rna5705, rna5705 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5705
Unique Name	rna5705
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1977
Alignment location	CM002466.1:632575..634909 +

Link to JBrowse

Properties


Property Name	Value
Product	60s ribosomal export protein
Orig transcript id	gnl\|cribi\|Naga_100122g7.3568.mrna
Orig protein id	gnl\|cribi\|Naga_100122g7.3568
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:632575..634909 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100122g7	gene5512	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5705	rna5705-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24981.1	cds5690	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:632575..634909+
coding sequence from alignment at CM002466.1:632575..634909+

mRNA sequence

>rna5705 ID=rna5705|Name=rna5705|organism=Nannochloropsis gaditana|type=mRNA|length=1977bp
TGTCACGCTTACATGTTCATATCCTCAGAACGGGAAATGTTAAGAAATAG
TTAAAAGTTATTCTGCAGTACCCACGGGTCGTATGGCCATGGGACGCGGA
AGGCCCATCGCAAAGTCGCTCGTTCTCGTCGCTGTCTCCACGAGATGACT
TCTCTGAGTACTGACTGCCAGGGCACCGATACGGGCTCGCATCATTTGAA
ATTGGAATCAAAGAAGTGACAGAATCGAAATCTGATGTGCAGCGTGGCGT
GTCAGTCCAATTTGCGAGTTGCAAGCGTGCAGAAATAATACGAAGAGGTT
GGACCAGCCAACCTCCTCTCCCTCCCTTGAGCATGCTGCTACACTCTGAT
GTGATGCGCAAGTTACTTGTTGCTAGAAAGGAAATGGTGCAGGATGTCCT
TACAGTATGTTCGAAATTTGAAGTGTGCTAATACAGACTCTCAACGTGGC
AATGCCGGCCGAACGGTCATTTGTGAATATCAACATCGATGGAGGGCCTC
CATGCCTGGCCTGATTTTGCACAACTTCCCAACATATCATTTTTTGGCTT
TTGCGGCATGAGTGCCATCCACAACGTACGAAGGTAGAAGTACGACTTGA
CCATGGAGCTTAACTCGTTGCCGGCTTCCGACAGCAACTGGTTTTCATCT
CATCGAGACACATACTTCCTAGCACTTTCAAAGAGATCGGTCGAAGCAAG
CAGCTCGCAGCTTGAGGAAAATTAATTATTGGGATCAAACCCTTGAACGC
CCATGGGCGCTCATTAGGTGTACTCATCTTGCACGTGTGTGCCTTGAGCC
ATCAGAATCCGTCAATCGTCGCATCACCCTCTGTTCCTCCCAGGGGGCTT
CGGGGCTCCTTCCTGATTCACAGTCCCGCCCTTCAGGCGATGAGCAACAG
CCATGAGACGCCTGCATCGCATCCACTACCCTCATTTCAAGCCACATATT
CCTTGGGACCCGATTCCCCGTTGTCTATGCCAGCGGTGGGACTGGGCACT
TTCCAGGTCAAAGAGCAGGCTGGCTATGAAGCAGTGAAAGCAGCCATTAA
GGTGGGGTACACTCACATTGACACGGCTTCTGTCTATCGGAACGAGGCCG
CGGTCGGGCGAGCCATCCGTGAGAGCAATGTCCCACGCCACGAGCTCTTC
CTAACCACCAAGCTGGCGCCCAAGGACCAAGGAGCGGGTAAGGCCTACGC
GTCCCTCTGCCGATCGCTGAGCGAGCTGGGCCTCGACTACGTTGACTTGT
ACCTGATCCACTGGCCGGCCGCCTCGGGCCTCAAGCACGACGACCCGCTC
AATCGAATCCGACGCCACGAGAGCTATGTGGAGCTGCAGCAGGGTGTACG
AGAGGGCAAGATAAAGAACTTGGGTGTGTCCAATTTCGAAATACGCCATC
TCACAGCCCTTCTTGCAGACCCCGCAGTAACATATCCGCCCAGCGTCAAC
CAAGTCGAGTGCCACCCTCTCTATCCGCAGATTCAGCTTCGGGAGTACTG
CCGGAAGCACGGAATCCTCATCCAAGCGTATAGTTCGTTGGGGCAAGGCA
AACAAGATCTGCTCGCCCACCCGGTCGTGACCAGCACCGCCACCAAACGA
GGCATGACACCTGCTCAGGTTTTGCTGCGATGGGCTCTTCAGCAGGGCAT
ACCTGTATTGCCAAAGACCACAAACACCATGCGAATGACCGAAAATTTGG
GGGCTTTGAATAAGGAATTGCAGAATGAAGATATGCATGCCCTGAATGGT
CTAGATGAATCATTGTATCGTAAATTCGCATGGGACCCATGTCAAGTCTT
CTGAGTTTTTTAGGGAATGGCACGACTATGCGACGTCTGCCCCCCAAAAA
CAGCAACTCCACCACCATCACCAATCAAAAATCGACCATCGAGAACAAGT
GCGAGTGATTTGAATGCGCTTTCGGAATTGTCTTGAGTATCAAAAAAGTT
GAACGAGACAACCTTTGTTTCTTTAGT

protein sequence of rna5705

>rna5705-protein ID=rna5705-protein|Name=rna5705|organism=Nannochloropsis gaditana|type=polypeptide|length=619bp
MADVMAPIAPNQTPVAAICCMCAINIQPNPTNMCLQCLRTQVNIASGLST
RVTMHQCRGCLKYMGGSGGTGWSHYEAESRELMAVCLRKVAGLNRLRLVD
AGWIWTEPHSKRLKLKLTVQQEVMNGAVLQEAVVVEFVVRNQQCPDCQAS
YTIGAWKAIVQVRQRVDHKRTFLHLEQLILKHNAHAQALQIQGFADGMDF
YFAERNQAARFTEFLETACPVRVKQSKKLVSQDDHSNVFNYKYTTIIEIV
PVCKDDLVILPTKLAQNLGDIARLCLVLRVLNHLHLIDPLTGQTAEVSVE
KYHKAGFEFRALLSASRLVEFMVLGSEPALAPTKTSAPARRSKRHRLAEV
EVALMSDLGANDTRYRVFTHLGHILRAGDTVLGYLLATASLNSADADELE
TKTRAGLPDAVLVRKVYSNEGRIRPAWRLKKFEADEMEVVEAGNAEQEDR
DLRDYRQQLEGDREMRRRVNMYKAGRPLPGGAEDTDHENAALGQKAGKTK
GKVEKMTVVSAMGEGDGSTRLDERDRSTNEGLGEDVGEDDEEALRLDELL
DDLELDDPDAPPDDHEAQVLVGDVSSTGIAGVSKDFAFTFQPKTRNDDRD
GNHAKTKDEQDAEEIYKEL

