rna5168, rna5168 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5168
Unique Name	rna5168
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1749
Alignment location	CM002465.1:311799..314227 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100032g20.240.mrna
Orig protein id	gnl\|cribi\|Naga_100032g20.240
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:311799..314227 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100032g20	gene4988	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5168	rna5168-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25497.1	cds5156	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:311799..314227-
coding sequence from alignment at CM002465.1:311799..314227-

mRNA sequence

>rna5168 ID=rna5168|Name=rna5168|organism=Nannochloropsis gaditana|type=mRNA|length=1749bp
AAAGTCCAAGGGCTTCGTGGCGGTATTGACATGTTCTCAAGGCATTGATA
TGAACGAATATTATCCCGCCGGCTACATAATACTTTATGGTGGATCTAGA
GATGCGAAGGACGATGTAATTCCTATGTAACCGTTTCACGCTGCCATTTA
TGTCCTTGGTACATTATCAACAGTGTTCAAGCGCTCATAAAATGATCTGC
AACGCAAACTCTTCAATGGCCGCAGTGGCGCTTATCGCGTTGTTGCTGTC
TGTATTTCAGGTCCCGCTTCATGCATCAGGGACACAATCTGATGACAGCA
TCAGCGCTGAAAGCAGCTCGGGCAGCTTCAGCCGATTGTTGGCCTATGAC
CTGCCTTTGCCCCATGATTGGATTCGCGAGTATGAGAAGGACACCAGAGA
CATGTCGCAGTCCTTTTCCTACTCCTACTCTTTTTCATTTGAGTATGCGC
CAACCACATCACCCAGTCTTGTCCCCGCGATAGCTCCCACTATGCAACCG
AATCTGCCTGGCACCATTCCCGTCGTCAACTTGTTCCTCGTAGTAGCTGG
CACACCCGAGGAACAATTTGCGCTCGTCAGCGCGCTTGTCCTCTATTTCA
TTATGGCTTTGGATGTGCAGGAAAGCGACATTTCGGTGGACACGCCGGTT
TTGGAAAGGCTTCTTCACCAAAGTCGCCGCCTTGCAGACACTGATCAAGG
TCGTTTGTGCTCTTCTGGTGCTCCTCAAAACTCTACCAGCATCAGTATCC
GTAACTATGAGGACGCGGCAAAAGTGCAGGATTCTCTTGATGGAATCATG
AATGGCACCATCTCTTTAACAGCTGTGGAAGGTGACAGCACTACTTTCCC
GGTGAAGGATGGCATCTGCCATGGAGAGACAACACTTTCATTTGTTCCTC
CACCTGCTGATACCCTGAACGATAAGAACAAGTCTTCTTCAGAGCCAGAG
CCCCTTTCTGCCACATACATTTCACTCATTGCTGTGGGAGGCGTGGCTAT
TCTGTGCGTTATTATTTTTGTGGCCCGGCGGCGGCGACCTCGTTCTACAG
TGGTTGCGCATAACTAAGAGCATAAACCGCGGAAAGCTCTATATTTGAGT
GTGATGTACTTGGATGATTTTGGACAAAGTCATTTGATGTCTACGCGATC
GAAAAAGGAAAATTGAAAAGAGAGCCAGATATTAAGATTCGGAGTAGGTT
GATTTTTGAAAGTGTATGAGGGTCTTTTCAGCGGTAATTATTTGAACAAC
AGGAAGTCCGGATATGGGAGGATGGGAGGATATGATAGCCGCATTTCCTA
CATGGAGTGTAGGTCACGATGCCCCGGCATCGCCTTCAAGGCCAGTCGTG
GGTCGAATGAGCGGTATTAATAAGCAAGAATACACGTGCATGAAAATATA
GCATAAAGCGCTATACCAAGCTCCTTGTGTGTATATTATGATTCTTTCTT
GATAGATTGGCATTCTTAAGGCATCACAAATACCTACAGAACATGCTTTC
TTATTAGGGTTTCAACATCAAGCGACGATCATCTCCCAACCCCATTTCTT
CCGCAAAACAAAAGCAAGTCGCACGATTATTCGTAGTCATCTGTCGTAGT
GGCCGAATATCGGGGCGCTTGAAGAGCTTACATGTCCTGCTCAAGAACCC
GGAGGGAGAGTGGCAGCATCTGTGACTGATGAAGATGCGCCTGCGCACAT
GCGACGGATGACCATTCCAACGTGTTTGCGACTGAAGAAAATACCCAAG

protein sequence of rna5168

>rna5168-protein ID=rna5168-protein|Name=rna5168|organism=Nannochloropsis gaditana|type=polypeptide|length=255bp
MCFKLPISICCHTHDSFHEQFHACSPQYEKDTRDMSQSFSYSYSFSFEYA
PTTSPSLVPAIAPTMQPNLPGTIPVVNLFLVVAGTPEEQFALVSALVLYF
IMALDVQESDISVDTPVLERLLHQSRRLADTDQGRLCSSGAPQNSTSISI
RNYEDAAKVQDSLDGIMNGTISLTAVEGDSTTFPVKDGICHGETTLSFVP
PPADTLNDKNKSSSEPEPLSATYISLIAVGGVAILCVIIFVARRRRPRST
VVAHN

mRNA from alignment at CM002465.1:311799..314227-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5168 ID=rna5168|Name=rna5168|organism=Nannochloropsis gaditana|type=mRNA|length=2429bp|location=Sequence derived from alignment at CM002465.1:311799..314227- (Nannochloropsis gaditana)
AAAGTCCAAGGGCTTCGTGGCGGTATTGACATGTTCTCAAGGCATTGATA
TGAACGAATATTATCCCGCCGGCTACATAATACTTTATGGTGGATCTAGA
GATGCGAAGGACGATGTAATTCCTATGTAACCGTTTCACGCTGCCATTTA
TGTCCTTGGTACATTATCAACAGTGTTCAAGCGCTCATAAAATGATCTGC
AACGCAAACTCTTCAATGGCCGCAGTGGCGCTTATCGCGTTGTTGCTGTC
TGTATTTCAGGTCCCGCTTCATGCATCAGGGGTACGTTTCATCACCACGG
CGGCACCGTTTCACCCACTTTTCCTGTGTATGGAATTTGACCAAATCTAA
ACTTATACTATAACTCCAACGATATTGAAGACACAATCTGATGACAGCAT
CAGCGCTGAAAGCAGCTCGGGCAGCTTCAGCCGATTGTTGGCCTATGACC
TGCCTTTGCCCCATGATTGGATTCGCGAGGTAAGGCTTGATTGGGTAGAT
TGAGAATTTGCATTCAAATATTCAGCCAATTCTTATTGAGAAATGTTTCT
CGTCAGACTTCTCAATAGCAACATTCGCTGCAACTACGTAAAAAGACCGT
GGCTGGTTATGTTTTGTTCAGCTCCTTGAGACCATGTTCGATGCTTTGAA
TGTAAATGCACTAACAATCTCTTCTCATGTGTTTCAAGCTCCCAATCTCC
ATCTGCTGTCACACTCATGATTCTTTCCACGAACAATTTCATGCATGCTC
GCCCCAGTATGAGAAGGACACCAGAGACATGTCGCAGTCCTTTTCCTACT
CCTACTCTTTTTCATTTGAGTATGCGCCAACCACATCACCCAGTGTAAGT
TGTTCTTGACCTAAGAATGATAAGAGCTGTTTTAGGAAGAATTTCTTCTC
TATTTACTACAAACCCTGATGCCGATATTTCCCCCCGCTTATCTTTCCTT
ATTGTGCTTGAAACCAGCTTGTCCCCGCGATAGCTCCCACTATGCAACCG
AATCTGCCTGGCACCATTCCCGTCGTCAACTTGTTCCTCGTAGTAGCTGG
CACACCCGAGGAACAATTTGCGCTCGTCAGCGCGCTTGTCCTCTATTTCA
TTATGGCTTTGGATGTGCAGGAAAGCGACATTTCGGTGGACACGCCGGTT
TTGGAAAGGCTTCTTCACCAAAGTCGCCGCCTTGCAGACACTGATCAAGG
TCGTTTGTGCTCTTCTGGTGCTCCTCAAAACTCTACCAGCATCAGTATCC
GTAACTATGAGGACGCGGTACGCAGGGACGGGATCTTAGGAGGCTTGATT
AGTCGACAGGCTGCATAACACACGTCTTTCGTACTGAGTTGTCTTTATAT
TTATTTCACCGTAAATAGAAATCCATGTTCAATTGTTTTTTATTTAGAAA
TTACATTAAAAGCGAATCCTTTTCACCCTGCTGTGTACATCGAACAGGCA
AAAGTGCAGGATTCTCTTGATGGAATCATGAATGGCACCATCTCTTTAAC
AGCTGTGGAAGGTGACAGCACTACTTTCCCGGTGAAGGATGGCATCTGCC
ATGGAGAGACAACACTTTCATTTGTTCCTCCACCTGCTGATACCCTGAAC
GATAAGAACAAGTCTTCTTCAGAGCCAGAGCCCCTTTCTGCCACATACAT
TTCACTCATTGCTGTGGGAGGCGTGGCTATTCTGTGCGTTATTATTTTTG
TGGCCCGGCGGCGGCGACCTCGTTCTACAGTGGTTGCGCATAACTAAGAG
CATAAACCGCGGAAAGCTCTATATTTGAGTGTGATGTACTTGGATGATTT
TGGACAAAGTCATTTGATGTCTACGCGATCGAAAAAGGAAAATTGAAAAG
AGAGCCAGATATTAAGATTCGGAGTAGGTTGATTTTTGAAAGTGTATGAG
GGTCTTTTCAGCGGTAATTATTTGAACAACAGGAAGTCCGGATATGGGAG
GATGGGAGGATATGATAGCCGCATTTCCTACATGGAGTGTAGGTCACGAT
GCCCCGGCATCGCCTTCAAGGCCAGTCGTGGGTCGAATGAGCGGTATTAA
TAAGCAAGAATACACGTGCATGAAAATATAGCATAAAGCGCTATACCAAG
CTCCTTGTGTGTATATTATGATTCTTTCTTGATAGATTGGCATTCTTAAG
GCATCACAAATACCTACAGAACATGCTTTCTTATTAGGGTTTCAACATCA
AGCGACGATCATCTCCCAACCCCATTTCTTCCGCAAAACAAAAGCAAGTC
GCACGATTATTCGTAGTCATCTGTCGTAGTGGCCGAATATCGGGGCGCTT
GAAGAGCTTACATGTCCTGCTCAAGAACCCGGAGGGAGAGTGGCAGCATC
TGTGACTGATGAAGATGCGCCTGCGCACATGCGACGGATGACCATTCCAA
CGTGTTTGCGACTGAAGAAAATACCCAAG

Coding sequence (CDS) from alignment at CM002465.1:311799..314227-

>rna5168 ID=rna5168|Name=rna5168|organism=Nannochloropsis gaditana|type=CDS|length=2304bp|location=Sequence derived from alignment at CM002465.1:311799..314227- (Nannochloropsis gaditana)
GCAAAAGTGCAGGATTCTCTTGATGGAATCATGAATGGCACCATCTCTTT
AACAGCTGTGGAAGGTGACAGCACTACTTTCCCGGTGAAGGATGGCATCT
GCCATGGAGAGACAACACTTTCATTTGTTCCTCCACCTGCTGATACCCTG
AACGATAAGAACAAGTCTTCTTCAGAGCCAGAGCCCCTTTCTGCCACATA
CATTTCACTCATTGCTGTGGGAGGCGTGGCTATTCTGTGCGTTATTATTT
TTGTGGCCCGGCGGCGGCGACCTCGTTCTACAGTGGTTGCGCATAACTAA
CTTGTCCCCGCGATAGCTCCCACTATGCAACCGAATCTGCCTGGCACCAT
TCCCGTCGTCAACTTGTTCCTCGTAGTAGCTGGCACACCCGAGGAACAAT
TTGCGCTCGTCAGCGCGCTTGTCCTCTATTTCATTATGGCTTTGGATGTG
CAGGAAAGCGACATTTCGGTGGACACGCCGGTTTTGGAAAGGCTTCTTCA
CCAAAGTCGCCGCCTTGCAGACACTGATCAAGGTCGTTTGTGCTCTTCTG
GTGCTCCTCAAAACTCTACCAGCATCAGTATCCGTAACTATGAGGACGCG
ATGTGTTTCAAGCTCCCAATCTCCATCTGCTGTCACACTCATGATTCTTT
CCACGAACAATTTCATGCATGCTCGCCCCAGTATGAGAAGGACACCAGAG
ACATGTCGCAGTCCTTTTCCTACTCCTACTCTTTTTCATTTGAGTATGCG
CCAACCACATCACCCAGTGCAAAAGTGCAGGATTCTCTTGATGGAATCAT
GAATGGCACCATCTCTTTAACAGCTGTGGAAGGTGACAGCACTACTTTCC
CGGTGAAGGATGGCATCTGCCATGGAGAGACAACACTTTCATTTGTTCCT
CCACCTGCTGATACCCTGAACGATAAGAACAAGTCTTCTTCAGAGCCAGA
GCCCCTTTCTGCCACATACATTTCACTCATTGCTGTGGGAGGCGTGGCTA
TTCTGTGCGTTATTATTTTTGTGGCCCGGCGGCGGCGACCTCGTTCTACA
GTGGTTGCGCATAACTAACTTGTCCCCGCGATAGCTCCCACTATGCAACC
GAATCTGCCTGGCACCATTCCCGTCGTCAACTTGTTCCTCGTAGTAGCTG
GCACACCCGAGGAACAATTTGCGCTCGTCAGCGCGCTTGTCCTCTATTTC
ATTATGGCTTTGGATGTGCAGGAAAGCGACATTTCGGTGGACACGCCGGT
TTTGGAAAGGCTTCTTCACCAAAGTCGCCGCCTTGCAGACACTGATCAAG
GTCGTTTGTGCTCTTCTGGTGCTCCTCAAAACTCTACCAGCATCAGTATC
CGTAACTATGAGGACGCGATGTGTTTCAAGCTCCCAATCTCCATCTGCTG
TCACACTCATGATTCTTTCCACGAACAATTTCATGCATGCTCGCCCCAGT
ATGAGAAGGACACCAGAGACATGTCGCAGTCCTTTTCCTACTCCTACTCT
TTTTCATTTGAGTATGCGCCAACCACATCACCCAGTGCAAAAGTGCAGGA
TTCTCTTGATGGAATCATGAATGGCACCATCTCTTTAACAGCTGTGGAAG
GTGACAGCACTACTTTCCCGGTGAAGGATGGCATCTGCCATGGAGAGACA
ACACTTTCATTTGTTCCTCCACCTGCTGATACCCTGAACGATAAGAACAA
GTCTTCTTCAGAGCCAGAGCCCCTTTCTGCCACATACATTTCACTCATTG
CTGTGGGAGGCGTGGCTATTCTGTGCGTTATTATTTTTGTGGCCCGGCGG
CGGCGACCTCGTTCTACAGTGGTTGCGCATAACTAACTTGTCCCCGCGAT
AGCTCCCACTATGCAACCGAATCTGCCTGGCACCATTCCCGTCGTCAACT
TGTTCCTCGTAGTAGCTGGCACACCCGAGGAACAATTTGCGCTCGTCAGC
GCGCTTGTCCTCTATTTCATTATGGCTTTGGATGTGCAGGAAAGCGACAT
TTCGGTGGACACGCCGGTTTTGGAAAGGCTTCTTCACCAAAGTCGCCGCC
TTGCAGACACTGATCAAGGTCGTTTGTGCTCTTCTGGTGCTCCTCAAAAC
TCTACCAGCATCAGTATCCGTAACTATGAGGACGCGATGTGTTTCAAGCT
CCCAATCTCCATCTGCTGTCACACTCATGATTCTTTCCACGAACAATTTC
ATGCATGCTCGCCCCAGTATGAGAAGGACACCAGAGACATGTCGCAGTCC
TTTTCCTACTCCTACTCTTTTTCATTTGAGTATGCGCCAACCACATCACC
CAGT

Synonyms

Publications