EWM25703.1, cds4969 (CDS) Nannochloropsis gaditana

Overview
NameEWM25703.1
Unique Namecds4969
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:833158..833197 -
Alignment locationCM002464.1:832626..832727 -
Alignment locationCM002464.1:832121..832452 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25703.1
ProductSignal peptidase complex subunit 2
Orig transcript idgnl|cribi|Naga_100222g1.2416.mrna
GeneSpc2
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:833158..833197 -
CM002464.1supercontigCM002464.1:832626..832727 -
CM002464.1supercontigCM002464.1:832121..832452 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008233peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0019538protein metabolic process
GO:0006465signal peptide processing
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005787signal peptidase complex
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR009582SigPept_cplx_su2
Homology
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|585107559|gb|EWM25703.1| (Signal peptidase complex subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 321.242 bits (822), Expect = 4.228e-111
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query:    1 MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE 157
            MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE
Sbjct:    1 MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE 157          
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|553182478|ref|XP_005853734.1| (signal peptidase complex subunit 2 [Nannochloropsis gaditana CCMP526] >gi|422295325|gb|EKU22624.1| signal peptidase complex subunit 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 321.627 bits (823), Expect = 1.483e-110
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0
Query:    1 MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE 157
            MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSS+
Sbjct:    1 MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSK 157          
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|299115286|emb|CBN75563.1| (Probable Spc2 homolog, Subunit of Signal Peptidase Complex [Ectocarpus siliculosus])

HSP 1 Score: 143.665 bits (361), Expect = 2.051e-40
Identity = 70/136 (51.47%), Postives = 99/136 (72.79%), Query Frame = 0
Query:   13 DEEE--EPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKA-GEALKVRTQFPRFQDEYTVFVEE 145
            DE+E   P  ++TGD +K+KQ++D+AV+KA+++ GYEE+   +N KLA+M +ACVFA+ AQF+P PFPESR LL VCC++YF  S  + LIV+Y E+D IL T   RS  ++ G+ + VRT FPRF + +TV  EE
Sbjct:    2 DEDELIVPQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFCLHLIVTYWEKDLILATA--RSSSRSMGKGIFVRTDFPRFDEMFTVSAEE 135          
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|1072232371|gb|OEU17102.1| (microsomal signal peptidase 25 kDa subunit [Fragilariopsis cylindrus CCMP1102] >gi|1072232395|gb|OEU17126.1| microsomal signal peptidase 25 kDa subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 135.576 bits (340), Expect = 4.309e-37
Identity = 69/168 (41.07%), Postives = 99/168 (58.93%), Query Frame = 0
Query:   17 EPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKA---------------------------GEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE 157
            E L +D GD +KVKQ+LDE V   +++   +E++ +DN KL LM IAC FA++AQF P+PFPESR ++GVCC +YF+ ST++QLI + ++QD IL T+PL   GK                            G  ++VR+QF RF + YTV +E    +D P V  +
Sbjct:    2 ELLQVDVGDMIKVKQILDETVAATVLEQ-IDEDYHFDNFKLLLMAIACAFAMVAQFAPLPFPESRIVIGVCCASYFVLSTVLQLITTIIDQDCILLTRPLPKDGKKDDPNDIDIIGRTIFRKSPKDIKNKDLFGYGVRVRSQFERFSEWYTVILEFEQKKDTPCVEQK 168          
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|1210514660|dbj|GAX26444.1| (signal peptidase complex subunit 2 [Fistulifera solaris])

HSP 1 Score: 135.191 bits (339), Expect = 8.311e-37
Identity = 68/137 (49.64%), Postives = 94/137 (68.61%), Query Frame = 0
Query:   13 DEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGK-----AGEALKVRTQFPRFQDEYTVFVE 144
            ++E E L +D GD +K+KQVLDEAVV A V+   EE + +DN KL +M  ACV A +AQF P+PFPESRP+LGVC   YFL S I+Q I +++++D IL T+PL +  K     A   +++R+Q PRF + YTV V+
Sbjct:   31 EDELELLQVDLGDMVKMKQVLDEAVVLA-VNQHVEEEYSWDNWKLLIMFAACVSACVAQFVPIPFPESRPILGVCGALYFLLSGILQFITTFIDKDAILLTKPLENAPKTNADMAKYGMRIRSQLPRFSEWYTVIVQ 166          
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|219126305|ref|XP_002183401.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405157|gb|EEC45101.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 123.635 bits (309), Expect = 9.881e-33
Identity = 61/143 (42.66%), Postives = 92/143 (64.34%), Query Frame = 0
Query:   20 HIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQP--LRSGGKAGE----ALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSS 156
             +D GD +K+KQVLDE V  AI++    E++ +DN KL +M ++CVFA+IAQF P+PFPESRP+LGVC   YF  S I+Q + +++++D IL T+P  + +  K  +     L++R+  PRF + Y V +E    Q P   S+
Sbjct:    1 QVDLGDMVKIKQVLDETVASAILE-NIAEDYGWDNFKLGIMALSCVFAMIAQFAPIPFPESRPVLGVCGALYFALSGILQFVTTFIDKDCILWTKPADISASTKNKDMHLYGLRIRSNLPRFSEWYEVILE---FQKPKQASA 139          
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|1210521410|dbj|GAX19742.1| (hypothetical protein FisN_37Lh006 [Fistulifera solaris])

HSP 1 Score: 120.168 bits (300), Expect = 7.225e-31
Identity = 66/137 (48.18%), Postives = 93/137 (67.88%), Query Frame = 0
Query:   13 DEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGK-----AGEALKVRTQFPRFQDEYTVFVE 144
            ++E E L +D GD +K+KQVLDEAVV A V+   EE   +DN KL +M  ACV A +AQF P+PFPESRP+LG+C   YF+ S I+Q I +++++D IL T+PL +  K     A   +++R+Q PRF + YTV V+
Sbjct:   33 EDELELLQVDLGDMVKMKQVLDEAVVLA-VNQHVEEEHSWDNWKLLIMFAACVAACVAQFVPIPFPESRPILGICGALYFILSGILQFITTFIDKDAILLTKPLENAPKTNADMAKYGMRIRSQLPRFSEWYTVIVQ 168          
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|224004210|ref|XP_002295756.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209585788|gb|ACI64473.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 118.627 bits (296), Expect = 4.343e-30
Identity = 67/163 (41.10%), Postives = 95/163 (58.28%), Query Frame = 0
Query:   19 LHIDTGDQMKVKQVLDEAVVKAIVDAGYE------------ENFFYDNIKLALMVIACVFALIAQF-YPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQP---------LRSGGKA---GEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSS 156
            L +D GD +KVKQ+LDE V   I   G E            E++ +DNIKL LM +ACVFA IAQF     FP +R  LGVCC +YF  S I+QL+++++++D I+TT+P         +++GG        ++VRTQFPRF + YTV +E  G ++   V  
Sbjct:   28 LQVDVGDVIKVKQILDETVAGTIT--GSEDLSAHGDKVKILEDYRHDNIKLFLMALACVFASIAQFGLNTDFPNNRLWLGVCCASYFCLSGILQLMMTFIDKDCIMTTRPVTDPEAIKAIKNGGNKEMDKYGIRVRTQFPRFSEFYTVILEFQGKENSEFVKG 188          
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|551641533|ref|XP_005823567.1| (hypothetical protein GUITHDRAFT_89949 [Guillardia theta CCMP2712] >gi|428167631|gb|EKX36587.1| hypothetical protein GUITHDRAFT_89949 [Guillardia theta CCMP2712])

HSP 1 Score: 114.39 bits (285), Expect = 8.409e-29
Identity = 63/143 (44.06%), Postives = 86/143 (60.14%), Query Frame = 0
Query:   12 ADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFY-----PMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEAL-----KVRTQFPRFQDEYTVFVE 144
            ++ EE    +  GD    K  LD+AVV++  DAG+ E+ F  N+KL++  +AC+FALIAQF+     PMPFPESRPLL VC + Y L S  +Q+I+++ EQD IL T P         +L     KV T+ PRF   YTV +E
Sbjct:   20 SENEEMVKSVYPGDTATTKGFLDDAVVQSFEDAGFGEDHFLSNVKLSMGALACIFALIAQFWPNPFKPMPFPESRPLLLVCTVLYALLSFALQMIMTFYEQDAILYTLPPNETSPFWNSLQKKRVKVSTRLPRFSINYTVTLE 162          
BLAST of EWM25703.1 vs. NCBI_GenBank
Match: gi|971516596|dbj|GAQ81603.1| (microsomal signal peptidase complex subunit [Klebsormidium nitens])

HSP 1 Score: 96.2857 bits (238), Expect = 4.566e-22
Identity = 49/137 (35.77%), Postives = 79/137 (57.66%), Query Frame = 0
Query:   21 IDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE 157
            I+  D   VK+ LDE   +AI+D GY E+ F+ N+++A+ + +C  A +AQFYP  FP +  LL VC   Y L +  +Q +  + E++ IL T P ++G      L V ++ PRF  +YT+ +   G  +P +VS+ 
Sbjct:   14 INLLDSFAVKRHLDEVATEAIIDRGYLEDVFFSNVRIAIGLASCGVACLAQFYPQKFPANVTLLMVCIGIYILLNLALQFLAIFKEKNHILFTHP-KTGSYTTTGLAVSSKLPRFSSQYTLRI---GSSEPNSVSAR 146          
The following BLAST results are available for this feature:
BLAST of EWM25703.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107559|gb|EWM25703.1|4.228e-111100.00Signal peptidase complex subunit 2 [Nannochloropsi... [more]
gi|553182478|ref|XP_005853734.1|1.483e-11099.36signal peptidase complex subunit 2 [Nannochloropsi... [more]
gi|299115286|emb|CBN75563.1|2.051e-4051.47Probable Spc2 homolog, Subunit of Signal Peptidase... [more]
gi|1072232371|gb|OEU17102.1|4.309e-3741.07microsomal signal peptidase 25 kDa subunit [Fragil... [more]
gi|1210514660|dbj|GAX26444.1|8.311e-3749.64signal peptidase complex subunit 2 [Fistulifera so... [more]
gi|219126305|ref|XP_002183401.1|9.881e-3342.66predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1210521410|dbj|GAX19742.1|7.225e-3148.18hypothetical protein FisN_37Lh006 [Fistulifera sol... [more]
gi|224004210|ref|XP_002295756.1|4.343e-3041.10predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551641533|ref|XP_005823567.1|8.409e-2944.06hypothetical protein GUITHDRAFT_89949 [Guillardia ... [more]
gi|971516596|dbj|GAQ81603.1|4.566e-2235.77microsomal signal peptidase complex subunit [Klebs... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4981rna4981Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications