|
|
Properties
| Property Name | Value |
|---|
| Product | endonuclease iii |
| Orig transcript id | gnl|cribi|Naga_100005g119.6745.mrna |
| Orig protein id | gnl|cribi|Naga_100005g119.6745 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:710271..711948 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5322 ID=rna5322|Name=rna5322|organism=Nannochloropsis gaditana|type=mRNA|length=1596bp
CCTCGTCCTTTAATATACTTTGATTATTGCGGAATTAGTACATAAATTCA
AGGTAAAGCAGGGCTTCCAGGCGAGGCTAAGCTCAACTTGTCACCACGGT
TCGAGATGCACCAAAATCAGCGACTCGACCACGTACCACTAGTAGTTTGA
GGCCCGCACAGCTCTTCGAAGAGGACAGATATCTGAATGCCCGTCTTTTG
GAGGAAAAGAGACGAACTACCAGACCATATTTCATTTTTTATAATGTACA
GCGATGCGCAGGACATCCTGGAACGGCGTTACGACCATTTGGGTGTTCCT
GGTCGCAGGCACAGGTGCGCAAGCCTTCTTCACTGTCTCTTCAACACGGC
CTCATTCACTCCTGTCGAGAGCCGCATGTGATCTAAATCAGAATAAGGAC
TCCCTTAAGCAAGCTTCATTTCCGTCTCTTCAATCTCTTCCCGGTCTGGG
CCTCTTAGCACTTAATGTACTGGCCCCTTCTTTGATTCCCCCGTCCGCCC
AGGCCCTGCCTCAGAAGGCGCCTGAAACCAATGCACAAATGTTGCTGATC
GATGCCCTTCCGAAAAAGAACCCTGTGCTTCTGGACATGGCATCTTCGTT
GGCCAAGGTCACCACAGAAGGTAGTGGGAATATTCGCTCGATCGACAGCA
AAGGGAGCAAAGGCATCAAGCCCTGGCCAGAGGTTCAGAAAGCCGCCAGG
AGTGCATCGGGCACAATCGCAGGACGTGGCAAAGAATTAATTAAAGGCGC
CACGGATGAGAAGGCTGCTCAGGCTGTCTTGACAGATCTGAATGTCCGAA
TCGATCAATTGGGGGCAGCCGCCGACGCGCAAAACCGGGAAGCCGCCGTC
ACGGCCCAAGTACAGGCACTCTTGCGCCTTGAACAATTGGGTACCTTGCA
GGTTCCGACCATGCCCTTTCAGCCTCCGACAGTGGAGTACCCGAGCGTTC
CCCAACTGCTGGGCCGAGCTGAGATTGAAATCACAACGCGTGCGGGGAAA
ACGAGGCAGACCCGACAAATGTACGCAATTTTAGACGGGTTCAGTGCTCC
CTTGAGCGCCGGCCAGTTTGTGGATTTGGCGCAGAGGAAGGCCTTCGATC
AAACAAAGATAGTAGCCACGGATGAGTCCTCTGTGACAATCACCGCGGAT
GCTGTAAAGTCCCCAAAGCGCACCGTGCCTCTCGAGATCTTGGTGGAGGG
GGACAAGGAACCCACGTACGGCGAAACTTTGGAGGAGCAGGGTCGGTTCA
AGGAACGCGTGGTCTTACCCTTTAACGCCTATGGGACCTTGGCCATGCTG
CACCCGCTCGACGACCCGAACGGGGGGGCCAATTCCTTCTTCTTCCTGAA
AGCCGACCCAAGCTACACCCCTGCGGGCTTGAATACGCTAGACGGGGCAT
TTAGCGTCATTGGGTACGTCGTGCAGGGTGAGGATGCCTTAGACGACTTG
TTGGCAGGGGATGTGGTCGAAAACGTGAGGGTCCTATCGGGGTCAGAGCT
GCTAAAACAGGGCAAATGACCTTAAATTGCCTTCTAATCGGCCAAATTTG
AAAGAAAGAGATGAAGCTTTGAAAATTGTAATTAGACTTGAAAAAA back to topprotein sequence of rna5322 >rna5322-protein ID=rna5322-protein|Name=rna5322|organism=Nannochloropsis gaditana|type=polypeptide|length=314bp
MAAHSRAPVNADGGGGGHREEGEARGRGAEECGKESEGAAWGGERGAARY
HRREGGVATGGAKDLTGSVAEAVGEASESEAGMGPGSTLLGADAANLQRF
RLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAALPSSEALSEK
LSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIGPTLAPLL
EFLFTRLDEGDKAVGNWVWKAKKAGWDGEERGNSNDVVDRKGDEEAKDGG
SRRSDRIGAAGGRAMSDEEANVEQQGTRGREGQWELRELELHGYVSGREH
GRSQRVADVVVIED back to topmRNA from alignment at CM002465.1:710271..711948+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5322 ID=rna5322|Name=rna5322|organism=Nannochloropsis gaditana|type=mRNA|length=1678bp|location=Sequence derived from alignment at CM002465.1:710271..711948+ (Nannochloropsis gaditana)
GAAAGATGTCTACCTGGGTATGTACAGATTGTACTTACAAAAATCTGCCA
