EWM24862.1, cds5815 (CDS) Nannochloropsis gaditana

Overview
NameEWM24862.1
Unique Namecds5815
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:951331..951444 -
Alignment locationCM002466.1:950943..951027 -
Alignment locationCM002466.1:950158..950738 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24862.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100381g5.8977.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:951331..951444 -
CM002466.1supercontigCM002466.1:950943..951027 -
CM002466.1supercontigCM002466.1:950158..950738 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR001279Beta-lactamas-like
Homology
BLAST of EWM24862.1 vs. NCBI_GenBank
Match: gi|585106472|gb|EWM24862.1| (hypothetical protein Naga_100381g5 [Nannochloropsis gaditana])

HSP 1 Score: 535.028 bits (1377), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query:    1 MSEESMPLDTRFNEVEGGQDLYPDEKGVWNLVEEGEMKVQAAPMVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD 259
            MSEESMPLDTRFNEVEGGQDLYPDEKGVWNLVEEGEMKVQAAPMVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD
Sbjct:    1 MSEESMPLDTRFNEVEGGQDLYPDEKGVWNLVEEGEMKVQAAPMVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD 259          
BLAST of EWM24862.1 vs. NCBI_GenBank
Match: gi|585106473|gb|EWM24863.1| (hypothetical protein Naga_100381g5 [Nannochloropsis gaditana])

HSP 1 Score: 444.506 bits (1142), Expect = 3.267e-157
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query:   44 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD 259
            MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD
Sbjct:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD 216          
BLAST of EWM24862.1 vs. NCBI_GenBank
Match: gi|553179576|ref|XP_005852722.1| (ribonuclease Z [Nannochloropsis gaditana CCMP526] >gi|422295812|gb|EKU23111.1| ribonuclease Z [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 442.58 bits (1137), Expect = 1.603e-156
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 0
Query:   44 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD 259
            MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIA LAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD
Sbjct:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAVLAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD 216          
BLAST of EWM24862.1 vs. NCBI_GenBank
Match: gi|1210529699|dbj|GAX11793.1| (ribonuclease Z [Fistulifera solaris])

HSP 1 Score: 254.218 bits (648), Expect = 4.216e-80
Identity = 132/256 (51.56%), Postives = 173/256 (67.58%), Query Frame = 0
Query:    1 MSEESMPLDTRFNEVEGGQDLYP--------DEKGVWNLVEEGEMKVQAAPMVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGT-YMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIP 247
            MS E  P    F+EVEGG+++YP        D   VW + +EG++KV AAPM H +PCVG+VV E  +PGRL+ EYV PIV+RN A L + G   P K   ++K L PG A   PDGT++  E+ +EA +QGRK+VICGDT+D+  +  LA + DV++HEATNA+L   DK T + +V R A AHGHSTPQ+AG F+  V  KRLI+ HFS RYKGD+S +SL+IM R+E  A K S L   +V AA DLM++PIP
Sbjct:   98 MSLEPSPF---FSEVEGGRNIYPIYNHPRSYDGAPVWEVEDEGDVKVFAAPMSHGIPCVGYVVEELSRPGRLKNEYVEPIVKRNIAALKKAGFRAPMKAMAVIKNLPPGGAFTFPDGTVVTHEDAVEAPRQGRKVVICGDTADSRALRGLALNADVIIHEATNAYLQGVDKDTSFREVTRDAIAHGHSTPQIAGAFSKAVNGKRLILNHFSARYKGDVSVDSLSIMMRIEMQAMKASGLNETQVAAAWDLMVLPIP 350          
BLAST of EWM24862.1 vs. NCBI_GenBank
Match: gi|1210520429|dbj|GAX20860.1| (ribonuclease Z [Fistulifera solaris])

HSP 1 Score: 252.677 bits (644), Expect = 2.184e-77
Identity = 131/256 (51.17%), Postives = 170/256 (66.41%), Query Frame = 0
Query:    1 MSEESMPLDTRFNEVEGGQDLYP--------DEKGVWNLVEEGEMKVQAAPMVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGT-YMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIP 247
            MS E  P    F+EVEGG+ +YP        D   VW + +EG++KV AAPM H +PCVG+VV E  +PGRL+ EYV PIV+RN A L + G   P K   ++K L PG A   PDGT++  E+ +EA +QGRK+VICGDT+D+  +  LA + DV++HEATNA+L   DK T + +V R A  HGHSTPQ+AG F   V  KRLI+ HFS RYKGD+S +SL+IM R+E  A K S L   +V AA DLM++PIP
Sbjct:  275 MSLEPSPF---FSEVEGGRSIYPIYNHPRSYDGAPVWEVEDEGDVKVFAAPMSHGIPCVGYVVEELSRPGRLKNEYVEPIVKRNIAALKQAGFKAPMKAMAVIKNLPPGGAFTFPDGTVVTHEDAVEAPRQGRKVVICGDTADSRALRGLALNADVIIHEATNAYLQGVDKDTSFREVTRDAITHGHSTPQIAGAFCKAVNGKRLILNHFSARYKGDVSVDSLSIMMRIEMQAMKASGLNETQVAAAWDLMVLPIP 527          
BLAST of EWM24862.1 vs. NCBI_GenBank
Match: gi|224013026|ref|XP_002295165.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969127|gb|EED87469.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 248.825 bits (634), Expect = 9.370e-75
Identity = 124/245 (50.61%), Postives = 163/245 (66.53%), Query Frame = 0
Query:   12 FNEVEGGQDLYP--------DEKGVWNLVEEGEMKVQAAPMVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDK-GTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIP 247
            F E+EGG+D+YP        D   VW + ++ ++ V AAPM H VPCVG+V+ E D+PGRL+ E V P++ERN AGL+E G+  P K+  ++K L  G +   PDGT+++ E+V+E  ++GRK+VICGDT+D  G+  LAQ  DVLVHEATN FL   DK G    V R A+ HGHSTP MAG FA R+ AK+L++ HFS RYKGD S ES+ IM R+E  A K S L    V  A D M++PIP
Sbjct:  410 FGEIEGGRDIYPRYDHPQCHDGAPVWEVEKDSDVSVYAAPMSHGVPCVGYVIEEHDRPGRLQPENVLPVIERNHAGLIEAGVRHPMKVMAMVKNLPVGGSYTFPDGTVVKQEDVVEPPRKGRKVVICGDTADCRGLEGLAQGADVLVHEATNTFLPGVDKDGDLRGVTRDAKIHGHSTPFMAGEFAKRIGAKKLVLNHFSARYKGDQSIESMTIMTRMERQAMKASGLPETSVACAWDYMILPIP 654          
BLAST of EWM24862.1 vs. NCBI_GenBank
Match: gi|397647606|gb|EJK77775.1| (hypothetical protein THAOC_00370, partial [Thalassiosira oceanica])

HSP 1 Score: 248.44 bits (633), Expect = 3.049e-73
Identity = 121/252 (48.02%), Postives = 172/252 (68.25%), Query Frame = 0
Query:    5 SMPLDTR-FNEVEGGQDLYP--------DEKGVWNLVEEGEMKVQAAPMVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDK-GTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPI 246
            S+P  +R F E +GG+D+YP            +W +  E ++ V AAPM H+VPCVG+VVTE+DKPGRL+ E V P+++RN+ GL++ G+ +P K+  ++K+L  G + + PDGT++  E+V+E  ++GRKI ICGDT++   +A+LAQD DVL+HEATN FL   DK G      R A+ HGHSTP MAG FA R+ AK+LI+ HFS RYKGD S +S+ IM R+E  A K ++L  D V A+ D M++P+
Sbjct:  571 SLPQSSRDFGEQDGGRDIYPRYDHPKCSGGAPIWEVEVEDDVCVHAAPMSHSVPCVGYVVTEQDKPGRLKPENVLPVIDRNRQGLIDAGIRNPMKVMAMVKSLPVGGSYSFPDGTIINQEDVVEPPRRGRKIAICGDTANCRALASLAQDADVLIHEATNTFLPGVDKDGDLRGASRDAKIHGHSTPHMAGEFARRINAKKLILNHFSARYKGDQSIDSMTIMTRIEKQAMKAAQLPEDCVAASWDFMVLPL 822          
BLAST of EWM24862.1 vs. NCBI_GenBank
Match: gi|1001612028|gb|KXS15794.1| (Metallo-hydrolase/oxidoreductase [Gonapodya prolifera JEL478])

HSP 1 Score: 204.912 bits (520), Expect = 2.299e-60
Identity = 112/236 (47.46%), Postives = 148/236 (62.71%), Query Frame = 0
Query:   18 GQDLYPDEKGVWNLVEEGEM--KVQAAPMVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDK--GTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSP 249
            G ++     G W L+ +  +   V+AAPM HTVPCVG+ + E D PGRL+ E +RP++E     +   G++ P    RLL  ++ G+ V LPDGT+L AE  +E  K+GR +V+ GDTSD+S IA LA+ C VLVHEATNA L    K   T   VE+  + HGHSTP++AGHFA  V A+RLI+THFS RYKGD +PES+ +M  +  +A K      D VL A DLM V I  P
Sbjct:  164 GDNILARSDGTWMLLRDDALGVTVKAAPMCHTVPCVGYSLREHDGPGRLKVEELRPLIEAQADAIRASGVAQP---LRLLSEVKAGKKVTLPDGTVLEAERFVEEPKRGRHVVVLGDTSDSSQIAKLARGCTVLVHEATNACLEDDLKNGATPESVEQLTKEHGHSTPELAGHFAKDVDAQRLILTHFSNRYKGDEAPESMRVMDDIRALAVKA--FGKDDVLTARDLMTVAIQRP 394          
BLAST of EWM24862.1 vs. NCBI_GenBank
Match: gi|219128782|ref|XP_002184584.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404034|gb|EEC43983.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 187.963 bits (476), Expect = 4.023e-55
Identity = 95/198 (47.98%), Postives = 130/198 (65.66%), Query Frame = 0
Query:   17 GGQDLYP--------DEKGVWNLVEEGEMKVQAAPMVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYM-DVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRY 205
            GG+++YP        D   +W + +E ++KV AAPM H +PC+G+VV E  +PGRLR E V PIV+RN   L E G + P K   +LK L PG A   PDGT+++ E+ +E  ++GRK+VI GDT+D   +  LAQ+ D+++HEATN +L   DK T + +V R A  HGHSTPQ+AG FA  V AKRL++ HFS RY
Sbjct:   87 GGRNIYPQYDHPLCADGAPMWEIEDEEDVKVYAAPMSHGIPCLGYVVDELPRPGRLRNEVVEPIVKRNVQALREAGFTVPMKAMAVLKNLPPGNAFTFPDGTVVQQEDAVEPPREGRKVVIGGDTADCRALRNLAQNADLVIHEATNCYLQGVDKDTDVREVTRDAVMHGHSTPQIAGDFARSVNAKRLVLNHFSARY 284          
BLAST of EWM24862.1 vs. NCBI_GenBank
Match: gi|857979929|emb|CEO94587.1| (hypothetical protein PBRA_000372 [Plasmodiophora brassicae])

HSP 1 Score: 184.111 bits (466), Expect = 1.237e-52
Identity = 101/233 (43.35%), Postives = 144/233 (61.80%), Query Frame = 0
Query:   18 GQDLYPDEKGVWNLVEEGEMKVQAAPMVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQ-GLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKG--TYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIP 247
            GQD+   E GVW +     + V AAP+ H +  VGFV+TE D PGR+  E + PI++ +  GL +  G+  P     LL +L+ G++++LPDGT+LR E+ +   + GR++ I GDT ++S IA LA   D+L+HEATNAFL   D G  T   VE    +HGHSTPQMAG FA  + A  L++ HFS RYKGD +P+SLA+M  +  +A       + +V+ A D M +P+P
Sbjct:  146 GQDIV-MESGVWRVCHSDGVSVTAAPLQHRIESVGFVLTEDDTPGRVMIEKIEPILKAHAPGLCQAYGVRTP---MALLPSLKSGQSIDLPDGTVLRPEDFLHPKRPGRRLAILGDTCESSAIAPLAMGADLLIHEATNAFLQS-DSGVTTAAVVEEQCVSHGHSTPQMAGAFATSISAGALVLNHFSSRYKGDDAPDSLAVMDEIRALA--AGAFPSGKVVCARDFMSIPVP 371          
The following BLAST results are available for this feature:
BLAST of EWM24862.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106472|gb|EWM24862.1|0.000e+0100.00hypothetical protein Naga_100381g5 [Nannochloropsi... [more]
gi|585106473|gb|EWM24863.1|3.267e-157100.00hypothetical protein Naga_100381g5 [Nannochloropsi... [more]
gi|553179576|ref|XP_005852722.1|1.603e-15699.54ribonuclease Z [Nannochloropsis gaditana CCMP526] ... [more]
gi|1210529699|dbj|GAX11793.1|4.216e-8051.56ribonuclease Z [Fistulifera solaris][more]
gi|1210520429|dbj|GAX20860.1|2.184e-7751.17ribonuclease Z [Fistulifera solaris][more]
gi|224013026|ref|XP_002295165.1|9.370e-7550.61predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397647606|gb|EJK77775.1|3.049e-7348.02hypothetical protein THAOC_00370, partial [Thalass... [more]
gi|1001612028|gb|KXS15794.1|2.299e-6047.46Metallo-hydrolase/oxidoreductase [Gonapodya prolif... [more]
gi|219128782|ref|XP_002184584.1|4.023e-5547.98predicted protein, partial [Phaeodactylum tricornu... [more]
gi|857979929|emb|CEO94587.1|1.237e-5243.35hypothetical protein PBRA_000372 [Plasmodiophora b... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5830rna5830Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications