +L D++LLV+ANK DLP A    EM + L L+++
Sbjct:    1 MGALFTRLFDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVNFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERLVEARNELNRMLSEDELRDAVLLVFANKQDLPNACPASEMTQKLGLNSL 148          
BLAST of EWM24832.1 vs. NCBI_GenBank
Match: gi|209876175|ref|XP_002139530.1| (ADP-ribosylation factor 1 [Cryptosporidium muris RN66] >gi|209555136|gb|EEA05181.1| ADP-ribosylation factor 1, putative [Cryptosporidium muris RN66] >gi|1098430061|gb|OII77910.1| ADP-ribosylation factor 1 [Cryptosporidium andersoni])

HSP 1 Score: 198.364 bits (503), Expect = 1.304e-61
Identity = 92/148 (62.16%), Postives = 119/148 (80.41%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNV 148
            MG  +T++   L+GK+D R+LM+GLDAAGKTTILY+L+LGE V +IPTIGFNVE VEY+NISFT+WDVGGQD++R LWRHYY + D LIFV+DS DR R+++AR EL  +LSE +L D+ LLV+ANK DLP A+S  ++   LQL N+
Sbjct:    1 MGLALTKIWRNLFGKKDMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERINDARDELARMLSEDELRDAALLVFANKQDLPNAMSATDVTEKLQLSNI 148          
BLAST of EWM24832.1 vs. NCBI_GenBank
Match: gi|1102622923|emb|CRG99070.1| (ADP-ribosylation factor, putative [Plasmodium relictum])

HSP 1 Score: 196.823 bits (499), Expect = 6.225e-61
Identity = 89/148 (60.14%), Postives = 120/148 (81.08%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNV 148
            MG  ++R+ + L+ K+D R+LM+GLDAAGKTTILY+++LGE V +IPTIGFNVE VE+RNISFT+WDVGGQD++R LWRHYY + D LIFV+DS DR R+ +AR ELH +++E +L D+I+LV+ANK DLP A+S  E+   LQL+ +
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLQLNTI 148          
BLAST of EWM24832.1 vs. NCBI_GenBank
Match: gi|1098422398|gb|OII70755.1| (ARF1 2 like small GTPase [Cryptosporidium ubiquitum])

HSP 1 Score: 196.823 bits (499), Expect = 7.166e-61
Identity = 91/148 (61.49%), Postives = 118/148 (79.73%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNV 148
            MG  +T++   L+GK+D R+LM+GLDAAGKTTILY+L+LGE V +IPTIGFNVE VEY+NISFT+WDVGGQD++R LWRHYY + D LIFVIDS DR R+++AR EL  +L E +L D++LLV+ANK DLP A+S  ++   LQL  +
Sbjct:    1 MGLALTKIWRNLFGKKDMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVIDSNDRERINDARDELARMLGEDELRDAVLLVFANKQDLPNAMSATDITEKLQLSGI 148          
BLAST of EWM24832.1 vs. NCBI_GenBank
Match: gi|1194444258|dbj|GAW79911.1| (ADP-ribosylation factor [Plasmodium gonderi])

