EWM25042.1, cds5647 (CDS) Nannochloropsis gaditana

Overview
NameEWM25042.1
Unique Namecds5647
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:519401..520762 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25042.1
Productdead-box atp-dependent rna helicase 50-like protein
Orig transcript idgnl|cribi|Naga_100049g5.2101.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:519401..520762 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0042221response to chemical
GO:0009719response to endogenous stimulus
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
Homology
BLAST of EWM25042.1 vs. NCBI_GenBank
Match: gi|585106678|gb|EWM25042.1| (dead-box atp-dependent rna helicase 50-like protein [Nannochloropsis gaditana])

HSP 1 Score: 922.924 bits (2384), Expect = 0.000e+0
Identity = 453/453 (100.00%), Postives = 453/453 (100.00%), Query Frame = 0
Query:    1 MGAEEGEKEVEPTEYYEERFREGGLRTEADEGGLDEERAARLADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRHMPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAVIGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSSRVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGRAGRVGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN 453
            MGAEEGEKEVEPTEYYEERFREGGLRTEADEGGLDEERAARLADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRHMPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAVIGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSSRVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGRAGRVGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN
Sbjct:    1 MGAEEGEKEVEPTEYYEERFREGGLRTEADEGGLDEERAARLADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRHMPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAVIGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSSRVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGRAGRVGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN 453          
BLAST of EWM25042.1 vs. NCBI_GenBank
Match: gi|873234921|emb|CEM01514.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 466.848 bits (1200), Expect = 2.229e-159
Identity = 235/410 (57.32%), Postives = 295/410 (71.95%), Query Frame = 0
Query:   46 FFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRHMPLRVCCVTGGKNPRTQGEML-KQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAVIGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFS-SRVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGRAGRVGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN 453
             FFSRK F +IGAS E   A+   G  RPSK+Q ++Y  +L G +C++A+QTGSGKTLAYL PLLQRLR      E + G  RA P SPRVVVLAPT ELA+QV+ V + +T   P+R  CVTGG N R Q  M+ + GVD+L+ TPGR++ +L+  K+ L ++ ALVLDEVDV+FLDD+F L  IG A    TQF+FVTAT+P  V  QI +EFP ++++ GPGLH+IAP VEEVLVDCSGP +E +NE T F RKR  L   L K   PR+L+FCNSI  CR+VENALRR DR  KR+QVL YHS ++ + R++  + F+      P+++V TD+ SRGVDFD  +V HV+LFDFPRDPSEYVRRVGRT RAGR GRVT+LVLGRQV LAR +ME N +G R+H VP 
Sbjct:   39 LFFSRKQFADIGASDEMIEAMSIAGAKRPSKIQALSYRTVLSGKNCVVADQTGSGKTLAYLAPLLQRLRD-----EERAGKPRALPGSPRVVVLAPTTELASQVSRVLKKLTAVAPVRTACVTGGYNARDQMRMVERSGVDILVATPGRLRSMLQMGKLNLHQLSALVLDEVDVLFLDDTFLLQPIGEATAPSTQFVFVTATIPTSVFAQIKQEFPDLRRIMGPGLHRIAPGVEEVLVDCSGPKDEAKNEFTAFERKRKALAGQLDKVVVPRTLIFCNSIENCRRVENALRRLDRGRKRFQVLPYHSGIDNERRREIFNAFTRENFLIPMVLVSTDQASRGVDFDQVEVGHVILFDFPRDPSEYVRRVGRTARAGRAGRVTSLVLGRQVSLARELMEVNRRGERIHDVPK 443          
BLAST of EWM25042.1 vs. NCBI_GenBank
Match: gi|298710365|emb|CBJ31982.1| (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 444.891 bits (1143), Expect = 2.478e-148
Identity = 234/424 (55.19%), Postives = 299/424 (70.52%), Query Frame = 0
Query:   28 EADEGGLDEERAARLADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRHMPLRVCCVTGG--KNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAVIGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIF-SSRVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGRAGRVGRVTALVLGRQVGLARSIMEGNSKGARV 448
            E D+G L   R   +    F+S K+  +IGAS  A +AL S+G+ RPSK+Q I+Y  IL G  C++A+QTGSGKTLAYL PL+QRLR LE   E  G   RA P  PRV++LAPTAELA QV  VA+ ++  +P R CC TGG  +  +TQ ++L++GVDVL+ TPGRV  LLE   + L + +A++LDEVDV+F+D++F LA IG  AP  TQF+FVTATLP  V+D +  EFPG K L GPGLH++AP VEEVL+DCSGP  E RNEETG  RKRD L+  L +  A R+LVFCN+I  CR+VEN L RA R   +++ L YHSA++P+    N+  F  S    P++MVCTDR+SRG+DFD A+V+HV+L+DFPRDP EY+RRVGRT RAGR G VT L  GRQV L R IM GN +G R+
Sbjct:  191 EVDDGSLGS-RMGPVDREHFYSIKSLPDIGASDLAVSALKSLGVVRPSKIQAISYSAILTGDHCVVADQTGSGKTLAYLAPLVQRLR-LEELAEVHG---RARPGRPRVLILAPTAELAQQVYGVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPGEPRNEETGLARKRDALLSQLERRMALRTLVFCNTIQGCRQVENMLSRASRG-GQFETLVYHSAIDPKQAASNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGKRL 608          
BLAST of EWM25042.1 vs. NCBI_GenBank
Match: gi|848901534|ref|XP_012850870.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 50 [Erythranthe guttata] >gi|848901537|ref|XP_012850871.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50 [Erythranthe guttata] >gi|604312451|gb|EYU26131.1| hypothetical protein MIMGU_mgv1a003563mg [Erythranthe guttata])

HSP 1 Score: 399.823 bits (1026), Expect = 3.622e-131
Identity = 206/417 (49.40%), Postives = 283/417 (67.87%), Query Frame = 0
Query:   43 ADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRH-MPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAV--IGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSS--RVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGR-AGRVGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN 453
            A + FFSRK+F+E+G + +   +L S+   RPS +Q +A+  +L   SCIIA+Q+GSGKTLAYLLP++QRLR      E   GL R     PRVV+L PTAELA QV ++ R+++R  +P R    TGG   +TQ E LKQ +DVLI TPGR  YL++E  + L ++++ +LDEVD+++ D+ F++A+  +   AP   Q+LFVTATLPV + +++   FP  K L GPG+H+ +P++EE+LVDCSG    ER+ +T F+ K++ L++ +   P  +++VFCN I TCRKVENALRR DRQE R +VL +H+A+  Q R  N++ F S       L +VCTDR SRG+DF  A V HVVLFDFPRDPSEYVRRVGRT R AG VG+     +G+QV LA  I+E N KG  +H VP+
Sbjct:  163 ATSDFFSRKSFKELGCNDDVIESLRSLQYTRPSHIQAMAFTPVLDEKSCIIADQSGSGKTLAYLLPIVQRLRQ-----EETEGLSRPASGHPRVVILVPTAELATQVLNICRSLSRAGVPFRSMVATGGFKQKTQLESLKQEIDVLIATPGRFMYLVKEGFLHLTDLKSAILDEVDILYNDEDFEIALQSLLNTAPVTAQYLFVTATLPVDIYNELVEVFPDCKVLMGPGMHRTSPRLEEILVDCSGDENAERSPDTAFLNKKNALLRLVEGSPVTKTIVFCNKIETCRKVENALRRFDRQETRTKVLPFHAALEQQSRLANMEEFRSFPSTNISLFLVCTDRASRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGVGKAFIFAVGKQVSLASRIIERNLKGHPLHDVPS 572          
BLAST of EWM25042.1 vs. NCBI_GenBank
Match: gi|641827698|gb|KDO46874.1| (hypothetical protein CISIN_1g005837mg [Citrus sinensis] >gi|641827699|gb|KDO46875.1| hypothetical protein CISIN_1g005837mg [Citrus sinensis])

HSP 1 Score: 402.519 bits (1033), Expect = 6.604e-131
Identity = 208/424 (49.06%), Postives = 293/424 (69.10%), Query Frame = 0
Query:   36 EERAARLADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRH-MPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAV--IGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSS--RVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGR-AGRVGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN 453
            ++R    AD  FFSRK+F+E+G S     +L      RPS++Q +A+P +++G SCI+A+Q+GSGKTLAYLLP++QRLR      E   GL ++   SPRVV+LAPTAELA+QV S  R++++  +P R   VTGG   +TQ E L++GVDVLI TPGR  +L++E  + L  ++  +LDEVD++F D+ F++A+  + +++P   Q+LFVTATLPV + +++   FP  K + GPG+H+I+P +EE LVDCSG  E ++  ET F+ K+  L+Q + K P  +++VFCN I TCRKVEN L+R DR+E R +VL +H+A++ + R  N+  F++    E  L +VCTDR SRG+DF  A V HVVLFDFPRDPSEYVRRVGRT R AG  G+    V+G+QV LA+ IME N KG  +H VP+
Sbjct:  253 KQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ-----EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669          
BLAST of EWM25042.1 vs. NCBI_GenBank
Match: gi|1173819823|ref|XP_020552097.1| (DEAD-box ATP-dependent RNA helicase 50 [Sesamum indicum])

HSP 1 Score: 398.667 bits (1023), Expect = 1.166e-130
Identity = 201/417 (48.20%), Postives = 288/417 (69.06%), Query Frame = 0
Query:   43 ADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTR-HMPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAV--IGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSSRVER--PLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGR-AGRVGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN 453
            A++ FFSRK+F+E+G S     +L S+   RPS +Q +A+  +L G SC++A+Q+GSGKTLAYL+PL+QRLR      E   GL ++  +SPRVV+L PTAELA+QV S+ R++++  +P R    TGG   RTQ E L+QG+DVLI TPGR  +LL+E  + L  +++ +LDEVD+++ D+ F+LA+  +  +AP   Q+LFVTATLPV + +++   FP  + + GPG+H+ +P++EE+L+DCSG  E ER  +T F+ K++ L+  + + P  +++VFCN I TCRKVENAL+R DR E R +VL +H+A+  + R  N++ F +       + +VCTDR SRG+DF  A V HVVLFDFPRDPSEYVRRVGRT R AG  G+     +G+QV LAR I+E N KG  +H VP+
Sbjct:  163 ANSDFFSRKSFKELGCSDYIIESLRSLQYVRPSHIQAMAFAPVLGGKSCVMADQSGSGKTLAYLVPLVQRLRQ-----EELEGLSKSASQSPRVVILVPTAELASQVLSICRSLSKVGVPFRSMVATGGFRQRTQLENLRQGIDVLIATPGRFMFLLKEGFLQLTNLKSAILDEVDILYNDEDFELALQSLVNSAPVTAQYLFVTATLPVDIYNKVVEVFPDSEVIMGPGMHRTSPRLEEILIDCSGDEETERTPDTAFLNKKNALMHLVEESPVKKTIVFCNKIETCRKVENALKRFDRNEIRIKVLPFHAALEQESRLANIEAFRNFPPNNISMFLVCTDRASRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGKGKAFVFAVGKQVSLARRIIERNQKGHPLHDVPS 572          
BLAST of EWM25042.1 vs. NCBI_GenBank
Match: gi|567898902|ref|XP_006441939.1| (hypothetical protein CICLE_v10019165mg [Citrus clementina] >gi|557544201|gb|ESR55179.1| hypothetical protein CICLE_v10019165mg [Citrus clementina])

HSP 1 Score: 400.979 bits (1029), Expect = 2.384e-130
Identity = 207/424 (48.82%), Postives = 292/424 (68.87%), Query Frame = 0
Query:   36 EERAARLADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRH-MPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAV--IGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSS--RVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGR-AGRVGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN 453
            ++R    AD  FFSRK+F+E+G S     +L       PS++Q +A+P +++G SCI+A+Q+GSGKTLAYLLP++QRLR      E   GL ++   SPRVV+LAPTAELA+QV S  R++++  +P R   VTGG   +TQ E L++GVDVLI TPGR  +L++E  + L  ++  +LDEVD++F D+ F++A+  + +++P   Q+LFVTATLPV + +++   FP  K + GPG+H+I+P +EE LVDCSG  E ++  ET F+ K+  L+Q + K P  +++VFCN I TCRKVEN L+R DR+E R +VL +H+A++ + R  N+  F++    E  L +VCTDR SRG+DF  A V HVVLFDFPRDPSEYVRRVGRT R AG  G+    V+G+QV LA+ IME N KG  +H VP+
Sbjct:  253 KQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLCPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ-----EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKFGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEACLFLVCTDRASRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669          
BLAST of EWM25042.1 vs. NCBI_GenBank
Match: gi|568849591|ref|XP_006478533.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 50 [Citrus sinensis])

HSP 1 Score: 400.979 bits (1029), Expect = 2.587e-130
Identity = 207/424 (48.82%), Postives = 293/424 (69.10%), Query Frame = 0
Query:   36 EERAARLADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRH-MPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAV--IGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSS--RVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGR-AGRVGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN 453
            ++R    A+  FFSRK+F+E+G S     +L      RPS++Q +A+P +++G SCI+A+Q+GSGKTLAYLLP++QRLR      E   GL ++   SPRVV+LAPTAELA+QV S  R++++  +P R   VTGG   +TQ E L++GVDVLI TPGR  +L++E  + L  ++  +LDEVD++F D+ F++A+  + +++P   Q+LFVTATLPV + +++   FP  K + GPG+H+I+P +EE LVDCSG  E ++  ET F+ K+  L+Q + K P  +++VFCN I TCRKVEN L+R DR+E R +VL +H+A++ + R  N+  F++    E  L +VCTDR SRG+DF  A V HVVLFDFPRDPSEYVRRVGRT R AG  G+    V+G+QV LA+ IME N KG  +H VP+
Sbjct:  257 KQRHKYSANGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ-----EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 673          
BLAST of EWM25042.1 vs. NCBI_GenBank
Match: gi|1130850767|dbj|GAV69112.1| (DEAD domain-containing protein/Helicase_C domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 394.815 bits (1013), Expect = 2.633e-129
Identity = 208/417 (49.88%), Postives = 281/417 (67.39%), Query Frame = 0
Query:   43 ADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRH-MPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFD--LAVIGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSSR--VERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGR-AGRVGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN 453
             D  FFSRK+F ++G +     +L      RP+ +Q +A+P +++G SCIIA+Q+GSGKTLAYLLP++QRLR      E   GL  +  +SPRVV+L PTAELA+QV S  R+M++  +P R   VTGG   RTQ E L+ GVDVLI TPGR+ YLL+E  + L  ++  VLDE+D+++ D+ F+  L  +  ++P   Q+LFVTATLPV + +++   FP  K + GPG+H+I+P +EEVLVDCSG     +  +T F+ K+  L+Q + K P P++L+FCN I TCRKVEN L+R DR+  R QV  +H+AV  + R +N+  F+     E  L +VCTDRTSRG+DF  A V HVVLFDFPRDPSEYVRRVGRT R AG  G+    V+G+QV LAR IME N KG  +H VP+
Sbjct:  154 TDAHFFSRKSFADLGCTQFMVDSLKHQLFLRPANIQAMAFPPVIEGKSCIIADQSGSGKTLAYLLPVIQRLR-----QEELQGLSISSSQSPRVVILLPTAELASQVFSNCRSMSKTGVPFRSMVVTGGFRQRTQLENLQLGVDVLIATPGRLMYLLKEGFLKLTNLRCAVLDEIDILYKDEDFEASLQSLINSSPVTAQYLFVTATLPVDIYNKLVEVFPDCKVIMGPGMHRISPGLEEVLVDCSGDV-TVKTPDTAFINKKSALLQLVEKTPVPKTLIFCNKIETCRKVENVLKRFDRKGTRLQVFPFHAAVAQETRLENMKEFTKSRPEEESLFLVCTDRTSRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGKGKAFIFVVGKQVSLARKIMERNQKGHPLHDVPS 562          
BLAST of EWM25042.1 vs. NCBI_GenBank
Match: gi|1150087100|ref|XP_020229176.1| (DEAD-box ATP-dependent RNA helicase 50 [Cajanus cajan] >gi|1012342375|gb|KYP53569.1| DEAD-box ATP-dependent RNA helicase 50 [Cajanus cajan])

HSP 1 Score: 392.889 bits (1008), Expect = 2.772e-129
Identity = 200/417 (47.96%), Postives = 286/417 (68.59%), Query Frame = 0
Query:   43 ADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRH-MPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAV--IGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSSRVERPL--IMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGRAGR-VGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN 453
             DT FFS K+F++IG +     +L  +   RPS VQ +A+  + +G +C+IA+Q+GSGKTLAYL P++QRLR  E  G  K        ++PRV+VLAPTAELA+QV    R++++  +P +   VTGG   RTQ E L+QGVDVLI TPGR  +L+ E  + L  ++  VLDEVD++F D+ F++A+  +  ++P  TQ+LFVTATLP  +  ++   FP  + + GPG+H+I+ ++EE++VDCSG   +E+  +T F+ K+D L+Q + ++P PR++VFCN I TCRKVEN+LRR DR+  R QVL +H+A+  + R  +++ F+S   + +  IM+CTDR SRG+DF  A V HV+LFDFPRDPSEYVRRVGRT R  + VG+    V+G+QV LAR IME N KG  +H VP+
Sbjct:  103 TDTNFFSLKSFKQIGCTDYIIQSLQKLSFTRPSHVQAMAFAPVFRGKTCVIADQSGSGKTLAYLAPIIQRLRQEELDGRSKSS-----SQAPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFLFLINEGFLQLTNLRCAVLDEVDILFGDEDFEVALQCLINSSPVDTQYLFVTATLPKNIYSKLVEVFPDCEMIMGPGMHRISSRLEEIVVDCSGEDGQEKTPDTAFLNKKDALLQLVEENPVPRTIVFCNKIETCRKVENSLRRFDRKGNRVQVLPFHAAMTQESRLASMEEFTSPPSKGVSQIMICTDRASRGIDF--AGVDHVMLFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPS 512          
The following BLAST results are available for this feature:
BLAST of EWM25042.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106678|gb|EWM25042.1|0.000e+0100.00dead-box atp-dependent rna helicase 50-like protei... [more]
gi|873234921|emb|CEM01514.1|2.229e-15957.32unnamed protein product [Vitrella brassicaformis C... [more]
gi|298710365|emb|CBJ31982.1|2.478e-14855.19DEAD box helicase [Ectocarpus siliculosus][more]
gi|848901534|ref|XP_012850870.1|3.622e-13149.40PREDICTED: DEAD-box ATP-dependent RNA helicase 50 ... [more]
gi|641827698|gb|KDO46874.1|6.604e-13149.06hypothetical protein CISIN_1g005837mg [Citrus sine... [more]
gi|1173819823|ref|XP_020552097.1|1.166e-13048.20DEAD-box ATP-dependent RNA helicase 50 [Sesamum in... [more]
gi|567898902|ref|XP_006441939.1|2.384e-13048.82hypothetical protein CICLE_v10019165mg [Citrus cle... [more]
gi|568849591|ref|XP_006478533.1|2.587e-13048.82PREDICTED: DEAD-box ATP-dependent RNA helicase 50 ... [more]
gi|1130850767|dbj|GAV69112.1|2.633e-12949.88DEAD domain-containing protein/Helicase_C domain-c... [more]
gi|1150087100|ref|XP_020229176.1|2.772e-12947.96DEAD-box ATP-dependent RNA helicase 50 [Cajanus ca... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5662rna5662Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications