EWM25451.1, cds5309 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25451.1 vs. NCBI_GenBank
Match: gi|585107212|gb|EWM25451.1| (endonuclease iii [Nannochloropsis gaditana]) HSP 1 Score: 624.394 bits (1609), Expect = 0.000e+0 Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0
Query: 1 MAAHSRAPVNADGGGGGHREEGEARGRGAEECGKESEGAAWGGERGAARYHRREGGVATGGAKDLTGSVAEAVGEASESEAGMGPGSTLLGADAANLQRFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIGPTLAPLLEFLFTRLDEGDKAVGNWVWKAKKAGWDGEERGNSNDVVDRKGDEEAKDGGSRRSDRIGAAGGRAMSDEEANVEQQGTRGREGQWELRELELHGYVSGREHGRSQRVADVVVIED 314
MAAHSRAPVNADGGGGGHREEGEARGRGAEECGKESEGAAWGGERGAARYHRREGGVATGGAKDLTGSVAEAVGEASESEAGMGPGSTLLGADAANLQRFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIGPTLAPLLEFLFTRLDEGDKAVGNWVWKAKKAGWDGEERGNSNDVVDRKGDEEAKDGGSRRSDRIGAAGGRAMSDEEANVEQQGTRGREGQWELRELELHGYVSGREHGRSQRVADVVVIED
Sbjct: 1 MAAHSRAPVNADGGGGGHREEGEARGRGAEECGKESEGAAWGGERGAARYHRREGGVATGGAKDLTGSVAEAVGEASESEAGMGPGSTLLGADAANLQRFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIGPTLAPLLEFLFTRLDEGDKAVGNWVWKAKKAGWDGEERGNSNDVVDRKGDEEAKDGGSRRSDRIGAAGGRAMSDEEANVEQQGTRGREGQWELRELELHGYVSGREHGRSQRVADVVVIED 314
BLAST of EWM25451.1 vs. NCBI_GenBank
Match: gi|298706122|emb|CBJ29215.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 69.707 bits (169), Expect = 5.478e-10 Identity = 58/186 (31.18%), Postives = 86/186 (46.24%), Query Frame = 0
Query: 98 QRFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIGPTLAPLLEFLFTRLDEGDKAVGNWVWKAKKAGWDGEERGNSNDVVDRKGDEEAKDGGSRRSDRIGAAGGRAMSDEEANVEQQGTRGREGQ 283
QRF++LV +LSSR Q +V + + + G + A + + L++ L VH NK K+KHI +SA+ I G VP RR LL + G+GP L +L +F D+ DK G DG D DR DGG D G + G + DEE +++ ++G+
Sbjct: 105 QRFQVLVGAVLSSRAQVSVVDEGLSRLRARSGG--LTAAEMAEV-GQDDLADVLRHVHWNKAKAKHIRESASIIVRRHRGVVPRRRAELLALPGVGPALVEILLNVFDSWDKDDKTESGRQLVDLTGGVDG-------DSTDR-------DGG----DDKGPSHGERIKDEEPTTQRKRIEDQDGE 269
BLAST of EWM25451.1 vs. NCBI_GenBank
Match: gi|737185100|ref|WP_035170920.1| (endonuclease III, partial [Lactobacillus delbrueckii]) HSP 1 Score: 66.2402 bits (160), Expect = 1.820e-9 Identity = 33/95 (34.74%), Postives = 62/95 (65.26%), Query Frame = 0
Query: 99 RFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIG 193
RF+LL AV+LS++T +++V + + ++P +P++ AA S E + +S + K+KH+ + A T+ E+GG+VPG++E L+++AG+G
Sbjct: 36 RFQLLCAVLLSAQTTDKMVNKVTPQLFADFP----TPEAMAA-ASQEEIEVDISHLGLYHSKAKHLKEMAQTLVAEYGGQVPGKKEDLVKLAGVG 125
BLAST of EWM25451.1 vs. NCBI_GenBank
Match: gi|489718748|ref|WP_003622864.1| (endonuclease III [Lactobacillus delbrueckii] >gi|354690089|gb|EHE90044.1| DNA-(apurinic or apyrimidinic site) lyase [Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519]) HSP 1 Score: 66.6254 bits (161), Expect = 1.982e-9 Identity = 33/95 (34.74%), Postives = 62/95 (65.26%), Query Frame = 0
Query: 99 RFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIG 193
RF+LL AV+LS++T +++V + + ++P +P++ AA S E + +S + K+KH+ + A T+ E+GG+VPG++E L+++AG+G
Sbjct: 36 RFQLLCAVLLSAQTTDKMVNKVTPQLFADFP----TPEAMAA-ASQEEIEADISHLGLYHSKAKHLKEMAQTLVAEYGGQVPGKKENLVKLAGVG 125
BLAST of EWM25451.1 vs. NCBI_GenBank
Match: gi|489715520|ref|WP_003619645.1| (endonuclease III [Lactobacillus delbrueckii] >gi|103423087|emb|CAI97808.1| Endonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002] >gi|354689920|gb|EHE89886.1| DNA-(apurinic or apyrimidinic site) lyase [Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632] >gi|659651609|emb|CDR73866.1| Endonuclease III [Lactobacillus delbrueckii subsp. bulgaricus] >gi|761637638|gb|KIY24527.1| endonuclease III [Lactobacillus delbrueckii subsp. bulgaricus] >gi|948923556|gb|KRN37671.1| endonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002] >gi|966625565|gb|ALT47362.1| endonuclease III [Lactobacillus delbrueckii subsp. bulgaricus] >gi|971076961|emb|CUS17121.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III [Lactobacillus delbrueckii subsp. bulgaricus] >gi|1029169901|gb|OAL41034.1| Endonuclease III [Lactobacillus delbrueckii subsp. bulgaricus] >gi|1132404055|gb|APV47292.1| endonuclease III [Lactobacillus delbrueckii subsp. bulgaricus]) HSP 1 Score: 66.6254 bits (161), Expect = 2.185e-9 Identity = 33/95 (34.74%), Postives = 62/95 (65.26%), Query Frame = 0
Query: 99 RFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIG 193
RF+LL AV+LS++T +++V + + ++P +P++ AA S E + +S + K+KH+ + A T+ E+GG+VPG++E L+++AG+G
Sbjct: 36 RFQLLCAVLLSAQTTDKMVNKVTPQLFADFP----TPEAMAA-ASQEEIEADISHLGLYHSKAKHLKEMAQTLVAEYGGQVPGKKENLVKLAGVG 125
BLAST of EWM25451.1 vs. NCBI_GenBank
Match: gi|499997512|ref|WP_011678230.1| (endonuclease III [Lactobacillus delbrueckii] >gi|116093337|gb|ABJ58490.1| Predicted EndoIII-related endonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] >gi|325125711|gb|ADY85041.1| Endonuclease III [Lactobacillus delbrueckii subsp. bulgaricus 2038] >gi|1214881189|emb|SNR19438.1| Endonuclease III [Lactobacillus delbrueckii subsp. bulgaricus]) HSP 1 Score: 66.2402 bits (160), Expect = 3.043e-9 Identity = 33/95 (34.74%), Postives = 62/95 (65.26%), Query Frame = 0
Query: 99 RFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIG 193
RF+LL AV+LS++T +++V + + ++P +P++ AA S E + +S + K+KH+ + A T+ E+GG+VPG++E L+++AG+G
Sbjct: 36 RFQLLCAVLLSAQTTDKMVNKVTPQLFADFP----TPEAMAA-ASQEEIEADISHLGLYHSKAKHLKEMAQTLVAEYGGQVPGKKEDLVKLAGVG 125
BLAST of EWM25451.1 vs. NCBI_GenBank
Match: gi|488967408|ref|WP_002878412.1| (endonuclease III [Lactobacillus delbrueckii] >gi|312280225|gb|ADQ60944.1| Endonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ND02] >gi|325686231|gb|EGD28275.1| endonuclease III [Lactobacillus delbrueckii subsp. lactis DSM 20072] >gi|485598511|gb|EOD02943.1| endonuclease III [Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046] >gi|656120027|emb|CDR84519.1| Endonuclease III [Lactobacillus delbrueckii subsp. lactis] >gi|656122224|emb|CDR80193.1| Endonuclease III [Lactobacillus delbrueckii subsp. lactis] >gi|656123756|emb|CDR82713.1| Endonuclease III [Lactobacillus delbrueckii subsp. lactis] >gi|661119095|emb|CDR77374.1| Endonuclease III [Lactobacillus delbrueckii subsp. lactis] >gi|908969274|gb|KNE30650.1| endonuclease III [Lactobacillus delbrueckii subsp. indicus] >gi|913731926|gb|KNZ38149.1| endonuclease III [Lactobacillus delbrueckii subsp. delbrueckii] >gi|948582574|gb|KRK15835.1| endonuclease III [Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012] >gi|948632024|gb|KRK63472.1| endonuclease iii [Lactobacillus delbrueckii subsp. lactis DSM 20072] >gi|948747686|gb|KRL72230.1| endonuclease iii [Lactobacillus delbrueckii subsp. indicus DSM 15996] >gi|949005443|gb|KRO16235.1| endonuclease iii [Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046] >gi|1110852732|gb|APG67048.1| endonuclease