rna4981, rna4981 (mRNA) Nannochloropsis gaditana

Overview
Namerna4981
Unique Namerna4981
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length494
Alignment locationCM002464.1:832121..833504 -

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Properties
Property NameValue
ProductSignal peptidase complex subunit 2
Orig transcript idgnl|cribi|Naga_100222g1.2416.mrna
Orig protein idgnl|cribi|Naga_100222g1.2416
GeneSpc2
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:832121..833504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Spc2gene4810Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4981rna4981-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25703.1cds4969Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4981 ID=rna4981|Name=rna4981|organism=Nannochloropsis gaditana|type=mRNA|length=494bp
GGGAGGGAAGAAGGGAGGAGGGGTGCATGGAACCTTGACTATCAGGAGAA
TCAGATGGGTTTCTTCCTCCTCTGCCCCCACTTGCATCTGCTGATGGCCT
CTTATCCCTTCCATGCCAGGCAAATTCTCCATCGGCAAGGTGTTCGACGA
GGAGGGGAATTTTTACGAAGAGGGATTGGCTCGAGAGGTGCAACGGCTCT
TGGACCGTTACAAAAAGCAGATGTGGGACGTGGCAGAGAAGGAGGAGAGG
AAGAGGAAAGGGGGAGAGAAGAAGAAAAAAAAATGAGGGGTGGGGTTGGT
GGGAAAGCAGATCTGGCGTACGAAGGCTCTGCCAGGCGGGACTGGGAGAT
AGAACCTTCCATGACGTTGTGAAAGAAATTAAGAATAAAGACAAGGGTTA
GAATAAAGTGGCAAGGCGCTGGCAATGAGGGACAAGGAAAGGGCTGCCTC
TGAGGGAAAGAGAACAAGTGGAGCGCCTGGGGGAGACAAGACTG
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protein sequence of rna4981

>rna4981-protein ID=rna4981-protein|Name=rna4981|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENF
FYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQL
IVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQD
PPTVSSE
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mRNA from alignment at CM002464.1:832121..833504-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4981 ID=rna4981|Name=rna4981|organism=Nannochloropsis gaditana|type=mRNA|length=1384bp|location=Sequence derived from alignment at CM002464.1:832121..833504- (Nannochloropsis gaditana)
GAAGGAGAGCTCGTACGGCCATCGATATGGACCAATGAACGGGGAATTTG
GTTCGTCAACGAACTATGTCACATGGATGGCTACGATATGCATACGGGAC
TGCTTGAAGACGCAGATTTATGGGTCTCTTGCTTTTTTTAAAGTCACAAT
GTTTTACATCTCCATCCTCCACCTCCTCTCTCAACAGAGCCCTCGACACC
TCTCCTCTCCCACAATTTTGTTTCATTTCTTAAGAGCTGCGACAAGATAC
GCGACATTCAAGAACATAACATCTTCTTAAAACTCCTGCACAAGCGCTTT
ATCTGTCATGGCAGCCCCTCAAGTAGCTTCGTCCACCCCTGCCGACGGTA
AGTTCGAGACTACCCTACCTGCCTCTTTCCTCACTCAGCGCAAGAAGATG
GAAAAATTACAGAGCGCGGAAACCTAGTGATCAAGGTGTGTCGCCGGGAG
AATTAGGCCTGAAATTCAAGGATTATTCTCCCTGGTAATACCTCGATCCT
TAAGTTTGGCCACCGCGCTCTGCAATTCTTCCATCTTCTTGAACTTCATC
TGGCTCCCGGGCGGCCAACGGTTTAGGCGCCTTTCTTTTCCTGTGCACGA
CATCCACCACCACGCTTGACACGACACGCGTTTCTCTCTCTGGTCGTGCC
AATACCCGCCGATAATTTGGCCATAAGATATAGTTTCATGACGCCTTTCT
GCCTTCTGCTGCTCAACCTTATTTGAAACCCTCCCTTGTCCCTACTCTTC
CACTCGAACCCCCTCTTCCACACACAGAGGAAGAAGAGCCCTTACACATC
GATACGGGCGACCAAATGAAAGTGAAACAAGTGCTGGACGAGGCGGTGGT
CAAGGCCATAGTGGACGCGGGATATGAAGGTGAATGCGGGCGTCATTCGT
CCTCCCTCCCTTTGAGTTTTTCGCCCCGTCACGCCCCACCACAACCTTGT
CCGCTCCATCTGCTTTATGTGTTGGAGCTCCTCCCCGTGTCTTTCCCATT
CATTGGATCTCCCTGCTCCCACCATCCCTCCCTCCTTCTCCCCAACTCCC
AGAGAACTTCTTCTACGACAACATCAAACTCGCGCTGATGGTCATTGCAT
GCGTCTTCGCCCTCATCGCTCAATTCTACCCAATGCCTTTCCCTGAATCC
CGTCCCCTGCTGGGAGTCTGTTGCCTCGCCTACTTCCTTGCCAGCACCAT
CATCCAGCTCATCGTCTCCTACGTGGAGCAAGATACCATCCTGACGACCC
AGCCGCTGCGCTCGGGGGGGAAGGCGGGAGAAGCCCTGAAAGTACGGACG
CAGTTTCCCCGTTTTCAGGACGAGTACACGGTGTTTGTGGAGGAAGCGGG
CATGCAGGACCCCCCGACCGTGTCGAGTGAGTAA
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Coding sequence (CDS) from alignment at CM002464.1:832121..833504-

>rna4981 ID=rna4981|Name=rna4981|organism=Nannochloropsis gaditana|type=CDS|length=1422bp|location=Sequence derived from alignment at CM002464.1:832121..833504- (Nannochloropsis gaditana)
AGAACTTCTTCTACGACAACATCAAACTCGCGCTGATGGTCATTGCATGC
GTCTTCGCCCTCATCGCTCAATTCTACCCAATGCCTTTCCCTGAATCCCG
TCCCCTGCTGGGAGTCTGTTGCCTCGCCTACTTCCTTGCCAGCACCATCA
TCCAGCTCATCGTCTCCTACGTGGAGCAAGATACCATCCTGACGACCCAG
CCGCTGCGCTCGGGGGGGAAGGCGGGAGAAGCCCTGAAAGTACGGACGCA
GTTTCCCCGTTTTCAGGACGAGTACACGGTGTTTGTGGAGGAAGCGGGCA
TGCAGGACCCCCCGACCGTGTCGAGTGAGTAAAGGAAGAAGAGCCCTTAC
ACATCGATACGGGCGACCAAATGAAAGTGAAACAAGTGCTGGACGAGGCG
GTGGTCAAGGCCATAGTGGACGCGGGATATGAAGATGGCAGCCCCTCAAG
TAGCTTCGTCCACCCCTGCCGACGAGAACTTCTTCTACGACAACATCAAA
CTCGCGCTGATGGTCATTGCATGCGTCTTCGCCCTCATCGCTCAATTCTA
CCCAATGCCTTTCCCTGAATCCCGTCCCCTGCTGGGAGTCTGTTGCCTCG
CCTACTTCCTTGCCAGCACCATCATCCAGCTCATCGTCTCCTACGTGGAG
CAAGATACCATCCTGACGACCCAGCCGCTGCGCTCGGGGGGGAAGGCGGG
AGAAGCCCTGAAAGTACGGACGCAGTTTCCCCGTTTTCAGGACGAGTACA
CGGTGTTTGTGGAGGAAGCGGGCATGCAGGACCCCCCGACCGTGTCGAGT
GAGTAAAGGAAGAAGAGCCCTTACACATCGATACGGGCGACCAAATGAAA
GTGAAACAAGTGCTGGACGAGGCGGTGGTCAAGGCCATAGTGGACGCGGG
ATATGAAGATGGCAGCCCCTCAAGTAGCTTCGTCCACCCCTGCCGACGAG
AACTTCTTCTACGACAACATCAAACTCGCGCTGATGGTCATTGCATGCGT
CTTCGCCCTCATCGCTCAATTCTACCCAATGCCTTTCCCTGAATCCCGTC
CCCTGCTGGGAGTCTGTTGCCTCGCCTACTTCCTTGCCAGCACCATCATC
CAGCTCATCGTCTCCTACGTGGAGCAAGATACCATCCTGACGACCCAGCC
GCTGCGCTCGGGGGGGAAGGCGGGAGAAGCCCTGAAAGTACGGACGCAGT
TTCCCCGTTTTCAGGACGAGTACACGGTGTTTGTGGAGGAAGCGGGCATG
CAGGACCCCCCGACCGTGTCGAGTGAGTAAAGGAAGAAGAGCCCTTACAC
ATCGATACGGGCGACCAAATGAAAGTGAAACAAGTGCTGGACGAGGCGGT
GGTCAAGGCCATAGTGGACGCGGGATATGAAGATGGCAGCCCCTCAAGTA
GCTTCGTCCACCCCTGCCGACG
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Synonyms
Publications