rna5830, rna5830 (mRNA) Nannochloropsis gaditana

Overview
Namerna5830
Unique Namerna5830
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1228
Alignment locationCM002466.1:950048..951469 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100381g5.8977.mrna
Orig protein idgnl|cribi|Naga_100381g5.8977
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:950048..951469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100381g5gene5629Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5830rna5830-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24862.1cds5815Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5830 ID=rna5830|Name=rna5830|organism=Nannochloropsis gaditana|type=mRNA|length=1228bp
TCCGCCCCTACAGACGTGGACAACGCCCGCCCCTCATGTCGGAAGAGTCC
ATGCCCTTGGATACGCGCTTCAACGAGGTGGAGGGAGGCCAAGACTTGTA
CCCGGATGAGAAGGGGGTGTGGAATCTGGTGGAGGAGGGGGAGATGAAGG
TGAGGGGAGGAAGGAGGGAGGCGGAGGAGGTCCCGCGGGGATACTGACCG
CATCGATGGCGCATTGGAACGGTGCACTTGAAATGAATATCGATGATAAA
CAACTCCATTATCGATGGCAAACAAAGTCAACGTTGATGGCAAACAAAGT
CAACATTGATGGCAAACAAAGTCAACATTGATGGCAAACAAAATAAATCC
AACAGTAATGGCGAAAATCTTTGATTGTGATGGCAAATAGAGTCACCATC
AATATTGAACAAAGTCAACAGTAATGACAAACAGCTCTTCCCCCTGAAAC
AGGTGCAAGCGGCGCCCATGGTCCACACGGTGCCATGCGTAGGCTTCGTC
GTGACCGAGAAGGACAAGCCAGGGCGACTGCGTGCAGAGTACGTTCGGCC
CATCGTGGAACGTAACAAGGCCGGTCTCCTTGAACAGGGACTGAGCGACC
CCAACAAGATCTTCCGCCTCTTGAAGACTCTCCAGCCCGGGGAGGCAGTC
AACCTCCCCGACGGGACTTTGCTCCGGGCGGAGGAGGTAATGGAGGCGGC
GAAACAGGGCCGTAAAATCGTCATCTGCGGAGACACCTCCGACGCCTCAG
GGATCGCCGCGCTGGCACAGGATTGCGACGTGCTCGTCCATGAAGCGACC
AACGCTTTCTTGCTGCCTTTCGATAAGGGCACCTACATGGATGTGGAACG
ATTTGCCCGGGCCCATGGTCATTCCACGCCACAGATGGCCGGTCATTTCG
CGCACCGGGTCAGAGCCAAACGGTTGATCATGACGCACTTTAGCCCCCGT
TACAAAGGTGACTTGAGCCCCGAGAGCCTCGCCATTATGAAACGCTTGGA
AGACATGGCGCGCAAGACTTCGAAACTCCGGGCGGACCGAGTCTTGGCCG
CACATGATTTGATGCTCGTGCCCATCCCATCGCCACATAAAATGGCGGAA
GTGGGAGCCGATGACTAAGCTTGAAAGCACGAGGAAAGGCAGCAACTTAG
GTCTTCGTTGTTTAGAGCAAATAAACATGGCGGGTTAACACGCCACACAA
AGTAAAGTAACTTACAAGTTGGAGTCTC
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protein sequence of rna5830

>rna5830-protein ID=rna5830-protein|Name=rna5830|organism=Nannochloropsis gaditana|type=polypeptide|length=259bp
MSEESMPLDTRFNEVEGGQDLYPDEKGVWNLVEEGEMKVQAAPMVHTVPC
VGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQP
GEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLV
HEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTH
FSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPH
KMAEVGADD
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mRNA from alignment at CM002466.1:950048..951469-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5830 ID=rna5830|Name=rna5830|organism=Nannochloropsis gaditana|type=mRNA|length=1422bp|location=Sequence derived from alignment at CM002466.1:950048..951469- (Nannochloropsis gaditana)
CAGACGTGGACAACGCCCGCCCCTCATGTCGGAAGAGTCCATGCCCTTGG
ATACGCGCTTCAACGAGGTGGAGGGAGGCCAAGACTTGTACCCGGATGAG
AAGGGGGTGTGGAATCTGGTGGAGGAGGGGGAGATGAAGGTGAGGGGAGG
AAGGAGGGAGGCGGAGGAGGTCCCGCGGGGATACTGACCGCATCGATGGC
GCATTGGAACGGTGCACTTGAAATGAATATCGATGATAAACAACTCCATT
ATCGATGGCAAACAAAGTCAACGTTGATGGCAAACAAAGTCAACATTGAT
GGCAAACAAAGTCAACATTGATGGCAAACAAAATAAATCCAACAGTAATG
GCGAAAATCTTTGATTGTGATGGCAAATAGAGTCACCATCAATATTGAAC
AAAGTCAACAGTAATGACAAACAGCTCTTCCCCCTGAAACAGGTGCAAGC
GGCGCCCATGGTCCACACGGTGCCATGCGTAGGCTTCGTCGTGACCGAGA
AGGACAAGCCAGGGCGACTGCGTGCAGGTAAGGAGGACGTCCGGCAAGGA
CCTGGAAAGGGATCTAAAGGGGGTCTCTTCCTTTCTTGGTGTCGCCATTG
GCAGGGGCCCAGCTGTCGTGACCGTTACATTCAAAGGTTCAAAATGATCC
TTGGAACGCCATGGCTGACCCCCCCGACTTGCCCCTCCATTTCCATCACT
CTTTCCCTCGGATCCCTCCCCCACACCACAGAGTACGTTCGGCCCATCGT
GGAACGTAACAAGGCCGGTCTCCTTGAACAGGGACTGAGCGACCCCAACA
AGATCTTCCGCCTCTTGAAGACTCTCCAGCCCGGGGAGGCAGTCAACCTC
CCCGACGGGACTTTGCTCCGGGCGGAGGAGGTAATGGAGGCGGCGAAACA
GGGCCGTAAAATCGTCATCTGCGGAGACACCTCCGACGCCTCAGGGATCG
CCGCGCTGGCACAGGATTGCGACGTGCTCGTCCATGAAGCGACCAACGCT
TTCTTGCTGCCTTTCGATAAGGGCACCTACATGGATGTGGAACGATTTGC
CCGGGCCCATGGTCATTCCACGCCACAGATGGCCGGTCATTTCGCGCACC
GGGTCAGAGCCAAACGGTTGATCATGACGCACTTTAGCCCCCGTTACAAA
GGTGACTTGAGCCCCGAGAGCCTCGCCATTATGAAACGCTTGGAAGACAT
GGCGCGCAAGACTTCGAAACTCCGGGCGGACCGAGTCTTGGCCGCACATG
ATTTGATGCTCGTGCCCATCCCATCGCCACATAAAATGGCGGAAGTGGGA
GCCGATGACTAAGCTTGAAAGCACGAGGAAAGGCAGCAACTTAGGTCTTC
GTTGTTTAGAGCAAATAAACATGGCGGGTTAACACGCCACACAAAGTAAA
GTAACTTACAAGTTGGAGTCTC
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Coding sequence (CDS) from alignment at CM002466.1:950048..951469-

>rna5830 ID=rna5830|Name=rna5830|organism=Nannochloropsis gaditana|type=CDS|length=2340bp|location=Sequence derived from alignment at CM002466.1:950048..951469- (Nannochloropsis gaditana)
AGTACGTTCGGCCCATCGTGGAACGTAACAAGGCCGGTCTCCTTGAACAG
GGACTGAGCGACCCCAACAAGATCTTCCGCCTCTTGAAGACTCTCCAGCC
CGGGGAGGCAGTCAACCTCCCCGACGGGACTTTGCTCCGGGCGGAGGAGG
TAATGGAGGCGGCGAAACAGGGCCGTAAAATCGTCATCTGCGGAGACACC
TCCGACGCCTCAGGGATCGCCGCGCTGGCACAGGATTGCGACGTGCTCGT
CCATGAAGCGACCAACGCTTTCTTGCTGCCTTTCGATAAGGGCACCTACA
TGGATGTGGAACGATTTGCCCGGGCCCATGGTCATTCCACGCCACAGATG
GCCGGTCATTTCGCGCACCGGGTCAGAGCCAAACGGTTGATCATGACGCA
CTTTAGCCCCCGTTACAAAGGTGACTTGAGCCCCGAGAGCCTCGCCATTA
TGAAACGCTTGGAAGACATGGCGCGCAAGACTTCGAAACTCCGGGCGGAC
CGAGTCTTGGCCGCACATGATTTGATGCTCGTGCCCATCCCATCGCCACA
TAAAATGGCGGAAGTGGGAGCCGATGACTAAGTGCAAGCGGCGCCCATGG
TCCACACGGTGCCATGCGTAGGCTTCGTCGTGACCGAGAAGGACAAGCCA
GGGCGACTGCGTGCAGATGTCGGAAGAGTCCATGCCCTTGGATACGCGCT
TCAACGAGGTGGAGGGAGGCCAAGACTTGTACCCGGATGAGAAGGGGGTG
TGGAATCTGGTGGAGGAGGGGGAGATGAAGAGTACGTTCGGCCCATCGTG
GAACGTAACAAGGCCGGTCTCCTTGAACAGGGACTGAGCGACCCCAACAA
GATCTTCCGCCTCTTGAAGACTCTCCAGCCCGGGGAGGCAGTCAACCTCC
CCGACGGGACTTTGCTCCGGGCGGAGGAGGTAATGGAGGCGGCGAAACAG
GGCCGTAAAATCGTCATCTGCGGAGACACCTCCGACGCCTCAGGGATCGC
CGCGCTGGCACAGGATTGCGACGTGCTCGTCCATGAAGCGACCAACGCTT
TCTTGCTGCCTTTCGATAAGGGCACCTACATGGATGTGGAACGATTTGCC
CGGGCCCATGGTCATTCCACGCCACAGATGGCCGGTCATTTCGCGCACCG
GGTCAGAGCCAAACGGTTGATCATGACGCACTTTAGCCCCCGTTACAAAG
GTGACTTGAGCCCCGAGAGCCTCGCCATTATGAAACGCTTGGAAGACATG
GCGCGCAAGACTTCGAAACTCCGGGCGGACCGAGTCTTGGCCGCACATGA
TTTGATGCTCGTGCCCATCCCATCGCCACATAAAATGGCGGAAGTGGGAG
CCGATGACTAAGTGCAAGCGGCGCCCATGGTCCACACGGTGCCATGCGTA
GGCTTCGTCGTGACCGAGAAGGACAAGCCAGGGCGACTGCGTGCAGATGT
CGGAAGAGTCCATGCCCTTGGATACGCGCTTCAACGAGGTGGAGGGAGGC
CAAGACTTGTACCCGGATGAGAAGGGGGTGTGGAATCTGGTGGAGGAGGG
GGAGATGAAGAGTACGTTCGGCCCATCGTGGAACGTAACAAGGCCGGTCT
CCTTGAACAGGGACTGAGCGACCCCAACAAGATCTTCCGCCTCTTGAAGA
CTCTCCAGCCCGGGGAGGCAGTCAACCTCCCCGACGGGACTTTGCTCCGG
GCGGAGGAGGTAATGGAGGCGGCGAAACAGGGCCGTAAAATCGTCATCTG
CGGAGACACCTCCGACGCCTCAGGGATCGCCGCGCTGGCACAGGATTGCG
ACGTGCTCGTCCATGAAGCGACCAACGCTTTCTTGCTGCCTTTCGATAAG
GGCACCTACATGGATGTGGAACGATTTGCCCGGGCCCATGGTCATTCCAC
GCCACAGATGGCCGGTCATTTCGCGCACCGGGTCAGAGCCAAACGGTTGA
TCATGACGCACTTTAGCCCCCGTTACAAAGGTGACTTGAGCCCCGAGAGC
CTCGCCATTATGAAACGCTTGGAAGACATGGCGCGCAAGACTTCGAAACT
CCGGGCGGACCGAGTCTTGGCCGCACATGATTTGATGCTCGTGCCCATCC
CATCGCCACATAAAATGGCGGAAGTGGGAGCCGATGACTAAGTGCAAGCG
GCGCCCATGGTCCACACGGTGCCATGCGTAGGCTTCGTCGTGACCGAGAA
GGACAAGCCAGGGCGACTGCGTGCAGATGTCGGAAGAGTCCATGCCCTTG
GATACGCGCTTCAACGAGGTGGAGGGAGGCCAAGACTTGTACCCGGATGA
GAAGGGGGTGTGGAATCTGGTGGAGGAGGGGGAGATGAAG
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Synonyms
Publications