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Properties
| Property Name | Value |
|---|
| Product | dead-box atp-dependent rna helicase 50-like protein |
| Orig transcript id | gnl|cribi|Naga_100049g5.2101.mrna |
| Orig protein id | gnl|cribi|Naga_100049g5.2101 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:519401..520762 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5662 ID=rna5662|Name=rna5662|organism=Nannochloropsis gaditana|type=mRNA|length=795bp
ATGGCCATCAGAAGAGGCATCGCCTGTTCTATACTGCTTTTCCTCGTGGC
CGTCACGCATGCTTTCGTACGACCAGCCGCCCCTTCGTCCCTGCAGGTGA
GGAAGCAGCAACACCCTGGGCCCCCCCGGGGGCACCCTGAGCATTCGGGT
TTAAAGCCTTTACAGGCCAAGGGGTCGGGACCTGAATTTGGACGAAAACA
AGCGAAACGAGACTTAATGGAGAGGCAACGAGCGATGGCTGAGTTCAATG
CCGAAATTGAGACAACGCCCGTGTTCCAAGTGTTCGCGGCCACGCAGAAG
ATGAAGGGGTTGTGGATGCCTGTGGCGGCTTTCAAGGCCGACAACGTAGC
CAAAGGCGTCGTGGACGCGTCGTTGCAAGAGGGCATTGCTGCCAACATGT
TCAAGGGCGTATACAAGGCGCAGGTAGAGACGGCTGTGTCCAAGGCCATC
TTTGACAACGAGAGGCGGCTTCGGGAACAGGGTCAAGCCATGCACGCCAC
CCTAAAGAACGCGCCCAGGGATCAGATCATTTGGGGGTTTAAGATATTGT
ACAAACCTCTTCAGGACAAGTTCGGTAAGACTCAGCAGCCGACAGTGGTC
ACCAAGGACATGTCCAAGAGCCTCTTTGATAAGTTCAAGGACAGCGTATC
GAATAAGGTGCAAGAGACCTTCAGTCTTAAGTTGGAGGAGCCCGCGCCCA
CTACGCCGACACCCCCTCCTGCGGGGGGCGGAAAGAAAAAGAAAGGGGGA
AAGAAAGACAAAAGCGGTGCTGCCGCTTCAGCGGCAAGCGAGTGA back to topprotein sequence of rna5662 >rna5662-protein ID=rna5662-protein|Name=rna5662|organism=Nannochloropsis gaditana|type=polypeptide|length=453bp
MGAEEGEKEVEPTEYYEERFREGGLRTEADEGGLDEERAARLADTFFFSR
KTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSG
KTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVA
SVARAMTRHMPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEE
NKVLLGEMQALVLDEVDVMFLDDSFDLAVIGAAAPAHTQFLFVTATLPVP
VADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVR
KRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYH
SAVNPQDRQKNLDIFSSRVERPLIMVCTDRTSRGVDFDTADVQHVVLFDF
PRDPSEYVRRVGRTGRAGRVGRVTALVLGRQVGLARSIMEGNSKGARVHP
VPN back to topmRNA from alignment at CM002466.1:519401..520762+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5662 ID=rna5662|Name=rna5662|organism=Nannochloropsis gaditana|type=mRNA|length=1362bp|location=Sequence derived from alignment at CM002466.1:519401..520762+ (Nannochloropsis gaditana)
atgggggccgaggagggggaaaaagaggtggaACCGACGGAGTACTACGA
AGAACGCtttcgggagggggggctgcGGACCGAGGCTGATGAGGGTGGCT
TGGatgaggagagggccgcgCGCCTGGCGGacaccttcttcttcagccgG
AAGACCTTCGAGGAGATCGGTGCCTCCCCCGAGGCCCGGGCCGCCCTGGG
GTCCATGGGCatcgcccgcccttccaagGTCCAGACCATTGCCTACCCGC
ACATTCTACAGGGATCCTCCTGCATTATCGCCGAGCAGACGGGCTCGGGG
AAGACCCtggcctacctcctccccctcttgcaGCGACtccggggcctgga
ggggggaggggagggcaagggcggcttGGGTCGCGCCCCTCCCAAGTCGC
