rna5292, rna5292 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5292
Unique Name	rna5292
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1965
Alignment location	CM002465.1:635475..637867 +

Link to JBrowse

Properties


Property Name	Value
Product	glutathione peroxidase
Orig transcript id	gnl\|cribi\|Naga_100005g85.6686.mrna
Orig protein id	gnl\|cribi\|Naga_100005g85.6686
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:635475..637867 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g85	gene5112	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5292	rna5292-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25392.1	cds5279	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:635475..637867+
coding sequence from alignment at CM002465.1:635475..637867+

mRNA sequence

>rna5292 ID=rna5292|Name=rna5292|organism=Nannochloropsis gaditana|type=mRNA|length=1965bp
CCGTGACCATCGTCATCGCTTGTGGCGTCAGGATCTGTGCTCGCTCACTC
AAAAAGAGCGACACACAAAATTGAAGATGGCCCCCTCATCATAATCCAAG
AACAATGCGTTTGACTTCCCACAACCAGTCTCATCAACCTCGTTCGACGG
CAGTGTGACGGGGCTGGTTTTGCGAGCGGCATGGAGGCTCCTTTTTTGGC
TCCAGAGAGCTCTGGCAGCAGCCAAGATTGGAATGTGGCAAGTCAGGAGA
CAGTCATCCAGCGGCATCCGTGGAGGATCCACGGCTCGCGCTACTTTCAG
CTTATTCTCCTCTGTATCTTGATTTTGAATAACGCGGTGGTTTGGGTGGC
CTTTAGCGCGATTACGCCAGCAACGGCAGCAGTCTACGGCGTCTCACCAG
GCTTGGTGAATATTGTGGCACTTTCTTTCCAAATGTTGTTCCTTCCAGGC
ACGATAGCGGGATACATGCTGAAAGAGCGATGGGGTTTACGACTTACACT
TTTGGCCGGAGCATTTATGACAGCAGTGAGCGCGGCTATACGTTTTGTCT
CGCTTTATGTTCCTCCTGTTTCCTTCAGAAATGCCAGCACGGACGGTCAT
GATGTCAACAATGGGGGCTGCGCTTACGCCCTTCTACTGCTCGGCACGTC
CTTAGCTGCGCTTGCTCAGCCTTTGCTGCTCAATACTCCTCCTGATTTGG
CAGTGCATTGGTTTGCGGTGAAAGAGCGAGACCTGGTGACGAGCCTTGCG
TTCATGTGCTCGCCCCTAGGTAGCGCTCTCGGTGTCACACTTGCGCCCCT
CTTTGTCAGTGAAGCGGGGGCCGACACGGAAGAGGACATCTCTGGGAACC
ATCGCAATGATGCCCGAGGCGGGTTGCGGCTATTTCTGCTCGCGCAGCTG
GGGATGGGCGTGGCCACCACTCTCTTGGCGCATGCGGGGGCGACAGACCG
CCCTCCGACCCCGCCGAGCCGAGCGGCCGCACTCGGTAGCCAGCGAGAGG
AGGAGAGGGTAGATTCTTCAGACGCATTAGGCTCGCGCGTGCTTTCTATG
CCCCTCGCCTGGCAGCTTGTGGTGCCGGACCTCCGTCGCTGTCTCCTATG
CAACCCTTCTTTCCTCCTCCTCCTTTTTTGCTTCGGCATCGGTCTTGGTT
TCTTCAACGCCCTCCTTACTCTTCTCGGTCAGCTTCTCGCACCGTGCGGC
TACCCGGAAGCGGAGGCTGGGGCCCTGGGGGGCATTTTCTTGGGCACAGG
CTTGGTGGGCGCCGTGATGGCAGGCCTGCTCATGGACGCCAGTCATCGCT
ACGGCCTCCTTCTCAAGGGCGGGTTCCTTGGCGCTTGGGCTGCCTCCCTC
TTCTTGGTTTTTACACTGCGTCCGGACAACTTCCTTGTCCTAGCCCTCTG
CTTTGGTCTCTTGGGCTTCACGATGCTCCCCCTGCTCCCTGTCGCGATCG
AAAACGGGGTCGAGATCACCTACCCGGATGTACCGGAATTCTTCTCCTCG
GGGCTTTTGCTGAGCGCGGGCAACTTGACAGGAATTCCTTTGGCATTCCT
TTTCGCCTGGACAATCGACAGCTACGAAGGAAGCTGTCGAAAGCTCTGGA
AACCCGCCGCCGTCTTGGTGGTAGTGGTCACCACCGCCTGCGCGCTCCCC
GTCCTGGGCTATCGGCCTCGCGCCTTCGGCAGGTGGGAGGCGGAGAAAGA
GCAGAGGAGAGAGGGGTTGGAGGGCTGTGGACATGATGTGGCGACTCGTG
ATGCTTGAGTCCAGGGAGAGGAGTAATGGAAACACAGCGTTGCGTTCAAA
GGACGGGACAAGATGCTCCACGCCTAGAGGCTTGCCGTGGGAAGTCGTGA
GGAGAGGAGGAATAGCGAGAATGAATATTTCGACTGCGCGAGGCAAAGTA
AATACGTGACCCAAAGTAATGTAAATGAACGCTGTGTAACGCAAAATTAC
GCACATTGCCTCAGC

protein sequence of rna5292

>rna5292-protein ID=rna5292-protein|Name=rna5292|organism=Nannochloropsis gaditana|type=polypeptide|length=274bp
MAKLLSFLLLTQSAVISYGFIGKPCYPTKSGGERHAATTLRMRMTSAGVA
PDVLTFKNGSPLKLSRAAYLQKLAALTLGGVSLAGKSGSASAVPAAEGPD
LNSILLQKAGKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKY
HDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGG
AHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEM
EADILSVLQGKKLPSARKKSLNEY

mRNA from alignment at CM002465.1:635475..637867+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5292 ID=rna5292|Name=rna5292|organism=Nannochloropsis gaditana|type=mRNA|length=2393bp|location=Sequence derived from alignment at CM002465.1:635475..637867+ (Nannochloropsis gaditana)
AGCGAGCACAGATCCTGACGCCACAAGCGATGACGATGGTCACGGCCGCG
CTCGACTCACACCACAGCATCGCACAGACTCGCGAGCACTATGGCGAAAC
TTTTGAGCTTCCTGCTACTGACGCAGAGTGCCGTGATAAGTTACGGCTTT
ATCGGCAAGCCTTGTTACCCGACAAAGTCAGGCGGTGAAAGGCATGCAGC
AACTACCTTGAGAATGAGGATGACCTCCGCTGGCGTAGCGCCCGATGTAT
TGACATTTAAAAATGGCTCGCCCCTTAAGTTATCACGGGCTGCCTATTTG
CAAAAACTGGCAGCCTTGACACTCGGCGGCGTCTCCCTTGCAGGAAAGTC
GGGGAGTGCGAGCGCAGTACCAGCGGCAGAGGGCCCAGACCTTAATTCTA
TTTTGTTGCAAAAGGCAGGAAAATCGGTTCGTTTTGGCGACGCCAAAGGC
AAGAAAGCCACAGTGGTCGTCAACGTGGTACGTTTTCAACAGGAGGGCTT
TCTAAAATATTaagtggaagaggacaacACAGCGGGAGGTTAagttctcc
ttcctcttactTCCTCTCTTCATTCCAACAGGCCTCACAATGTGCATTAA
CTGGAGGTAAAAGCATTTTCCCTCATGCAAAATGAAGGTTACGTTTGCTG
AACCAGAAATCCCACCTTTTGCTCGTAATGAGATGTTAGCTATATGGGGT
GGAAACTCAACCTATGCCTCTTACAGGAAATTATCCAGGCTTGCAAGAAT
TGTACGAGAAATACCATGATCAAGGGCTCGAGATTTtagcctttccctcc
aatcAGGTGAGGTCTTGTATCTTATCAAGGAAAAGTGTCGCATCTGAGTG
TGTCAAACGAGAATATTAATCAGAGACGTACATTTTTTTGCCTTCACAAT
GAAAGTTTGGCTTTCAAGAACCTGATCCTGTAGAAAAGGTGCGAAATGAT
ATGAAGGACCGTTTTGGAGTCGAATTTCCCATCTACGACAAAGTGGACGT
aaacgggggcggggcgcaCCCCTTGTACGCGGCCTTAAAAAAGTATGAGC
CCGAGCTCTCAGGGTACTCGCCCAAATTGTCTTGGAATTTTACGGTCAGT
CTGGGTTTGTCGTGCTTGGGTATCTCTCCCAGATCCTCTGTCGTTTACCT
TTCCTCATATGATCTTGCATCATCCTGCCATTCCGCCACAGAAATTCCTC
ATCAACGCTGACGGAACGCCGGTCCGCCGCTACCAGCCGGGTGTCGACcc
cgaggagatggaggccgATATTTTGAGCGTGCTCCAGGGGAAAAAGCTTC
CTTCGGCCCGCAAGAAAAGCTTGAACGAGTATTAGGAGGAGATAAAGAGC
TTCCGTGTCATCCTTGAAGCGGATCAGGTTTGGGTCAGTGATCTCTCTGT
TTGAGCGCCACAGCAGGTAACACGCCAAAGAACCGAGACATACATACTTT
GGTCGCCTGCGTGCGGCACTTTGATTTCTATTCTAAATAATCTTTTACGA
GGGGCTTCTATCTCTTTAGCGAGTTGCGGCGATTTGTTTTCATCTTGAGT
GAGCAGTGTCGTGAAAGCCCGTATGCCCGGTACCCTAGGGCAAATATCAA
GCTGGTCGTTTTTCTCCCAGTGCCTCTTTTCATTGGTTATCCCTGAAGCA
TAAGCACGCTCTGCCCCGCATGTGCGCCCACTGACAGAcaggccgccacc
tccctcgctttgCGTCCCCTGGATGTTTGCCCCTGTCCTGTTGCCTGAGA
GGAACCTGAGACGCGCCACACTCGCGGCCGCGCAGGTGGGCAATGTCTCT
CCGTGCCGCTGGGAGCCTGGCGCAGGTCAGCACGCACAGTATCCTGGAGA
TGACCTGCATGCAGTTGCAAGGCCTGGTTAAATTTCTGAAGGAGGTTTAC
ATGGTGACCGAGGACTAGAAAAGGCGAGGTCCCGGGCGCTCAGGGGGCGG
GCtaggcggcggggggggagagacggCGGCCTCACGCCTGCACTCACGGT
CAGGAAACTTGGGTCTCCATCGAACGCCGTTATCGACGCCGATCTGATCA
TTTACATCCCCTGCGCAGAGAGGGCTCCTGGGCTTCGCATCTCAAGCGTC
GCGGGTGTGGCGCTTGCTGTTTCCAGCCACTCTCTTTTCTATGCCCGCGA
AGCTCCTCGAGGTATCTCCCCTCCGACTTCCCGCCGTTAAACGGACGATG
AATCAATCACTCCGCGTCAAGCTGTCTCAGCGGAGGGTGTTTGGCTACTG
CTCATCGAAGGAAAGTGCACAAAAAATGAAAACCACGTAAATGAAAAGTG
GAGGTAGGAGTGAGGATGGAACCTAGGCGTGAAAGAGGAGCCACCGTGTG
CATGAGAGCATGGACTAACGTCATCTCTGAACTTCACAGGTTT

Coding sequence (CDS) from alignment at CM002465.1:635475..637867+

>rna5292 ID=rna5292|Name=rna5292|organism=Nannochloropsis gaditana|type=CDS|length=4125bp|location=Sequence derived from alignment at CM002465.1:635475..637867+ (Nannochloropsis gaditana)
ATGGCGAAACTTTTGAGCTTCCTGCTACTGACGCAGAGTGCCGTGATAAG
TTACGGCTTTATCGGCAAGCCTTGTTACCCGACAAAGTCAGGCGGTGAAA
GGCATGCAGCAACTACCTTGAGAATGAGGATGACCTCCGCTGGCGTAGCG
CCCGATGTATTGACATTTAAAAATGGCTCGCCCCTTAAGTTATCACGGGC
TGCCTATTTGCAAAAACTGGCAGCCTTGACACTCGGCGGCGTCTCCCTTG
CAGGAAAGTCGGGGAGTGCGAGCGCAGTACCAGCGGCAGAGGGCCCAGAC
CTTAATTCTATTTTGTTGCAAAAGGCAGGAAAATCGGTTCGTTTTGGCGA
CGCCAAAGGCAAGAAAGCCACAGTGGTCGTCAACGTGGCCTCACAATGTG
CATTAACTGGAGGAAATTATCCAGGCTTGCAAGAATTGTACGAGAAATAC
CATGATCAAGGGCTCGAGATTTtagcctttccctccaatcAGTTTGGCTT
TCAAGAACCTGATCCTGTAGAAAAGGTGCGAAATGATATGAAGGACCGTT
TTGGAGTCGAATTTCCCATCTACGACAAAGTGGACGTaaacgggggcggg
gcgcaCCCCTTGTACGCGGCCTTAAAAAAGTATGAGCCCGAGCTCTCAGG
GTACTCGCCCAAATTGTCTTGGAATTTTACGAAATTCCTCATCAACGCTG
ACGGAACGCCGGTCCGCCGCTACCAGCCGGGTGTCGACcccgaggagatg
gaggccgATATTTTGAGCGTGCTCCAGGGGAAAAAGCTTCCTTCGGCCCG
CAAGAAAAGCTTGAACGAGTATTAGATGGCGAAACTTTTGAGCTTCCTGC
TACTGACGCAGAGTGCCGTGATAAGTTACGGCTTTATCGGCAAGCCTTGT
TACCCGACAAAGTCAGGCGGTGAAAGGCATGCAGCAACTACCTTGAGAAT
GAGGATGACCTCCGCTGGCGTAGCGCCCGATGTATTGACATTTAAAAATG
GCTCGCCCCTTAAGTTATCACGGGCTGCCTATTTGCAAAAACTGGCAGCC
TTGACACTCGGCGGCGTCTCCCTTGCAGGAAAGTCGGGGAGTGCGAGCGC
AGTACCAGCGGCAGAGGGCCCAGACCTTAATTCTATTTTGTTGCAAAAGG
CAGGAAAATCGGTTCGTTTTGGCGACGCCAAAGGCAAGAAAGCCACAGTG
GTCGTCAACGTGGCCTCACAATGTGCATTAACTGGAGGAAATTATCCAGG
CTTGCAAGAATTGTACGAGAAATACCATGATCAAGGGCTCGAGATTTtag
cctttccctccaatcAGTTTGGCTTTCAAGAACCTGATCCTGTAGAAAAG
GTGCGAAATGATATGAAGGACCGTTTTGGAGTCGAATTTCCCATCTACGA
CAAAGTGGACGTaaacgggggcggggcgcaCCCCTTGTACGCGGCCTTAA
AAAAGTATGAGCCCGAGCTCTCAGGGTACTCGCCCAAATTGTCTTGGAAT
TTTACGAAATTCCTCATCAACGCTGACGGAACGCCGGTCCGCCGCTACCA
GCCGGGTGTCGACcccgaggagatggaggccgATATTTTGAGCGTGCTCC
AGGGGAAAAAGCTTCCTTCGGCCCGCAAGAAAAGCTTGAACGAGTATTAG
ATGGCGAAACTTTTGAGCTTCCTGCTACTGACGCAGAGTGCCGTGATAAG
TTACGGCTTTATCGGCAAGCCTTGTTACCCGACAAAGTCAGGCGGTGAAA
GGCATGCAGCAACTACCTTGAGAATGAGGATGACCTCCGCTGGCGTAGCG
CCCGATGTATTGACATTTAAAAATGGCTCGCCCCTTAAGTTATCACGGGC
TGCCTATTTGCAAAAACTGGCAGCCTTGACACTCGGCGGCGTCTCCCTTG
CAGGAAAGTCGGGGAGTGCGAGCGCAGTACCAGCGGCAGAGGGCCCAGAC
