EWM24863.1, cds5814 (CDS) Nannochloropsis gaditana

Overview
NameEWM24863.1
Unique Namecds5814
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:950943..951012 -
Alignment locationCM002466.1:950158..950738 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24863.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100381g5.8978.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:950943..951012 -
CM002466.1supercontigCM002466.1:950158..950738 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR001279Beta-lactamas-like
Homology
BLAST of EWM24863.1 vs. NCBI_GenBank
Match: gi|585106473|gb|EWM24863.1| (hypothetical protein Naga_100381g5 [Nannochloropsis gaditana])

HSP 1 Score: 443.351 bits (1139), Expect = 1.798e-157
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD 216
            MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD
Sbjct:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD 216          
BLAST of EWM24863.1 vs. NCBI_GenBank
Match: gi|585106472|gb|EWM24862.1| (hypothetical protein Naga_100381g5 [Nannochloropsis gaditana])

HSP 1 Score: 444.506 bits (1142), Expect = 2.724e-157
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD 216
            MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD
Sbjct:   44 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD 259          
BLAST of EWM24863.1 vs. NCBI_GenBank
Match: gi|553179576|ref|XP_005852722.1| (ribonuclease Z [Nannochloropsis gaditana CCMP526] >gi|422295812|gb|EKU23111.1| ribonuclease Z [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 441.425 bits (1134), Expect = 8.355e-157
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 0
Query:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD 216
            MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIA LAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD
Sbjct:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAVLAQDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSPHKMAEVGADD 216          
BLAST of EWM24863.1 vs. NCBI_GenBank
Match: gi|1210529699|dbj|GAX11793.1| (ribonuclease Z [Fistulifera solaris])

HSP 1 Score: 221.09 bits (562), Expect = 7.439e-68
Identity = 110/205 (53.66%), Postives = 143/205 (69.76%), Query Frame = 0
Query:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGT-YMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIP 204
            M H +PCVG+VV E  +PGRL+ EYV PIV+RN A L + G   P K   ++K L PG A   PDGT++  E+ +EA +QGRK+VICGDT+D+  +  LA + DV++HEATNA+L   DK T + +V R A AHGHSTPQ+AG F+  V  KRLI+ HFS RYKGD+S +SL+IM R+E  A K S L   +V AA DLM++PIP
Sbjct:  146 MSHGIPCVGYVVEELSRPGRLKNEYVEPIVKRNIAALKKAGFRAPMKAMAVIKNLPPGGAFTFPDGTVVTHEDAVEAPRQGRKVVICGDTADSRALRGLALNADVIIHEATNAYLQGVDKDTSFREVTRDAIAHGHSTPQIAGAFSKAVNGKRLILNHFSARYKGDVSVDSLSIMMRIEMQAMKASGLNETQVAAAWDLMVLPIP 350          
BLAST of EWM24863.1 vs. NCBI_GenBank
Match: gi|1210520429|dbj|GAX20860.1| (ribonuclease Z [Fistulifera solaris])

HSP 1 Score: 219.935 bits (559), Expect = 1.433e-65
Identity = 109/205 (53.17%), Postives = 141/205 (68.78%), Query Frame = 0
Query:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGT-YMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIP 204
            M H +PCVG+VV E  +PGRL+ EYV PIV+RN A L + G   P K   ++K L PG A   PDGT++  E+ +EA +QGRK+VICGDT+D+  +  LA + DV++HEATNA+L   DK T + +V R A  HGHSTPQ+AG F   V  KRLI+ HFS RYKGD+S +SL+IM R+E  A K S L   +V AA DLM++PIP
Sbjct:  323 MSHGIPCVGYVVEELSRPGRLKNEYVEPIVKRNIAALKQAGFKAPMKAMAVIKNLPPGGAFTFPDGTVVTHEDAVEAPRQGRKVVICGDTADSRALRGLALNADVIIHEATNAYLQGVDKDTSFREVTRDAITHGHSTPQIAGAFCKAVNGKRLILNHFSARYKGDVSVDSLSIMMRIEMQAMKASGLNETQVAAAWDLMVLPIP 527          
BLAST of EWM24863.1 vs. NCBI_GenBank
Match: gi|397647606|gb|EJK77775.1| (hypothetical protein THAOC_00370, partial [Thalassiosira oceanica])

HSP 1 Score: 225.328 bits (573), Expect = 2.062e-65
Identity = 105/204 (51.47%), Postives = 147/204 (72.06%), Query Frame = 0
Query:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDK-GTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPI 203
            M H+VPCVG+VVTE+DKPGRL+ E V P+++RN+ GL++ G+ +P K+  ++K+L  G + + PDGT++  E+V+E  ++GRKI ICGDT++   +A+LAQD DVL+HEATN FL   DK G      R A+ HGHSTP MAG FA R+ AK+LI+ HFS RYKGD S +S+ IM R+E  A K ++L  D V A+ D M++P+
Sbjct:  619 MSHSVPCVGYVVTEQDKPGRLKPENVLPVIDRNRQGLIDAGIRNPMKVMAMVKSLPVGGSYSFPDGTIINQEDVVEPPRRGRKIAICGDTANCRALASLAQDADVLIHEATNTFLPGVDKDGDLRGASRDAKIHGHSTPHMAGEFARRINAKKLILNHFSARYKGDQSIDSMTIMTRIEKQAMKAAQLPEDCVAASWDFMVLPL 822          
BLAST of EWM24863.1 vs. NCBI_GenBank
Match: gi|224013026|ref|XP_002295165.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969127|gb|EED87469.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 221.861 bits (564), Expect = 4.293e-65
Identity = 109/205 (53.17%), Postives = 140/205 (68.29%), Query Frame = 0
Query:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDK-GTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIP 204
            M H VPCVG+V+ E D+PGRL+ E V P++ERN AGL+E G+  P K+  ++K L  G +   PDGT+++ E+V+E  ++GRK+VICGDT+D  G+  LAQ  DVLVHEATN FL   DK G    V R A+ HGHSTP MAG FA R+ AK+L++ HFS RYKGD S ES+ IM R+E  A K S L    V  A D M++PIP
Sbjct:  450 MSHGVPCVGYVIEEHDRPGRLQPENVLPVIERNHAGLIEAGVRHPMKVMAMVKNLPVGGSYTFPDGTVVKQEDVVEPPRKGRKVVICGDTADCRGLEGLAQGADVLVHEATNTFLPGVDKDGDLRGVTRDAKIHGHSTPFMAGEFAKRIGAKKLVLNHFSARYKGDQSIESMTIMTRMERQAMKASGLPETSVACAWDYMILPIP 654          
BLAST of EWM24863.1 vs. NCBI_GenBank
Match: gi|1001612028|gb|KXS15794.1| (Metallo-hydrolase/oxidoreductase [Gonapodya prolifera JEL478])