mRNA from alignment at CM002466.1:632575..634909+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5705 ID=rna5705|Name=rna5705|organism=Nannochloropsis gaditana|type=mRNA|length=2335bp|location=Sequence derived from alignment at CM002466.1:632575..634909+ (Nannochloropsis gaditana)
CCACGCTGCACATCAGATTTCGATTCTGTCACTTCTTTGATTCCAATTTC
AAATGATGCGAGCCCGTATCGGTGCCCTGGCAGTCAGTACTCAGAGAAGT
CATCTCGTGGAGACAGCGACGAGAACGAGCGACTTTGCGATGGGCCTTCC
GCGTCCCATGGCCATACGACCCGTGGGTACTGCAGAATAACTTTTAACTA
TTTCTTAACATTTCCCGTTCTGAGGATATGAACATGTAAGCGTGACATGC
ATTGAAAGTTCAGTACGGAAAGCTGACGGTCCAATGCACATACAGGCCTA
AGCTCAGCTATCAATAAAGAAGCAGGATACTGTCCGAGTGCCACCAAGAT
CTTACAAAATTCTGAATTTGCACCACTTTTACTCATCGACAGTGTTCATC
TCATGGCGGACGTAATGGCGCCTATAGCACCAAATCAAACGCCGGTGGCC
GCCATTTGCTGCATGTGCGCGATAAACATCCAGCCGAACCCTACAAACAT
GTGCCTGCAATGTCTGCGGACGCAGGTGAACATTGCATCCGGCCTATCGA
CACGCGTGACCATGCACCAATGTCGTGGCTGCCTGAAGTACATGGGAGGC
TCCGGAGGCACTGGCTGGTCACATTACGAGGCCGAGTCCCGCGAGCTGAT
GGCCGTATGCTTGCGCAAGGTTGCTGGTCTCAACCGTCTTCGCCTGGTCG
ACGCTGGATGGATTTGGACGGAGCCCCACTCGAAACGTCTAAAATTAAAA
CTGACCGTCCAACAAGAAGTCATGAATGGAGCGGTGCTCCAAGAGGCAGT
GGTTGTCGAGTTCGTGGTTCGCAACCAGCAGTGCCCTGACTGCCAAGCCT
CGTACACGATCGGGGCCTGGAAAGCCATCGTGCAAGTCCGACAGCGTGTG
GACCACAAACGGACATTTTTGCATTTGGAACAGCTCATCCTCAAGCACAA
CGCGCATGCACAAGCCTTGCAGATCCAGGGCTTTGCGGACGGGATGGACT
TTTACTTTGCGGAACGCAACCAAGCGGCGCGTTTCACCGAGTTCCTGGAG
ACCGCCTGCCCTGTCCGGGTAAAGCAATCCAAAAAACTGGTTTCACAGGA
CGATCATTCCAACGTCTTCAACTACAAGTACACCACAATCATCGAGATCG
TCCCGGTCTGCAAGGACGATTTGGTGATCCTGCCCACTAAACTCGCTCAG
AACCTGGGGGACATCGCTCGCCTGTGCTTGGTCTTGCGTGTGCTGAacca
cctccacctcatcGACCCCCTCACCGGCCAGACGGCGGAAGTCTCTGTGG
AGAAATATCACAAGGCTGGGTTTGAATTTCGCGCCCTGCTTTCCGCGTCC
CGCCTGGTCGAATTCATGGTCCTCGGCTCTGAGCCTGCCTTGGCCCCCAC
TAAGACGTCGGCGCCCGCGCGGCGCTCGAAGCGGCATCGACTGGCGGAAG
TGGAGGTGGCCCTGATGTCGGATTTGGGCGCGAATGATACTCGGTACCGG
GTGTTCACCCACTTGGGGCACATTTTGCGGGCGGGTGACACTGTGCTTGG
ATACCTGCTGGCGACCGCCTCTTTGAATAGTGCCGACGCGGACGAGCTGG
AGACCAAGACACGGGCGGGCTTGCCGGATGCGGTTTTGGTGCGGAAGGTG
TATTCTAACGAAGGGCGAATCAGGCCGGCCTGGAGGCTGAAGAAATTCGA
GGCGGAcgagatggaggtggtggaggctggAAACGCGGAGCAGGAGGATC
GAGATTTGCGTGACTATCGTCAGCAAttggagggagacagggagatGCGA
CGGAGAGTGAACATGTACAAGGCGGGACGACCATTGCCGGGGGGTGCCGA
GGACACGGACCACGAGAACGCGGCGCTTGGAcagaaggcggggaagactA
AGGGCAAGGTAGAGAAAATGACTGTAGTTTCTGCCATgggcgaaggagat
ggaagcaCGCGACTGGATGAGAGGGATCGCTCCACGAAtgagggcctggg
agaggacgtcggggaggacgacgaggaggccttgCGCTTGGATGAACTGC
TGGATGATCTGGAATTGGACGATCCCGACGCACCGCCCGACGACCATGAG
GCTCAAGTTCTCGTGGGGGATGTGTCAAGCACTGGTATTGCCGGGGTGTC
AAAGGACTTCGCGTTCACATTCCAACCGAAGACAAGGAACGATGATAGGG
ACGGGAATCACGCAAAAACCAAAGATGAGCAAGACGCTGAGGAGATTTAT
AAAGAGCTGTAGTGTTGTTTGAGTTGTGAATTGGTGTAATAAAACAAGAT
ATCATAAGAgacgaaagaaagaaataCTCGAACAC

Coding sequence (CDS) from alignment at CM002466.1:632575..634909+

>rna5705 ID=rna5705|Name=rna5705|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at CM002466.1:632575..634909+ (Nannochloropsis gaditana)
ATGGCGGACGTAATGGCGCCTATAGCACCAAATCAAACGCCGGTGGCCGC
CATTTGCTGCATGTGCGCGATAAACATCCAGCCGAACCCTACAAACATGT
GCCTGCAATGTCTGCGGACGCAGGTGAACATTGCATCCGGCCTATCGACA
CGCGTGACCATGCACCAATGTCGTGGCTGCCTGAAGTACATGGGAGGCTC
CGGAGGCACTGGCTGGTCACATTACGAGGCCGAGTCCCGCGAGCTGATGG
CCGTATGCTTGCGCAAGGTTGCTGGTCTCAACCGTCTTCGCCTGGTCGAC
GCTGGATGGATTTGGACGGAGCCCCACTCGAAACGTCTAAAATTAAAACT
GACCGTCCAACAAGAAGTCATGAATGGAGCGGTGCTCCAAGAGGCAGTGG
TTGTCGAGTTCGTGGTTCGCAACCAGCAGTGCCCTGACTGCCAAGCCTCG
TACACGATCGGGGCCTGGAAAGCCATCGTGCAAGTCCGACAGCGTGTGGA
CCACAAACGGACATTTTTGCATTTGGAACAGCTCATCCTCAAGCACAACG
CGCATGCACAAGCCTTGCAGATCCAGGGCTTTGCGGACGGGATGGACTTT
TACTTTGCGGAACGCAACCAAGCGGCGCGTTTCACCGAGTTCCTGGAGAC
CGCCTGCCCTGTCCGGGTAAAGCAATCCAAAAAACTGGTTTCACAGGACG
ATCATTCCAACGTCTTCAACTACAAGTACACCACAATCATCGAGATCGTC
CCGGTCTGCAAGGACGATTTGGTGATCCTGCCCACTAAACTCGCTCAGAA
CCTGGGGGACATCGCTCGCCTGTGCTTGGTCTTGCGTGTGCTGAaccacc
tccacctcatcGACCCCCTCACCGGCCAGACGGCGGAAGTCTCTGTGGAG
AAATATCACAAGGCTGGGTTTGAATTTCGCGCCCTGCTTTCCGCGTCCCG
CCTGGTCGAATTCATGGTCCTCGGCTCTGAGCCTGCCTTGGCCCCCACTA
AGACGTCGGCGCCCGCGCGGCGCTCGAAGCGGCATCGACTGGCGGAAGTG
GAGGTGGCCCTGATGTCGGATTTGGGCGCGAATGATACTCGGTACCGGGT
GTTCACCCACTTGGGGCACATTTTGCGGGCGGGTGACACTGTGCTTGGAT
ACCTGCTGGCGACCGCCTCTTTGAATAGTGCCGACGCGGACGAGCTGGAG
ACCAAGACACGGGCGGGCTTGCCGGATGCGGTTTTGGTGCGGAAGGTGTA
TTCTAACGAAGGGCGAATCAGGCCGGCCTGGAGGCTGAAGAAATTCGAGG
CGGAcgagatggaggtggtggaggctggAAACGCGGAGCAGGAGGATCGA
GATTTGCGTGACTATCGTCAGCAAttggagggagacagggagatGCGACG
GAGAGTGAACATGTACAAGGCGGGACGACCATTGCCGGGGGGTGCCGAGG
ACACGGACCACGAGAACGCGGCGCTTGGAcagaaggcggggaagactAAG
GGCAAGGTAGAGAAAATGACTGTAGTTTCTGCCATgggcgaaggagatgg
aagcaCGCGACTGGATGAGAGGGATCGCTCCACGAAtgagggcctgggag
aggacgtcggggaggacgacgaggaggccttgCGCTTGGATGAACTGCTG
GATGATCTGGAATTGGACGATCCCGACGCACCGCCCGACGACCATGAGGC
TCAAGTTCTCGTGGGGGATGTGTCAAGCACTGGTATTGCCGGGGTGTCAA
AGGACTTCGCGTTCACATTCCAACCGAAGACAAGGAACGATGATAGGGAC
GGGAATCACGCAAAAACCAAAGATGAGCAAGACGCTGAGGAGATTTATAA
AGAGCTGTAG

Synonyms

Publications