CTTAATTCTATTTTGTTGCAAAAGGCAGGAAAATCGGTTCGTTTTGGCGA
CGCCAAAGGCAAGAAAGCCACAGTGGTCGTCAACGTGGCCTCACAATGTG
CATTAACTGGAGGAAATTATCCAGGCTTGCAAGAATTGTACGAGAAATAC
CATGATCAAGGGCTCGAGATTTtagcctttccctccaatcAGTTTGGCTT
TCAAGAACCTGATCCTGTAGAAAAGGTGCGAAATGATATGAAGGACCGTT
TTGGAGTCGAATTTCCCATCTACGACAAAGTGGACGTaaacgggggcggg
gcgcaCCCCTTGTACGCGGCCTTAAAAAAGTATGAGCCCGAGCTCTCAGG
GTACTCGCCCAAATTGTCTTGGAATTTTACGAAATTCCTCATCAACGCTG
ACGGAACGCCGGTCCGCCGCTACCAGCCGGGTGTCGACcccgaggagatg
gaggccgATATTTTGAGCGTGCTCCAGGGGAAAAAGCTTCCTTCGGCCCG
CAAGAAAAGCTTGAACGAGTATTAGATGGCGAAACTTTTGAGCTTCCTGC
TACTGACGCAGAGTGCCGTGATAAGTTACGGCTTTATCGGCAAGCCTTGT
TACCCGACAAAGTCAGGCGGTGAAAGGCATGCAGCAACTACCTTGAGAAT
GAGGATGACCTCCGCTGGCGTAGCGCCCGATGTATTGACATTTAAAAATG
GCTCGCCCCTTAAGTTATCACGGGCTGCCTATTTGCAAAAACTGGCAGCC
TTGACACTCGGCGGCGTCTCCCTTGCAGGAAAGTCGGGGAGTGCGAGCGC
AGTACCAGCGGCAGAGGGCCCAGACCTTAATTCTATTTTGTTGCAAAAGG
CAGGAAAATCGGTTCGTTTTGGCGACGCCAAAGGCAAGAAAGCCACAGTG
GTCGTCAACGTGGCCTCACAATGTGCATTAACTGGAGGAAATTATCCAGG
CTTGCAAGAATTGTACGAGAAATACCATGATCAAGGGCTCGAGATTTtag
cctttccctccaatcAGTTTGGCTTTCAAGAACCTGATCCTGTAGAAAAG
GTGCGAAATGATATGAAGGACCGTTTTGGAGTCGAATTTCCCATCTACGA
CAAAGTGGACGTaaacgggggcggggcgcaCCCCTTGTACGCGGCCTTAA
AAAAGTATGAGCCCGAGCTCTCAGGGTACTCGCCCAAATTGTCTTGGAAT
TTTACGAAATTCCTCATCAACGCTGACGGAACGCCGGTCCGCCGCTACCA
GCCGGGTGTCGACcccgaggagatggaggccgATATTTTGAGCGTGCTCC
AGGGGAAAAAGCTTCCTTCGGCCCGCAAGAAAAGCTTGAACGAGTATTAG
ATGGCGAAACTTTTGAGCTTCCTGCTACTGACGCAGAGTGCCGTGATAAG
TTACGGCTTTATCGGCAAGCCTTGTTACCCGACAAAGTCAGGCGGTGAAA
GGCATGCAGCAACTACCTTGAGAATGAGGATGACCTCCGCTGGCGTAGCG
CCCGATGTATTGACATTTAAAAATGGCTCGCCCCTTAAGTTATCACGGGC
TGCCTATTTGCAAAAACTGGCAGCCTTGACACTCGGCGGCGTCTCCCTTG
CAGGAAAGTCGGGGAGTGCGAGCGCAGTACCAGCGGCAGAGGGCCCAGAC
CTTAATTCTATTTTGTTGCAAAAGGCAGGAAAATCGGTTCGTTTTGGCGA
CGCCAAAGGCAAGAAAGCCACAGTGGTCGTCAACGTGGCCTCACAATGTG
CATTAACTGGAGGAAATTATCCAGGCTTGCAAGAATTGTACGAGAAATAC
CATGATCAAGGGCTCGAGATTTtagcctttccctccaatcAGTTTGGCTT
TCAAGAACCTGATCCTGTAGAAAAGGTGCGAAATGATATGAAGGACCGTT
TTGGAGTCGAATTTCCCATCTACGACAAAGTGGACGTaaacgggggcggg
gcgcaCCCCTTGTACGCGGCCTTAAAAAAGTATGAGCCCGAGCTCTCAGG
GTACTCGCCCAAATTGTCTTGGAATTTTACGAAATTCCTCATCAACGCTG
ACGGAACGCCGGTCCGCCGCTACCAGCCGGGTGTCGACcccgaggagatg
gaggccgATATTTTGAGCGTGCTCCAGGGGAAAAAGCTTCCTTCGGCCCG
CAAGAAAAGCTTGAACGAGTATTAG

Synonyms

Publications