HSP 1 Score: 196.438 bits (498), Expect = 8.003e-61
Identity = 89/148 (60.14%), Postives = 120/148 (81.08%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNV 148
            MG L++R+ + L+ K+D R+LM+GLDAAGKTTILY+++LGE V +IPTIGFNVE VE+RNISFT+WDVGGQD++R LWRHYY + D LIFV+DS DR R+ +AR ELH +++E +L D+I+LV+ANK DLP A+S  E+   L L+ +
Sbjct:    1 MGLLISRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTI 148          
BLAST of EWM24832.1 vs. NCBI_GenBank
Match: gi|82541272|ref|XP_724888.1| (ADP-ribosylation factor [Plasmodium yoelii yoelii 17XNL] >gi|669201307|ref|XP_008625651.1| ADP-ribosylation factor 1 [Plasmodium vinckei vinckei] >gi|1027949549|ref|XP_016655155.1| ADP-ribosylation factor, putative [Plasmodium chabaudi chabaudi] >gi|23479696|gb|EAA16453.1| ADP-ribosylation factor [Plasmodium yoelii yoelii] >gi|564277595|gb|ETB59017.1| ADP-ribosylation factor 1 [Plasmodium yoelii 17X] >gi|577146725|gb|EUD69871.1| ADP-ribosylation factor 1 [Plasmodium vinckei petteri] >gi|657008123|gb|KEG01196.1| ADP-ribosylation factor 1 [Plasmodium vinckei vinckei] >gi|675219333|emb|CDS45834.1| ADP-ribosylation factor, putative [Plasmodium chabaudi chabaudi] >gi|675225239|emb|CDS45177.1| ADP-ribosylation factor, putative [Plasmodium berghei ANKA] >gi|675230884|emb|CDU16650.1| ADP-ribosylation factor, putative [Plasmodium yoelii] >gi|675236100|emb|CDZ11181.1| ADP-ribosylation factor, putative [Plasmodium yoelii] >gi|991454471|emb|CXI07858.1| ADP-ribosylation factor, putative [Plasmodium berghei] >gi|1049459533|emb|SBT76042.1| ADP-ribosylation factor, putative [Plasmodium ovale] >gi|1061781081|emb|SCL92654.1| ADP-ribosylation factor, putative [Plasmodium berghei] >gi|1061786087|emb|SCL99094.1| ADP-ribosylation factor, putative [Plasmodium chabaudi chabaudi] >gi|1061790903|emb|SCM02559.1| ADP-ribosylation factor, putative [Plasmodium chabaudi adami] >gi|1063415358|emb|SCN22859.1| ADP-ribosylation factor, putative [Plasmodium berghei] >gi|1068919126|emb|SCL99985.1| ADP-ribosylation factor, putative [Plasmodium chabaudi chabaudi] >gi|1068923862|emb|SCM07337.1| ADP-ribosylation factor, putative [Plasmodium chabaudi adami] >gi|1068928550|emb|SCM15687.1| ADP-ribosylation factor, putative [Plasmodium berghei] >gi|1068933182|emb|SCM17481.1| ADP-ribosylation factor, putative [Plasmodium berghei] >gi|1070686373|emb|SCP03840.1| ADP-ribosylation factor, putative [Plasmodium ovale])

HSP 1 Score: 196.438 bits (498), Expect = 8.927e-61
Identity = 89/148 (60.14%), Postives = 120/148 (81.08%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNV 148
            MG L++R+ + L+ K+D R+LM+GLDAAGKTTILY+++LGE V +IPTIGFNVE VE+RNISFT+WDVGGQD++R LWRHYY + D LIFV+DS DR R+ +AR ELH +++E +L D+I+LV+ANK DLP A+S  E+   L L+ +
Sbjct:    1 MGLLVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTI 148          
BLAST of EWM24832.1 vs. NCBI_GenBank
Match: gi|66358980|ref|XP_626668.1| (ARF1/2 like small GTpase [Cryptosporidium parvum Iowa II] >gi|46228393|gb|EAK89292.1| ARF1/2 like small GTpase [Cryptosporidium parvum Iowa II])

HSP 1 Score: 196.438 bits (498), Expect = 1.104e-60
Identity = 91/148 (61.49%), Postives = 118/148 (79.73%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNV 148
            MG  +T++   L+GK+D R+LM+GLDAAGKTTILY+L+LGE V +IPTIGFNVE VEY+NISFT+WDVGGQD++R LWRHYY + D LIFVIDS DR R+++AR EL  +L E +L D++LLV+ANK DLP A+S  ++   LQL  +
Sbjct:    7 MGLALTKIWRNLFGKKDMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVIDSNDRERINDARDELARMLGEDELRDAVLLVFANKQDLPNAMSATDITEKLQLSGI 154          
The following BLAST results are available for this feature:
BLAST of EWM24832.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106428|gb|EWM24832.1|1.778e-138100.00adp-ribosylation factor [Nannochloropsis gaditana][more]
gi|585106427|gb|EWM24831.1|8.333e-10199.33adp-ribosylation factor [Nannochloropsis gaditana][more]
gi|585106430|gb|EWM24834.1|8.180e-7377.18adp-ribosylation factor 1 [Nannochloropsis gaditan... [more]
gi|576696292|gb|EUB59848.1|5.567e-6261.49ADP-ribosylation factor [Echinococcus granulosus] ... [more]
gi|209876175|ref|XP_002139530.1|1.304e-6162.16ADP-ribosylation factor 1 [Cryptosporidium muris R... [more]
gi|1102622923|emb|CRG99070.1|6.225e-6160.14ADP-ribosylation factor, putative [Plasmodium reli... [more]
gi|1098422398|gb|OII70755.1|7.166e-6161.49ARF1 2 like small GTPase [Cryptosporidium ubiquitu... [more]
gi|1194444258|dbj|GAW79911.1|8.003e-6160.14ADP-ribosylation factor [Plasmodium gonderi][more]
gi|82541272|ref|XP_724888.1|8.927e-6160.14ADP-ribosylation factor [Plasmodium yoelii yoelii ... [more]
gi|66358980|ref|XP_626668.1|1.104e-6061.49ARF1/2 like small GTpase [Cryptosporidium parvum I... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5856rna5856Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications