EWM25392.1, cds5279 (CDS) Nannochloropsis gaditana

Overview
NameEWM25392.1
Unique Namecds5279
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:635565..635951 +
Alignment locationCM002465.1:636056..636080 +
Alignment locationCM002465.1:636201..636280 +
Alignment locationCM002465.1:636380..636568 +
Alignment locationCM002465.1:636666..636809 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25392.1
Productglutathione peroxidase
Orig transcript idgnl|cribi|Naga_100005g85.6686.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:635565..635951 +
CM002465.1supercontigCM002465.1:636056..636080 +
CM002465.1supercontigCM002465.1:636201..636280 +
CM002465.1supercontigCM002465.1:636380..636568 +
CM002465.1supercontigCM002465.1:636666..636809 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006950response to stress
GO:0042221response to chemical
GO:0008152metabolic process
GO:0055114oxidation-reduction process
GO:0006979response to oxidative stress
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004602glutathione peroxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR029760GPX_CS
IPR012336Thioredoxin-like_fold
IPR000889Glutathione_peroxidase
Homology
BLAST of EWM25392.1 vs. NCBI_GenBank
Match: gi|585107153|gb|EWM25392.1| (glutathione peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
Query:    1 MAKLLSFLLLTQSAVISYGFIGKPCYPTKSGGERHAATTLRMRMTSAGVAPDVLTFKNGSPLKLSRAAYLQKLAALTLGGVSLAGKSGSASAVPAAEGPDLNSILLQKAGKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVLQGKKLPSARKKSLNEY 274
            MAKLLSFLLLTQSAVISYGFIGKPCYPTKSGGERHAATTLRMRMTSAGVAPDVLTFKNGSPLKLSRAAYLQKLAALTLGGVSLAGKSGSASAVPAAEGPDLNSILLQKAGKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVLQGKKLPSARKKSLNEY
Sbjct:    1 MAKLLSFLLLTQSAVISYGFIGKPCYPTKSGGERHAATTLRMRMTSAGVAPDVLTFKNGSPLKLSRAAYLQKLAALTLGGVSLAGKSGSASAVPAAEGPDLNSILLQKAGKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVLQGKKLPSARKKSLNEY 274          
BLAST of EWM25392.1 vs. NCBI_GenBank
Match: gi|825866530|ref|WP_047152339.1| (glutathione peroxidase [Aneurinibacillus tyrosinisolvens])

HSP 1 Score: 154.836 bits (390), Expect = 1.543e-43
Identity = 74/141 (52.48%), Postives = 100/141 (70.92%), Query Frame = 0
Query:  122 KATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVLQGKK 262
            KA ++VN AS+C  T   Y GLQ+LYEKY +QG EILAFPSNQF  QEP   E+++N  +  +GV FP+++K+DVNG  AHPL+A L +  P L G +  + WNFTKFL+N  G PV+RY P V PEE++A+I+ +L+  K
Sbjct:   24 KALLIVNTASKCGFTP-QYSGLQQLYEKYKEQGFEILAFPSNQFLNQEPGTNEEIQNFCQTAYGVMFPVFEKIDVNGADAHPLFAYLTESTPGLLG-TKAVKWNFTKFLVNKQGIPVKRYAPAVKPEELDAEIIRLLEEGK 162          
BLAST of EWM25392.1 vs. NCBI_GenBank
Match: gi|922330211|ref|XP_003630523.2| (phospholipid hydroperoxide glutathione peroxidase [Medicago truncatula] >gi|657375833|gb|AET04999.2| phospholipid hydroperoxide glutathione peroxidase [Medicago truncatula])

HSP 1 Score: 156.762 bits (395), Expect = 1.848e-43
Identity = 78/151 (51.66%), Postives = 97/151 (64.24%), Query Frame = 0
Query:  110 GKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVLQG 260
            G  V  GD KGK   ++VNVASQC LT  NY  L +LYEKY  +GLEILAFP NQFG QEP  VE+++N +  RF  EFP++DKVDVNG  A P+Y  LK  +  L G   K  WNF+KFL++ +G  V RY P   P  +E D+L +L  
Sbjct:   86 GNDVNLGDYKGK-VLIIVNVASQCGLTNSNYTELSQLYEKYKSKGLEILAFPCNQFGAQEPGSVEEIQNFVCTRFKAEFPVFDKVDVNGATAAPIYKYLKSSKGGLFGDGIK--WNFSKFLVDKNGNVVDRYAPTTSPLSIEKDLLKLLDA 233          
BLAST of EWM25392.1 vs. NCBI_GenBank
Match: gi|922330213|ref|XP_003630521.2| (phospholipid hydroperoxide glutathione peroxidase [Medicago truncatula] >gi|657375834|gb|AET04997.2| phospholipid hydroperoxide glutathione peroxidase [Medicago truncatula])

HSP 1 Score: 154.451 bits (389), Expect = 2.290e-43
Identity = 77/149 (51.68%), Postives = 97/149 (65.10%), Query Frame = 0
Query:  110 GKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVL 258
            G  V  GD KGK   ++VNVASQC LT  NY  L +LYEKY  +GLEILAFP NQFG QEP  VE+++N +  RF  EFP++DKVDVNG  A P+Y  LK  +  L G    + WNF+KFL++ +G  V RY P   P  +E D+L +L
Sbjct:   20 GNDVNLGDYKGK-VLIIVNVASQCGLTNSNYTELSQLYEKYKSKGLEILAFPCNQFGAQEPGSVEEIQNFVCTRFKAEFPVFDKVDVNGATAAPIYKYLKSSKGGLFG--DGIKWNFSKFLVDKNGNVVDRYAPTTSPLSIEKDLLKLL 165          
BLAST of EWM25392.1 vs. NCBI_GenBank
Match: gi|401716808|gb|AFP99878.1| (glutathione peroxidase, partial [Medicago sativa])

HSP 1 Score: 155.992 bits (393), Expect = 3.213e-43
Identity = 78/151 (51.66%), Postives = 97/151 (64.24%), Query Frame = 0
Query:  110 GKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVLQG 260
            G  V  GD KGK   ++VNVASQC LT  NY  L +LYEKY  +GLEILAFP NQFG QEP  VE+++N +  RF  EFP++DKVDVNG  A P+Y  LK  +  L G   K  WNF+KFL++ +G  V RY P   P  +E D+L +L  
Sbjct:   76 GNDVNLGDYKGK-VLIIVNVASQCGLTNSNYTELSQLYEKYKSKGLEILAFPCNQFGAQEPGSVEEIQNFVCTRFKAEFPVFDKVDVNGATAAPIYKYLKSSKGGLFGDGIK--WNFSKFLVDKNGNVVDRYAPTTSPLSIEKDLLKLLDA 223          
BLAST of EWM25392.1 vs. NCBI_GenBank
Match: gi|388508640|gb|AFK42386.1| (unknown [Medicago truncatula])

HSP 1 Score: 155.221 bits (391), Expect = 6.940e-43
Identity = 77/151 (50.99%), Postives = 97/151 (64.24%), Query Frame = 0
Query:  110 GKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVLQG 260
            G  V  GD KGK   ++VNVASQC LT  NY  L +LYEKY  +GLEILAFP NQFG QEP  VE+++N ++ RF   FP++DKVDVNG  A P+Y  LK  +  L G   K  WNF+KFL++ +G  V RY P   P  +E D+L +L  
Sbjct:   86 GNDVNLGDYKGK-VLIIVNVASQCGLTNSNYTELSQLYEKYKSKGLEILAFPCNQFGAQEPGSVEEIQNFVRTRFKAGFPVFDKVDVNGATAAPIYKYLKSSKGGLFGDGIK--WNFSKFLVDKNGNVVDRYAPTTSPLSIEKDLLKLLDA 233          
BLAST of EWM25392.1 vs. NCBI_GenBank
Match: gi|232190|sp|P30708.1|GPX4_NICSY (RecName: Full=Probable phospholipid hydroperoxide glutathione peroxidase; Short=PHGPx; AltName: Full=6P229 >gi|19739|emb|CAA42780.1| unnamed protein product [Nicotiana sylvestris])

HSP 1 Score: 151.754 bits (382), Expect = 2.328e-42
Identity = 78/149 (52.35%), Postives = 95/149 (63.76%), Query Frame = 0
Query:  110 GKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVL 258
            G  V     KGK   ++VNVASQC LT  NY  L E+Y+KY DQGLEILAFP NQFG QEP  +E+++N +  RF  E+PI+DKVDVNG  A PLY  LK  +    G S K  WNF+KFL++ +G  V RY P   P  ME DI  +L
Sbjct:   21 GNDVDLSIYKGK-VLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIK--WNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of EWM25392.1 vs. NCBI_GenBank
Match: gi|698451932|ref|XP_009778797.1| (PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Nicotiana sylvestris] >gi|1025012280|ref|XP_016441615.1| PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Nicotiana tabacum])

HSP 1 Score: 153.68 bits (387), Expect = 2.761e-42
Identity = 78/149 (52.35%), Postives = 95/149 (63.76%), Query Frame = 0
Query:  110 GKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVL 258
            G  V     KGK   ++VNVASQC LT  NY  L E+Y+KY DQGLEILAFP NQFG QEP  +E+++N +  RF  E+PI+DKVDVNG  A PLY  LK  +    G S K  WNF+KFL++ +G  V RY P   P  ME DI  +L
Sbjct:   84 GNDVDLSIYKGK-VLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIK--WNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 229          
BLAST of EWM25392.1 vs. NCBI_GenBank
Match: gi|20138338|sp|Q9FXS3.1|GPX4_TOBAC (RecName: Full=Probable phospholipid hydroperoxide glutathione peroxidase; Short=PHGPx; AltName: Full=Nt-SubC08 >gi|10798756|dbj|BAB16430.1| glutathione peroxidase NtEIG-C08 [Nicotiana tabacum])

HSP 1 Score: 151.369 bits (381), Expect = 3.826e-42
Identity = 77/149 (51.68%), Postives = 95/149 (63.76%), Query Frame = 0
Query:  110 GKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVL 258
            G  V     KGK   ++VNVASQC LT  NY  + E+Y+KY DQGLEILAFP NQFG QEP  +E+++N +  RF  E+PI+DKVDVNG  A PLY  LK  +    G S K  WNF+KFL++ +G  V RY P   P  ME DI  +L
Sbjct:   21 GNDVDLSIYKGK-VLIIVNVASQCGLTNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIK--WNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of EWM25392.1 vs. NCBI_GenBank
Match: gi|593794029|ref|XP_007160053.1| (hypothetical protein PHAVU_002G288700g [Phaseolus vulgaris] >gi|561033468|gb|ESW32047.1| hypothetical protein PHAVU_002G288700g [Phaseolus vulgaris])

HSP 1 Score: 152.91 bits (385), Expect = 6.101e-42
Identity = 76/151 (50.33%), Postives = 95/151 (62.91%), Query Frame = 0
Query:  110 GKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVLQG 260
            G  +  GD KGK   ++VNVASQC LT  NY  L +LYEKY  +GLEILAFP NQFG QEP   E+++  +  RF  EFP++DKVDVNG  A PLY  LK  +  L G    + WNF+KFL++ +G  V RY P   P  ME D+L +L  
Sbjct:   83 GTEINLGDYKGK-VLIIVNVASQCGLTNSNYTELSQLYEKYKQKGLEILAFPCNQFGAQEPGSNEQIQEFVCTRFKAEFPVFDKVDVNGDKADPLYKYLKSSKGGLFG--DNIKWNFSKFLVDKEGKVVDRYAPTTSPLSMEKDLLKLLDA 230          
The following BLAST results are available for this feature:
BLAST of EWM25392.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107153|gb|EWM25392.1|0.000e+0100.00glutathione peroxidase [Nannochloropsis gaditana][more]
gi|825866530|ref|WP_047152339.1|1.543e-4352.48glutathione peroxidase [Aneurinibacillus tyrosinis... [more]
gi|922330211|ref|XP_003630523.2|1.848e-4351.66phospholipid hydroperoxide glutathione peroxidase ... [more]
gi|922330213|ref|XP_003630521.2|2.290e-4351.68phospholipid hydroperoxide glutathione peroxidase ... [more]
gi|401716808|gb|AFP99878.1|3.213e-4351.66glutathione peroxidase, partial [Medicago sativa][more]
gi|388508640|gb|AFK42386.1|6.940e-4350.99unknown [Medicago truncatula][more]
gi|232190|sp|P30708.1|GPX4_NICSY2.328e-4252.35RecName: Full=Probable phospholipid hydroperoxide ... [more]
gi|698451932|ref|XP_009778797.1|2.761e-4252.35PREDICTED: probable phospholipid hydroperoxide glu... [more]
gi|20138338|sp|Q9FXS3.1|GPX4_TOBAC3.826e-4251.68RecName: Full=Probable phospholipid hydroperoxide ... [more]
gi|593794029|ref|XP_007160053.1|6.101e-4250.33hypothetical protein PHAVU_002G288700g [Phaseolus ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5292rna5292Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications