EWM25703.1, cds4969 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|585107559|gb|EWM25703.1| (Signal peptidase complex subunit 2 [Nannochloropsis gaditana]) HSP 1 Score: 321.242 bits (822), Expect = 4.228e-111 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0 Query: 1 MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE 157 MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE Sbjct: 1 MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE 157
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|553182478|ref|XP_005853734.1| (signal peptidase complex subunit 2 [Nannochloropsis gaditana CCMP526] >gi|422295325|gb|EKU22624.1| signal peptidase complex subunit 2 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 321.627 bits (823), Expect = 1.483e-110 Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0 Query: 1 MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE 157 MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSS+ Sbjct: 1 MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSK 157
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|299115286|emb|CBN75563.1| (Probable Spc2 homolog, Subunit of Signal Peptidase Complex [Ectocarpus siliculosus]) HSP 1 Score: 143.665 bits (361), Expect = 2.051e-40 Identity = 70/136 (51.47%), Postives = 99/136 (72.79%), Query Frame = 0 Query: 13 DEEE--EPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKA-GEALKVRTQFPRFQDEYTVFVEE 145 DE+E P ++TGD +K+KQ++D+AV+KA+++ GYEE+ +N KLA+M +ACVFA+ AQF+P PFPESR LL VCC++YF S + LIV+Y E+D IL T RS ++ G+ + VRT FPRF + +TV EE Sbjct: 2 DEDELIVPQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFCLHLIVTYWEKDLILATA--RSSSRSMGKGIFVRTDFPRFDEMFTVSAEE 135
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|1072232371|gb|OEU17102.1| (microsomal signal peptidase 25 kDa subunit [Fragilariopsis cylindrus CCMP1102] >gi|1072232395|gb|OEU17126.1| microsomal signal peptidase 25 kDa subunit [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 135.576 bits (340), Expect = 4.309e-37 Identity = 69/168 (41.07%), Postives = 99/168 (58.93%), Query Frame = 0 Query: 17 EPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKA---------------------------GEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE 157 E L +D GD +KVKQ+LDE V +++ +E++ +DN KL LM IAC FA++AQF P+PFPESR ++GVCC +YF+ ST++QLI + ++QD IL T+PL GK G ++VR+QF RF + YTV +E +D P V + Sbjct: 2 ELLQVDVGDMIKVKQILDETVAATVLEQ-IDEDYHFDNFKLLLMAIACAFAMVAQFAPLPFPESRIVIGVCCASYFVLSTVLQLITTIIDQDCILLTRPLPKDGKKDDPNDIDIIGRTIFRKSPKDIKNKDLFGYGVRVRSQFERFSEWYTVILEFEQKKDTPCVEQK 168
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|1210514660|dbj|GAX26444.1| (signal peptidase complex subunit 2 [Fistulifera solaris]) HSP 1 Score: 135.191 bits (339), Expect = 8.311e-37 Identity = 68/137 (49.64%), Postives = 94/137 (68.61%), Query Frame = 0 Query: 13 DEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGK-----AGEALKVRTQFPRFQDEYTVFVE 144 ++E E L +D GD +K+KQVLDEAVV A V+ EE + +DN KL +M ACV A +AQF P+PFPESRP+LGVC YFL S I+Q I +++++D IL T+PL + K A +++R+Q PRF + YTV V+ Sbjct: 31 EDELELLQVDLGDMVKMKQVLDEAVVLA-VNQHVEEEYSWDNWKLLIMFAACVSACVAQFVPIPFPESRPILGVCGALYFLLSGILQFITTFIDKDAILLTKPLENAPKTNADMAKYGMRIRSQLPRFSEWYTVIVQ 166
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|219126305|ref|XP_002183401.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405157|gb|EEC45101.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 123.635 bits (309), Expect = 9.881e-33 Identity = 61/143 (42.66%), Postives = 92/143 (64.34%), Query Frame = 0 Query: 20 HIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQP--LRSGGKAGE----ALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSS 156 +D GD +K+KQVLDE V AI++ E++ +DN KL +M ++CVFA+IAQF P+PFPESRP+LGVC YF S I+Q + +++++D IL T+P + + K + L++R+ PRF + Y V +E Q P S+ Sbjct: 1 QVDLGDMVKIKQVLDETVASAILE-NIAEDYGWDNFKLGIMALSCVFAMIAQFAPIPFPESRPVLGVCGALYFALSGILQFVTTFIDKDCILWTKPADISASTKNKDMHLYGLRIRSNLPRFSEWYEVILE---FQKPKQASA 139
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|1210521410|dbj|GAX19742.1| (hypothetical protein FisN_37Lh006 [Fistulifera solaris]) HSP 1 Score: 120.168 bits (300), Expect = 7.225e-31 Identity = 66/137 (48.18%), Postives = 93/137 (67.88%), Query Frame = 0 Query: 13 DEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGK-----AGEALKVRTQFPRFQDEYTVFVE 144 ++E E L +D GD +K+KQVLDEAVV A V+ EE +DN KL +M ACV A +AQF P+PFPESRP+LG+C YF+ S I+Q I +++++D IL T+PL + K A +++R+Q PRF + YTV V+ Sbjct: 33 EDELELLQVDLGDMVKMKQVLDEAVVLA-VNQHVEEEHSWDNWKLLIMFAACVAACVAQFVPIPFPESRPILGICGALYFILSGILQFITTFIDKDAILLTKPLENAPKTNADMAKYGMRIRSQLPRFSEWYTVIVQ 168
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|224004210|ref|XP_002295756.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209585788|gb|ACI64473.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 118.627 bits (296), Expect = 4.343e-30 Identity = 67/163 (41.10%), Postives = 95/163 (58.28%), Query Frame = 0 Query: 19 LHIDTGDQMKVKQVLDEAVVKAIVDAGYE------------ENFFYDNIKLALMVIACVFALIAQF-YPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQP---------LRSGGKA---GEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSS 156 L +D GD +KVKQ+LDE V I G E E++ +DNIKL LM +ACVFA IAQF FP +R LGVCC +YF S I+QL+++++++D I+TT+P +++GG ++VRTQFPRF + YTV +E G ++ V Sbjct: 28 LQVDVGDVIKVKQILDETVAGTIT--GSEDLSAHGDKVKILEDYRHDNIKLFLMALACVFASIAQFGLNTDFPNNRLWLGVCCASYFCLSGILQLMMTFIDKDCIMTTRPVTDPEAIKAIKNGGNKEMDKYGIRVRTQFPRFSEFYTVILEFQGKENSEFVKG 188
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|551641533|ref|XP_005823567.1| (hypothetical protein GUITHDRAFT_89949 [Guillardia theta CCMP2712] >gi|428167631|gb|EKX36587.1| hypothetical protein GUITHDRAFT_89949 [Guillardia theta CCMP2712]) HSP 1 Score: 114.39 bits (285), Expect = 8.409e-29 Identity = 63/143 (44.06%), Postives = 86/143 (60.14%), Query Frame = 0 Query: 12 ADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFY-----PMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEAL-----KVRTQFPRFQDEYTVFVE 144 ++ EE + GD K LD+AVV++ DAG+ E+ F N+KL++ +AC+FALIAQF+ PMPFPESRPLL VC + Y L S +Q+I+++ EQD IL T P +L KV T+ PRF YTV +E Sbjct: 20 SENEEMVKSVYPGDTATTKGFLDDAVVQSFEDAGFGEDHFLSNVKLSMGALACIFALIAQFWPNPFKPMPFPESRPLLLVCTVLYALLSFALQMIMTFYEQDAILYTLPPNETSPFWNSLQKKRVKVSTRLPRFSINYTVTLE 162
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|971516596|dbj|GAQ81603.1| (microsomal signal peptidase complex subunit [Klebsormidium nitens]) HSP 1 Score: 96.2857 bits (238), Expect = 4.566e-22 Identity = 49/137 (35.77%), Postives = 79/137 (57.66%), Query Frame = 0 Query: 21 IDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE 157 I+ D VK+ LDE +AI+D GY E+ F+ N+++A+ + +C A +AQFYP FP + LL VC Y L + +Q + + E++ IL T P ++G L V ++ PRF +YT+ + G +P +VS+ Sbjct: 14 INLLDSFAVKRHLDEVATEAIIDRGYLEDVFFSNVRIAIGLASCGVACLAQFYPQKFPANVTLLMVCIGIYILLNLALQFLAIFKEKNHILFTHP-KTGSYTTTGLAVSSKLPRFSSQYTLRI---GSSEPNSVSAR 146 The following BLAST results are available for this feature:
BLAST of EWM25703.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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