EWM25497.1, cds5156 (CDS) Nannochloropsis gaditana

Overview
NameEWM25497.1
Unique Namecds5156
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:313384..313551 -
Alignment locationCM002465.1:312961..313260 -
Alignment locationCM002465.1:312481..312780 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25497.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100032g20.240.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:313384..313551 -
CM002465.1supercontigCM002465.1:312961..313260 -
CM002465.1supercontigCM002465.1:312481..312780 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM25497.1 vs. NCBI_GenBank
Match: gi|585107263|gb|EWM25497.1| (hypothetical protein Naga_100032g20 [Nannochloropsis gaditana])

HSP 1 Score: 524.628 bits (1350), Expect = 0.000e+0
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0 
Query:    1 MCFKLPISICCHTHDSFHEQFHACSPQYEKDTRDMSQSFSYSYSFSFEYAPTTSPSLVPAIAPTMQPNLPGTIPVVNLFLVVAGTPEEQFALVSALVLYFIMALDVQESDISVDTPVLERLLHQSRRLADTDQGRLCSSGAPQNSTSISIRNYEDAAKVQDSLDGIMNGTISLTAVEGDSTTFPVKDGICHGETTLSFVPPPADTLNDKNKSSSEPEPLSATYISLIAVGGVAILCVIIFVARRRRPRSTVVAHN 255
            MCFKLPISICCHTHDSFHEQFHACSPQYEKDTRDMSQSFSYSYSFSFEYAPTTSPSLVPAIAPTMQPNLPGTIPVVNLFLVVAGTPEEQFALVSALVLYFIMALDVQESDISVDTPVLERLLHQSRRLADTDQGRLCSSGAPQNSTSISIRNYEDAAKVQDSLDGIMNGTISLTAVEGDSTTFPVKDGICHGETTLSFVPPPADTLNDKNKSSSEPEPLSATYISLIAVGGVAILCVIIFVARRRRPRSTVVAHN
Sbjct:    1 MCFKLPISICCHTHDSFHEQFHACSPQYEKDTRDMSQSFSYSYSFSFEYAPTTSPSLVPAIAPTMQPNLPGTIPVVNLFLVVAGTPEEQFALVSALVLYFIMALDVQESDISVDTPVLERLLHQSRRLADTDQGRLCSSGAPQNSTSISIRNYEDAAKVQDSLDGIMNGTISLTAVEGDSTTFPVKDGICHGETTLSFVPPPADTLNDKNKSSSEPEPLSATYISLIAVGGVAILCVIIFVARRRRPRSTVVAHN 255
[Close]
BLAST of EWM25497.1 vs. NCBI_GenBank
Match: gi|585107262|gb|EWM25496.1| (hypothetical protein Naga_100032g20 [Nannochloropsis gaditana])

HSP 1 Score: 465.692 bits (1197), Expect = 2.997e-164
Identity = 229/234 (97.86%), Postives = 230/234 (98.29%), Query Frame = 0 
Query:   22 HACSPQYEKDTRDMSQSFSYSYSFSFEYAPTTSPSLVPAIAPTMQPNLPGTIPVVNLFLVVAGTPEEQFALVSALVLYFIMALDVQESDISVDTPVLERLLHQSRRLADTDQGRLCSSGAPQNSTSISIRNYEDAAKVQDSLDGIMNGTISLTAVEGDSTTFPVKDGICHGETTLSFVPPPADTLNDKNKSSSEPEPLSATYISLIAVGGVAILCVIIFVARRRRPRSTVVAHN 255
            H    +YEKDTRDMSQSFSYSYSFSFEYAPTTSPSLVPAIAPTMQPNLPGTIPVVNLFLVVAGTPEEQFALVSALVLYFIMALDVQESDISVDTPVLERLLHQSRRLADTDQGRLCSSGAPQNSTSISIRNYEDAAKVQDSLDGIMNGTISLTAVEGDSTTFPVKDGICHGETTLSFVPPPADTLNDKNKSSSEPEPLSATYISLIAVGGVAILCVIIFVARRRRPRSTVVAHN
Sbjct:   72 HDWIREYEKDTRDMSQSFSYSYSFSFEYAPTTSPSLVPAIAPTMQPNLPGTIPVVNLFLVVAGTPEEQFALVSALVLYFIMALDVQESDISVDTPVLERLLHQSRRLADTDQGRLCSSGAPQNSTSISIRNYEDAAKVQDSLDGIMNGTISLTAVEGDSTTFPVKDGICHGETTLSFVPPPADTLNDKNKSSSEPEPLSATYISLIAVGGVAILCVIIFVARRRRPRSTVVAHN 305
The following BLAST results are available for this feature:
BLAST of EWM25497.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107263|gb|EWM25497.1|0.000e+0100.00hypothetical protein Naga_100032g20 [Nannochlorops... [more]
gi|585107262|gb|EWM25496.1|2.997e-16497.86hypothetical protein Naga_100032g20 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5168rna5168Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications