Spc2, gene4810 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Spc2
Unique Name	gene4810
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002464.1:832121..833504 -

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100222g1
Gene biotype	protein_coding
Gene	Spc2
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:832121..833504 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
GO annotation for N. gaditana B31	2020-04-08
PRJNA174770	2019-07-03
PXD008499	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0009987	cellular process
GO:0019538	protein metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL007	ngnoL007	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region
ngnoL006	ngnoL006	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G03380	NO12G03380	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna4981	rna4981-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna4981	rna4981	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna4981

>rna4981-protein ID=rna4981-protein|Name=rna4981|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MAAPQVASSTPADEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENF
FYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQL
IVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQD
PPTVSSE

Synonyms

Publications