III [Lactobacillus delbrueckii subsp. lactis] >gi|1110856030|gb|APG69342.1| endonuclease III [Lactobacillus delbrueckii subsp. lactis] >gi|1110859954|gb|APG73264.1| endonuclease III [Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046] >gi|1120752743|gb|APP03179.1| endonuclease III [Lactobacillus delbrueckii subsp. indicus] >gi|1120759254|gb|APP09684.1| endonuclease III [Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012] >gi|1151906067|gb|OOV04580.1| endonuclease III [Lactobacillus delbrueckii subsp. lactis] >gi|1151911166|gb|OOV09677.1| endonuclease III [Lactobacillus delbrueckii subsp. lactis DSM 20072] >gi|1193135324|gb|ARR38374.1| endonuclease III [Lactobacillus delbrueckii subsp. delbrueckii]) HSP 1 Score: 66.2402 bits (160), Expect = 3.195e-9 Identity = 33/95 (34.74%), Postives = 62/95 (65.26%), Query Frame = 0
Query: 99 RFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIG 193
RF+LL AV+LS++T +++V + + ++P +P++ AA S E + +S + K+KH+ + A T+ E+GG+VPG++E L+++AG+G
Sbjct: 36 RFQLLCAVLLSAQTTDKMVNKVTPQLFADFP----TPEAMAA-ASQEEIEADISHLGLYHSKAKHLKEMAQTLVAEYGGQVPGKKEDLVKLAGVG 125
BLAST of EWM25451.1 vs. NCBI_GenBank
Match: gi|916036606|ref|WP_050952369.1| (endonuclease III [Lactobacillus delbrueckii] >gi|909359733|gb|KNE74278.1| endonuclease III [Lactobacillus delbrueckii subsp. sunkii] >gi|1110861351|gb|APG74660.1| endonuclease III [Lactobacillus delbrueckii subsp. sunkii]) HSP 1 Score: 66.2402 bits (160), Expect = 3.258e-9 Identity = 33/95 (34.74%), Postives = 62/95 (65.26%), Query Frame = 0
Query: 99 RFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIG 193
RF+LL AV+LS++T +++V + + ++P +P++ AA S E + +S + K+KH+ + A T+ E+GG+VPG++E L+++AG+G
Sbjct: 36 RFQLLCAVLLSAQTTDKMVNKVTPQLFADFP----TPEAMAA-ASQEEIEADISHLGLYHSKAKHLKEMAQTLVAEYGGQVPGKKEDLVKLAGVG 125
BLAST of EWM25451.1 vs. NCBI_GenBank
Match: gi|737184209|ref|WP_035170087.1| (endonuclease III [Lactobacillus delbrueckii] >gi|659650158|emb|CDR75634.1| Endonuclease III [Lactobacillus delbrueckii subsp. bulgaricus]) HSP 1 Score: 65.855 bits (159), Expect = 3.698e-9 Identity = 33/95 (34.74%), Postives = 62/95 (65.26%), Query Frame = 0
Query: 99 RFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIG 193
RF+LL AV+LS++T +++V + + ++P +P++ AA S E + +S + K+KH+ + A T+ E+GG+VPG++E L+++AG+G
Sbjct: 36 RFQLLCAVLLSAQTTDKMVNKVPPQLFADFP----TPEAMAAA-SQEEIEADISHLGLYHSKAKHLKEMAQTLVAEYGGQVPGKKENLVKLAGVG 125
BLAST of EWM25451.1 vs. NCBI_GenBank
Match: gi|224014570|ref|XP_002296947.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968327|gb|EED86675.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 67.3958 bits (163), Expect = 6.795e-9 Identity = 39/128 (30.47%), Postives = 60/128 (46.88%), Query Frame = 0
Query: 99 RFRLLVAVILSSRTQEQIVRQAMETISREYPGPR--------------------FSPDSFAALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIGPTLAPLLEFLFTR 206
RF++L+A L +R QE +VR AM + + + + +P S A ++ LS VH KSK I++++ I +FGG VP + L + GIGP LA +L + TR
Sbjct: 288 RFQVLIAARLHARCQESVVRTAMYNLRKHFSEKQNDEVEGVVQEGAASQSVMRGLTPQSLANADHETEIANLLSSVHYCNTKSKQIVEASQNIMRKFGGEVPESKNQLQEITGIGPKLAEILTVVNTR 415 The following BLAST results are available for this feature:
BLAST of EWM25451.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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