CCCGCGTGGTCGTCCTTGCCCCCACCGCGGAGCTGGCGGCACAGGTTGCC
TCGGTGGCCCGGGCAATGACCCGCCACATGCCGTTGCGGGTGTGCTGTgt
gacgggggggaagaaccCGCGGACGCAGGGGGAGATGCTCAAGCAGGGCG
TGGACGTCCTGATCGGGACGCCAGGACGGGTCCAGTACCTGCTGGAAGAG
AATAAGGTGCTTTTGGGGGAGATGCAGGCCTTGGTCTTggacgaggtgga
cgtgATGTTCCTGGACGACTCCTTCGACCTGGCCGTGATTggggccgccg
cccccgcgcACACCCAGTTTCTCTTCGTCACCGCCACCCTGCCCGTGCCC
GTGGCGGACCAGATCGCTCGAGAATTCCCGGGCGTGAAAAAGTTATGGGG
TCCAGGCCTGCACAAGATCGCGCCtcaagtggaggaggttctGGTGGATT
GCTCCGGcccctgggaggaggagcggaacGAGGAAACTGGCTTTGTCCGA
AAACGGGACATGCTGGTCCAGAACCTGCTCAAGCACCCGGCGCCTCGCTC
TTTGGTCTTTTGCAATTCCATTCCCACATGCCGCAAGGTGGAAAATGCGT
TGCGCCGGGCGGATCGACAGGAAAAGCGATGGCAGGTTCTCGCTTACCAC
TCTGCTGTCAATCCTCAGGACCGGCAAAAAAACTTGGACATCTTTTCGTC
ACGTGTCGAGAGGCCTTTGATAATGGTGTGCACTGATCGAACATCCCGCG
GTGTAGATTTCGATACGGCTGACGTACAGCACGTCGTGCTCTTCGACTTC
CCTCGAGACCCGTCAGAATACGTACGGCGGGTAGGGAGGACCGGAAGAGC
gggcagggtgggaagagTTACGGCATTGGTATTGGGGAGGCAAGTGGGTT
TGGCCAGATCGATCATGGAAGGAAACAGTAAGGGGGCCCGGGTGCATCCT
GTTCCGAATTAG back to topCoding sequence (CDS) from alignment at CM002466.1:519401..520762+ >rna5662 ID=rna5662|Name=rna5662|organism=Nannochloropsis gaditana|type=CDS|length=1362bp|location=Sequence derived from alignment at CM002466.1:519401..520762+ (Nannochloropsis gaditana)
atgggggccgaggagggggaaaaagaggtggaACCGACGGAGTACTACGA
AGAACGCtttcgggagggggggctgcGGACCGAGGCTGATGAGGGTGGCT
TGGatgaggagagggccgcgCGCCTGGCGGacaccttcttcttcagccgG
AAGACCTTCGAGGAGATCGGTGCCTCCCCCGAGGCCCGGGCCGCCCTGGG
GTCCATGGGCatcgcccgcccttccaagGTCCAGACCATTGCCTACCCGC
ACATTCTACAGGGATCCTCCTGCATTATCGCCGAGCAGACGGGCTCGGGG
AAGACCCtggcctacctcctccccctcttgcaGCGACtccggggcctgga
ggggggaggggagggcaagggcggcttGGGTCGCGCCCCTCCCAAGTCGC
CCCGCGTGGTCGTCCTTGCCCCCACCGCGGAGCTGGCGGCACAGGTTGCC
TCGGTGGCCCGGGCAATGACCCGCCACATGCCGTTGCGGGTGTGCTGTgt
gacgggggggaagaaccCGCGGACGCAGGGGGAGATGCTCAAGCAGGGCG
TGGACGTCCTGATCGGGACGCCAGGACGGGTCCAGTACCTGCTGGAAGAG
AATAAGGTGCTTTTGGGGGAGATGCAGGCCTTGGTCTTggacgaggtgga
cgtgATGTTCCTGGACGACTCCTTCGACCTGGCCGTGATTggggccgccg
cccccgcgcACACCCAGTTTCTCTTCGTCACCGCCACCCTGCCCGTGCCC
GTGGCGGACCAGATCGCTCGAGAATTCCCGGGCGTGAAAAAGTTATGGGG
TCCAGGCCTGCACAAGATCGCGCCtcaagtggaggaggttctGGTGGATT
GCTCCGGcccctgggaggaggagcggaacGAGGAAACTGGCTTTGTCCGA
AAACGGGACATGCTGGTCCAGAACCTGCTCAAGCACCCGGCGCCTCGCTC
TTTGGTCTTTTGCAATTCCATTCCCACATGCCGCAAGGTGGAAAATGCGT
TGCGCCGGGCGGATCGACAGGAAAAGCGATGGCAGGTTCTCGCTTACCAC
TCTGCTGTCAATCCTCAGGACCGGCAAAAAAACTTGGACATCTTTTCGTC
ACGTGTCGAGAGGCCTTTGATAATGGTGTGCACTGATCGAACATCCCGCG
GTGTAGATTTCGATACGGCTGACGTACAGCACGTCGTGCTCTTCGACTTC
CCTCGAGACCCGTCAGAATACGTACGGCGGGTAGGGAGGACCGGAAGAGC
gggcagggtgggaagagTTACGGCATTGGTATTGGGGAGGCAAGTGGGTT
TGGCCAGATCGATCATGGAAGGAAACAGTAAGGGGGCCCGGGTGCATCCT
GTTCCGAATTAG back to top
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