rna5829, rna5829 (mRNA) Nannochloropsis gaditana

Overview
Namerna5829
Unique Namerna5829
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length300
Alignment locationCM002466.1:950048..951479 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100381g5.8978.mrna
Orig protein idgnl|cribi|Naga_100381g5.8978
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:950048..951479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100381g5gene5629Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5829rna5829-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24863.1cds5814Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5829 ID=rna5829|Name=rna5829|organism=Nannochloropsis gaditana|type=mRNA|length=300bp
ATGGTTCCACAATTTGCACAAAGTACTTATGGCGACCTTCCTAGCGTGCA
AGACTATTCCTTCCTGGAATGCGTAAAAGTGGCGTTTTCGACGGTCTCCT
TTTACGTGCAAGACGCGTACGTATGGCTTGTCCTATTTTGGGAGTCCTTT
TCGGAGACGTACTCAGACCCAGCTTTTGAATTGCATCTTCAAATCCATAC
ATATATAAGTATTATGCATATTAATTCATTCGTTCCCGGCATTCTTGGTC
GCGCGGGTCTTGATAATTCAAAGTTTGATGGTACTCCTGATGACTGCTGA
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protein sequence of rna5829

>rna5829-protein ID=rna5829-protein|Name=rna5829|organism=Nannochloropsis gaditana|type=polypeptide|length=216bp
MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFR
LLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALA
QDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRA
KRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLML
VPIPSPHKMAEVGADD
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mRNA from alignment at CM002466.1:950048..951479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5829 ID=rna5829|Name=rna5829|organism=Nannochloropsis gaditana|type=mRNA|length=1432bp|location=Sequence derived from alignment at CM002466.1:950048..951479- (Nannochloropsis gaditana)
TCCGCCCCTACAGACGTGGACAACGCCCGCCCCTCATGTCGGAAGAGTCC
ATGCCCTTGGATACGCGCTTCAACGAGGTGGAGGGAGGCCAAGACTTGTA
CCCGGATGAGAAGGGGGTGTGGAATCTGGTGGAGGAGGGGGAGATGAAGG
TGAGGGGAGGAAGGAGGGAGGCGGAGGAGGTCCCGCGGGGATACTGACCG
CATCGATGGCGCATTGGAACGGTGCACTTGAAATGAATATCGATGATAAA
CAACTCCATTATCGATGGCAAACAAAGTCAACGTTGATGGCAAACAAAGT
CAACATTGATGGCAAACAAAGTCAACATTGATGGCAAACAAAATAAATCC
AACAGTAATGGCGAAAATCTTTGATTGTGATGGCAAATAGAGTCACCATC
AATATTGAACAAAGTCAACAGTAATGACAAACAGCTCTTCCCCCTGAAAC
AGGTGCAAGCGGCGCCCATGGTCCACACGGTGCCATGCGTAGGCTTCGTC
GTGACCGAGAAGGACAAGCCAGGGCGACTGCGTGCAGGTAAGGAGGACGT
CCGGCAAGGACCTGGAAAGGGATCTAAAGGGGGTCTCTTCCTTTCTTGGT
GTCGCCATTGGCAGGGGCCCAGCTGTCGTGACCGTTACATTCAAAGGTTC
AAAATGATCCTTGGAACGCCATGGCTGACCCCCCCGACTTGCCCCTCCAT
TTCCATCACTCTTTCCCTCGGATCCCTCCCCCACACCACAGAGTACGTTC
GGCCCATCGTGGAACGTAACAAGGCCGGTCTCCTTGAACAGGGACTGAGC
GACCCCAACAAGATCTTCCGCCTCTTGAAGACTCTCCAGCCCGGGGAGGC
AGTCAACCTCCCCGACGGGACTTTGCTCCGGGCGGAGGAGGTAATGGAGG
CGGCGAAACAGGGCCGTAAAATCGTCATCTGCGGAGACACCTCCGACGCC
TCAGGGATCGCCGCGCTGGCACAGGATTGCGACGTGCTCGTCCATGAAGC
GACCAACGCTTTCTTGCTGCCTTTCGATAAGGGCACCTACATGGATGTGG
AACGATTTGCCCGGGCCCATGGTCATTCCACGCCACAGATGGCCGGTCAT
TTCGCGCACCGGGTCAGAGCCAAACGGTTGATCATGACGCACTTTAGCCC
CCGTTACAAAGGTGACTTGAGCCCCGAGAGCCTCGCCATTATGAAACGCT
TGGAAGACATGGCGCGCAAGACTTCGAAACTCCGGGCGGACCGAGTCTTG
GCCGCACATGATTTGATGCTCGTGCCCATCCCATCGCCACATAAAATGGC
GGAAGTGGGAGCCGATGACTAAGCTTGAAAGCACGAGGAAAGGCAGCAAC
TTAGGTCTTCGTTGTTTAGAGCAAATAAACATGGCGGGTTAACACGCCAC
ACAAAGTAAAGTAACTTACAAGTTGGAGTCTC
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Coding sequence (CDS) from alignment at CM002466.1:950048..951479-

>rna5829 ID=rna5829|Name=rna5829|organism=Nannochloropsis gaditana|type=CDS|length=1302bp|location=Sequence derived from alignment at CM002466.1:950048..951479- (Nannochloropsis gaditana)
AGTACGTTCGGCCCATCGTGGAACGTAACAAGGCCGGTCTCCTTGAACAG
GGACTGAGCGACCCCAACAAGATCTTCCGCCTCTTGAAGACTCTCCAGCC
CGGGGAGGCAGTCAACCTCCCCGACGGGACTTTGCTCCGGGCGGAGGAGG
TAATGGAGGCGGCGAAACAGGGCCGTAAAATCGTCATCTGCGGAGACACC
TCCGACGCCTCAGGGATCGCCGCGCTGGCACAGGATTGCGACGTGCTCGT
CCATGAAGCGACCAACGCTTTCTTGCTGCCTTTCGATAAGGGCACCTACA
TGGATGTGGAACGATTTGCCCGGGCCCATGGTCATTCCACGCCACAGATG
GCCGGTCATTTCGCGCACCGGGTCAGAGCCAAACGGTTGATCATGACGCA
CTTTAGCCCCCGTTACAAAGGTGACTTGAGCCCCGAGAGCCTCGCCATTA
TGAAACGCTTGGAAGACATGGCGCGCAAGACTTCGAAACTCCGGGCGGAC
CGAGTCTTGGCCGCACATGATTTGATGCTCGTGCCCATCCCATCGCCACA
TAAAATGGCGGAAGTGGGAGCCGATGACTAAATGGTCCACACGGTGCCAT
GCGTAGGCTTCGTCGTGACCGAGAAGGACAAGCCAGGGCGACTGCGTGCA
GAGTACGTTCGGCCCATCGTGGAACGTAACAAGGCCGGTCTCCTTGAACA
GGGACTGAGCGACCCCAACAAGATCTTCCGCCTCTTGAAGACTCTCCAGC
CCGGGGAGGCAGTCAACCTCCCCGACGGGACTTTGCTCCGGGCGGAGGAG
GTAATGGAGGCGGCGAAACAGGGCCGTAAAATCGTCATCTGCGGAGACAC
CTCCGACGCCTCAGGGATCGCCGCGCTGGCACAGGATTGCGACGTGCTCG
TCCATGAAGCGACCAACGCTTTCTTGCTGCCTTTCGATAAGGGCACCTAC
ATGGATGTGGAACGATTTGCCCGGGCCCATGGTCATTCCACGCCACAGAT
GGCCGGTCATTTCGCGCACCGGGTCAGAGCCAAACGGTTGATCATGACGC
ACTTTAGCCCCCGTTACAAAGGTGACTTGAGCCCCGAGAGCCTCGCCATT
ATGAAACGCTTGGAAGACATGGCGCGCAAGACTTCGAAACTCCGGGCGGA
CCGAGTCTTGGCCGCACATGATTTGATGCTCGTGCCCATCCCATCGCCAC
ATAAAATGGCGGAAGTGGGAGCCGATGACTAAATGGTCCACACGGTGCCA
TGCGTAGGCTTCGTCGTGACCGAGAAGGACAAGCCAGGGCGACTGCGTGC
AG
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Synonyms
Publications