ACAACAGCCTTCTGTGACATGTGTACTGCCGCACGCCCTACCAGTATCGC
ATGCGATGCAAACTGCCTGAGTAATTgcctgaagaaagaggagaaccCTG
AAGTTTTGAGTGTAGGAGGGCAACCTACGGACAAGAGCGACCAAACTGAC
TTTACGTcggaagcaagaaaaggtGAGGCTGTCAAGCATGCGCCAGCCGC
GCCACTTCCCGTGAGTGtcgaggagggtgatggCTGCAACCCTTTTTCTG
TCTTCATGTTCAGAGATGACGACGAAGGCAAAAGTGCTTCAATTCCTGCT
TTGCCGCCCAGGACAAGTATTCTCGCGTCTTCTTTGTCCCTAAAGCGGCC
GTTGAGTAAGACTGCTGTCGGACAGGGATGTGGTGGGACGTCTGCACACA
GCGTCCACGAGAAAGgtagagggaagaagaaagagaaagcaaCGAAACAA
AGCAAATCCCACCACCGACCGCCGACAGGATGTAGTGGGGTCGCTTCAAA
AGATTTTGAAAATGAGAGCGAAGACCAGAAGGAAGCAACGATACTGAAAT
GGCGGCGCATTCTCGGGCCCCTGTCAACgcagacggagggggggggggcc
accgcgaggagggggaggcgagagggagaggagcagagGAATGCGGCAAA
GAGAGTGAAGGAGCGGCATggggcggagaaaggggtgCAGCACGGTACCa
taggagagaaggaggagtagCTACCGGAGGAGCGAAGGACCTGACCGGCT
CAGTGGCTGAAGCGGTCGGAGAGGCAAGTGAAAGCGAGGCGGGCATGGGC
CCCGGATCGACGCTTCTGGGTGCCGACGCTGCCAATCTTCAGCGATTTCG
TCTCTTAGTGGCCGTCATCTTGTCCTCCCGCACGCAAGAGCAAATCGTGC
GACAGGCTATGGAGACTATCTCCCGGGAATACCCAGGGCCGCGCTTTTCC
CCTGACAGCTTTGCAGCGCTCCCATCGTCGGAGGCGCTCTCGGAGAAGTT
ATCTTTCGTCCACTGCAACAAGGTCAAGAGCAAACACATCCTCCAGTCTG
CGGCCACCATCCAGACGGAATTCGGGGGCAGGGTGCCcggccggcgggag
ggacttTTACGCATGGCGGGCATCGGACCCACACTGGCGCCGTTGCTCGA
ATTCCTGTTTACGCGGCTCGACGAGGGGGACAAAGCTGTAGGGAACTGGG
TTTGGAAAGCAAAGAAGGCGGGatgggacggggaagagcgtGGCAACTCG
AATGATGTAgtggacaggaagggggacgaggaggcgaaggatggaggaag
caggagatcGGACCGGATAGGCGCAGCGGGCGGGAGAGCCATGTCGGATG
AAGAAGCTAACGTTGAGCAACAGGGGActagagggcgggaagggcagTGG
GAACTGCGAGAGCTGGAGCTGCATGGCTATGTGTCGGGGAGAGAGCACGG
GAGGAGCCAGCGGGTGGCGGACGTGGTGGTTATAGAAGACTAAGTTTGGG
TGCACAGGCGTGTTTGATTTGAGTGGGAACCAGCCCTTTTCTACATTTTG
CACTTCAAAGATGAAAGCGAACAGCTGTGAATAAATTGAGGGAGAGATGA
ACCCGGTTACTCTCACTTAATGGTGCGG back to topCoding sequence (CDS) from alignment at CM002465.1:710271..711948+ >rna5322 ID=rna5322|Name=rna5322|organism=Nannochloropsis gaditana|type=CDS|length=945bp|location=Sequence derived from alignment at CM002465.1:710271..711948+ (Nannochloropsis gaditana)
ATGGCGGCGCATTCTCGGGCCCCTGTCAACgcagacggaggggggggggg
ccaccgcgaggagggggaggcgagagggagaggagcagagGAATGCGGCA
AAGAGAGTGAAGGAGCGGCATggggcggagaaaggggtgCAGCACGGTAC
CataggagagaaggaggagtagCTACCGGAGGAGCGAAGGACCTGACCGG
CTCAGTGGCTGAAGCGGTCGGAGAGGCAAGTGAAAGCGAGGCGGGCATGG
GCCCCGGATCGACGCTTCTGGGTGCCGACGCTGCCAATCTTCAGCGATTT
CGTCTCTTAGTGGCCGTCATCTTGTCCTCCCGCACGCAAGAGCAAATCGT
GCGACAGGCTATGGAGACTATCTCCCGGGAATACCCAGGGCCGCGCTTTT
CCCCTGACAGCTTTGCAGCGCTCCCATCGTCGGAGGCGCTCTCGGAGAAG
TTATCTTTCGTCCACTGCAACAAGGTCAAGAGCAAACACATCCTCCAGTC
TGCGGCCACCATCCAGACGGAATTCGGGGGCAGGGTGCCcggccggcggg
agggacttTTACGCATGGCGGGCATCGGACCCACACTGGCGCCGTTGCTC
GAATTCCTGTTTACGCGGCTCGACGAGGGGGACAAAGCTGTAGGGAACTG
GGTTTGGAAAGCAAAGAAGGCGGGatgggacggggaagagcgtGGCAACT
CGAATGATGTAgtggacaggaagggggacgaggaggcgaaggatggagga
agcaggagatcGGACCGGATAGGCGCAGCGGGCGGGAGAGCCATGTCGGA
TGAAGAAGCTAACGTTGAGCAACAGGGGActagagggcgggaagggcagT
GGGAACTGCGAGAGCTGGAGCTGCATGGCTATGTGTCGGGGAGAGAGCAC
GGGAGGAGCCAGCGGGTGGCGGACGTGGTGGTTATAGAAGACTAA back to top
|