HSP 1 Score: 191.815 bits (486), Expect = 5.037e-56
Identity = 103/208 (49.52%), Postives = 134/208 (64.42%), Query Frame = 0
Query:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLP--FDKGTYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPIPSP 206
            M HTVPCVG+ + E D PGRL+ E +RP++E     +   G++ P    RLL  ++ G+ V LPDGT+L AE  +E  K+GR +V+ GDTSD+S IA LA+ C VLVHEATNA L     +  T   VE+  + HGHSTP++AGHFA  V A+RLI+THFS RYKGD +PES+ +M  +  +A K      D VL A DLM V I  P
Sbjct:  192 MCHTVPCVGYSLREHDGPGRLKVEELRPLIEAQADAIRASGVAQP---LRLLSEVKAGKKVTLPDGTVLEAERFVEEPKRGRHVVVLGDTSDSSQIAKLARGCTVLVHEATNACLEDDLKNGATPESVEQLTKEHGHSTPELAGHFAKDVDAQRLILTHFSNRYKGDEAPESMRVMDDIRALAVKA--FGKDDVLTARDLMTVAIQRP 394          
BLAST of EWM24863.1 vs. NCBI_GenBank
Match: gi|219128782|ref|XP_002184584.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404034|gb|EEC43983.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 168.318 bits (425), Expect = 4.765e-48
Identity = 83/163 (50.92%), Postives = 110/163 (67.48%), Query Frame = 0
Query:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQGLSDPNKIFRLLKTLQPGEAVNLPDGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKGTYM-DVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRY 162
            M H +PC+G+VV E  +PGRLR E V PIV+RN   L E G + P K   +LK L PG A   PDGT+++ E+ +E  ++GRK+VI GDT+D   +  LAQ+ D+++HEATN +L   DK T + +V R A  HGHSTPQ+AG FA  V AKRL++ HFS RY
Sbjct:  122 MSHGIPCLGYVVDELPRPGRLRNEVVEPIVKRNVQALREAGFTVPMKAMAVLKNLPPGNAFTFPDGTVVQQEDAVEPPREGRKVVIGGDTADCRALRNLAQNADLVIHEATNCYLQGVDKDTDVREVTRDAVMHGHSTPQIAGDFARSVNAKRLVLNHFSARY 284          
BLAST of EWM24863.1 vs. NCBI_GenBank
Match: gi|298710875|emb|CBJ26384.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 176.407 bits (446), Expect = 2.997e-47
Identity = 99/207 (47.83%), Postives = 128/207 (61.84%), Query Frame = 0
Query:    1 MVHTVPCVGFVVTEKDKPGRLRAEYVRPIVERNKAGLLEQ-GLSDPNKIFRLLKTLQPGEAVNLP--DGTLLRAEEVMEAAKQGRKIVICGDTSDASGIAALAQDCDVLVHEATNAFLLPFDKG-TYMDVERFARAHGHSTPQMAGHFAHRVRAKRLIMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLRADRVLAAHDLMLVPI 203
            M H VPCVG+ V E D+PGRL+ E + PI+E +K  +    G  D   +   +K+ + GE + LP  D TL  A+ V  + K GRK+VI GDT DA+ I  LA   DV+VHEATN  L P D+G TY DVE  A  HGHSTP MA  FA RV AK LI+ HFS RY+GD S  S+A M R+E  A +   L   +V+A+ DL+ +P+
Sbjct:  640 MKHGVPCVGYTVEEADRPGRLKVEELNPILEEHKQAICNTTGRKDVGWMLGWIKSTKRGETITLPGTDVTLDSADYVGASVK-GRKVVILGDTCDAASIVPLAMGADVVVHEATNTMLPPLDQGKTYADVEAEAIKHGHSTPMMAAAFAQRVGAKTLILNHFSARYRGDPSDASVAAMLRIERQAARAGGLERHQVVASWDLLEMPV 845          
The following BLAST results are available for this feature:
BLAST of EWM24863.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106473|gb|EWM24863.1|1.798e-157100.00hypothetical protein Naga_100381g5 [Nannochloropsi... [more]
gi|585106472|gb|EWM24862.1|2.724e-157100.00hypothetical protein Naga_100381g5 [Nannochloropsi... [more]
gi|553179576|ref|XP_005852722.1|8.355e-15799.54ribonuclease Z [Nannochloropsis gaditana CCMP526] ... [more]
gi|1210529699|dbj|GAX11793.1|7.439e-6853.66ribonuclease Z [Fistulifera solaris][more]
gi|1210520429|dbj|GAX20860.1|1.433e-6553.17ribonuclease Z [Fistulifera solaris][more]
gi|397647606|gb|EJK77775.1|2.062e-6551.47hypothetical protein THAOC_00370, partial [Thalass... [more]
gi|224013026|ref|XP_002295165.1|4.293e-6553.17predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1001612028|gb|KXS15794.1|5.037e-5649.52Metallo-hydrolase/oxidoreductase [Gonapodya prolif... [more]
gi|219128782|ref|XP_002184584.1|4.765e-4850.92predicted protein, partial [Phaeodactylum tricornu... [more]
gi|298710875|emb|CBJ26384.1|2.997e-4747.83conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5829rna5829Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications