NO12G03380, NO12G03380 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03380 vs. NCBI_GenBank
Match: XP_005853734.1 (signal peptidase complex subunit 2 [Nannochloropsis gaditana CCMP526] >EKU22624.1 signal peptidase complex subunit 2 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 214.2 bits (544), Expect = 2.700e-52 Identity = 105/136 (77.21%), Postives = 119/136 (87.50%), Query Frame = 0 Query: 1 MVVACAFAMVAQFYPMPFPESRPLLGVCCLAYFLASTVIQLIVSYAEQDAILTTQPL-EGMKEG-GLRVRTQFPRFQDVYTVILEEVGVKEPPTVSSKFSIGTVFDEEGNFYEEGLAQEVKALVDRYRKKRWDAPE 135 MV+AC FA++AQFYPMPFPESRPLLGVCCLAYFLAST+IQLIVSY EQD ILTTQPL G K G L+VRTQFPRFQD YTV +EE G+++PPTVSSKFSIG VFDEEGNFYEEGLA+EV+ L+DRY+K+ WD E Sbjct: 60 MVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSKFSIGKVFDEEGNFYEEGLAREVQRLLDRYKKQMWDVAE 195
BLAST of NO12G03380 vs. NCBI_GenBank
Match: EWM25703.1 (Signal peptidase complex subunit 2 [Nannochloropsis gaditana]) HSP 1 Score: 153.3 bits (386), Expect = 5.700e-34 Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 0 Query: 1 MVVACAFAMVAQFYPMPFPESRPLLGVCCLAYFLASTVIQLIVSYAEQDAILTTQPL-EGMKEG-GLRVRTQFPRFQDVYTVILEEVGVKEPPTVSSK 97 MV+AC FA++AQFYPMPFPESRPLLGVCCLAYFLAST+IQLIVSY EQD ILTTQPL G K G L+VRTQFPRFQD YTV +EE G+++PPTVSS+ Sbjct: 60 MVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSE 157
BLAST of NO12G03380 vs. NCBI_GenBank
Match: OEU17102.1 (microsomal signal peptidase 25 kDa subunit [Fragilariopsis cylindrus CCMP1102] >OEU17126.1 microsomal signal peptidase 25 kDa subunit [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 124.0 bits (310), Expect = 3.700e-25 Identity = 76/170 (44.71%), Postives = 97/170 (57.06%), Query Frame = 0 Query: 1 MVVACAFAMVAQFYPMPFPESRPLLGVCCLAYFLASTVIQLIVSYAEQDAILTTQPL--EGMKEG---------------------------GLRVRTQFPRFQDVYTVILEEVGVKEPPTVSSKFSIGTVFDEEGNFYEEGLAQEVKALVDRYRKKRWDAPEGKGEKKK 142 M +ACAFAMVAQF P+PFPESR ++GVCC +YF+ STV+QLI + +QD IL T+PL +G K+ G+RVR+QF RF + YTVILE K+ P V K+S+G FD EG F E GL EV+ L R +D + EKKK Sbjct: 44 MAIACAFAMVAQFAPLPFPESRIVIGVCCASYFVLSTVLQLITTIIDQDCILLTRPLPKDGKKDDPNDIDIIGRTIFRKSPKDIKNKDLFGYGVRVRSQFERFSEWYTVILEFEQKKDTPCVEQKWSVGQFFDTEGMFDEIGLQMEVEKLYRRLEDADYDI-KSAAEKKK 212
BLAST of NO12G03380 vs. NCBI_GenBank
Match: GAX26444.1 (signal peptidase complex subunit 2 [Fistulifera solaris]) HSP 1 Score: 123.6 bits (309), Expect = 4.900e-25 Identity = 67/146 (45.89%), Postives = 93/146 (63.70%), Query Frame = 0 Query: 1 MVVACAFAMVAQFYPMPFPESRPLLGVCCLAYFLASTVIQLIVSYAEQDAILTTQPLEG-------MKEGGLRVRTQFPRFQDVYTVILE---EVGVKEPPTVSSKFSIGTVFDEEGNFYEEGLAQEVKALVDRYRKKRWDAPEGK 137 M AC A VAQF P+PFPESRP+LGVC YFL S ++Q I ++ ++DAIL T+PLE M + G+R+R+Q PRF + YTVI++ E P V +S+G FD+EG F E GLAQ V L++R++ ++D P+ K Sbjct: 77 MFAACVSACVAQFVPIPFPESRPILGVCGALYFLLSGILQFITTFIDKDAILLTKPLENAPKTNADMAKYGMRIRSQLPRFSEWYTVIVQFQLEDKNAVSPYVEQTWSVGQFFDKEGYFDEVGLAQRVDQLLERFKAGKFDEPKSK 222
BLAST of NO12G03380 vs. NCBI_GenBank
Match: GAX19742.1 (hypothetical protein FisN_37Lh006 [Fistulifera solaris]) HSP 1 Score: 122.1 bits (305), Expect = 1.400e-24 Identity = 65/146 (44.52%), Postives = 95/146 (65.07%), Query Frame = 0 Query: 1 MVVACAFAMVAQFYPMPFPESRPLLGVCCLAYFLASTVIQLIVSYAEQDAILTTQPLEG-------MKEGGLRVRTQFPRFQDVYTVILE-EVGVKE--PPTVSSKFSIGTVFDEEGNFYEEGLAQEVKALVDRYRKKRWDAPEGK 137 M AC A VAQF P+PFPESRP+LG+C YF+ S ++Q I ++ ++DAIL T+PLE M + G+R+R+Q PRF + YTVI++ ++ K P V +S+G FD+EG F E GLAQ V L++R++ ++D P+ K Sbjct: 79 MFAACVAACVAQFVPIPFPESRPILGICGALYFILSGILQFITTFIDKDAILLTKPLENAPKTNADMAKYGMRIRSQLPRFSEWYTVIVQFQLDDKNAVSPYVEQTWSVGQFFDKEGYFDEVGLAQRVDQLLERFKAGKFDEPKSK 224
BLAST of NO12G03380 vs. NCBI_GenBank
Match: XP_002183401.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC45101.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 115.2 bits (287), Expect = 1.700e-22 Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 0 Query: 1 MVVACAFAMVAQFYPMPFPESRPLLGVCCLAYFLASTVIQLIVSYAEQDAILTTQPLE--------GMKEGGLRVRTQFPRFQDVYTVILEEVGVKE---PPTVSSKFSIGTVFDEEGNFYEEGLAQEVKALVDRYRKKRWDAPEGKGEKKK 142 M ++C FAM+AQF P+PFPESRP+LGVC YF S ++Q + ++ ++D IL T+P + M GLR+R+ PRF + Y VILE K+ P V +SIG FD+EG F E GL+QE+ L R+ K +D+ G EKK+ Sbjct: 40 MALSCVFAMIAQFAPIPFPESRPVLGVCGALYFALSGILQFVTTFIDKDCILWTKPADISASTKNKDMHLYGLRIRSNLPRFSEWYEVILEFQKPKQASASPMVKHTWSIGQFFDKEGYFDEIGLSQEIDKLFKRFEAKDYDS-AGSDEKKR 190
BLAST of NO12G03380 vs. NCBI_GenBank
Match: CBN75563.1 (Probable Spc2 homolog, Subunit of Signal Peptidase Complex [Ectocarpus siliculosus]) HSP 1 Score: 114.0 bits (284), Expect = 3.900e-22 Identity = 61/129 (47.29%), Postives = 80/129 (62.02%), Query Frame = 0 Query: 1 MVVACAFAMVAQFYPMPFPESRPLLGVCCLAYFLASTVIQLIVSYAEQDAILTTQPLEGMKEG-GLRVRTQFPRFQDVYTVILEEVGVKEPPTVSSKFSIGTVFDEEGNFYEEGLAQEVKALVDRYRKK 129 M +AC FA+ AQF+P PFPESR LL VCC++YF S + LIV+Y E+D IL T G G+ VRT FPRF +++TV EE P + ++++G FD EGNF E G+ VK LV R K+ Sbjct: 51 MALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFCLHLIVTYWEKDLILATARSSSRSMGKGIFVRTDFPRFDEMFTVSAEERKPGSKP-IEEQWNVGKYFDYEGNFDEWGMGDAVKKLVTRLEKR 178
BLAST of NO12G03380 vs. NCBI_GenBank
Match: XP_002295756.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64473.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 111.7 bits (278), Expect = 1.900e-21 Identity = 61/149 (40.94%), Postives = 90/149 (60.40%), Query Frame = 0 Query: 1 MVVACAFAMVAQF-YPMPFPESRPLLGVCCLAYFLASTVIQLIVSYAEQDAILTTQP------LEGMKEG--------GLRVRTQFPRFQDVYTVILEEVGVKEPPTVSSKFSIGTVFDEEGNFYEEGLAQEVKALVDRYRKKRWDAPE 135 M +AC FA +AQF FP +R LGVCC +YF S ++QL++++ ++D I+TT+P ++ +K G G+RVRTQFPRF + YTVILE G + V +S+G FD +G F EEG+ E++ L R+ ++D PE Sbjct: 79 MALACVFASIAQFGLNTDFPNNRLWLGVCCASYFCLSGILQLMMTFIDKDCIMTTRPVTDPEAIKAIKNGGNKEMDKYGIRVRTQFPRFSEFYTVILEFQGKENSEFVKGTWSVGHFFDVDGFFDEEGMQIEIEELYQRFEAGKFDKPE 227
BLAST of NO12G03380 vs. NCBI_GenBank
Match: EJK77865.1 (hypothetical protein THAOC_00270 [Thalassiosira oceanica]) HSP 1 Score: 110.2 bits (274), Expect = 5.600e-21 Identity = 65/153 (42.48%), Postives = 87/153 (56.86%), Query Frame = 0 Query: 1 MVVACAFAMVAQF-YPMPFPESRPLLGVCCLAYFLASTVIQLIVSYAEQDAILTTQPLE-----------GMKEGGLRVRTQFPRFQDVYTVILEEVGVKEPP-TVSSKFSIGTVFDEEGNFYEEGLAQEVKALVDRYRKKRWDAPEGKGEKK 141 M AC FA AQF FPE+R LLG C YF S V+QLI+++ ++D I+ T+PLE MK G+RVR+ FPRF + YTV LE G + PP V +S+G FD EG F E G+ E++ L R+ ++D PE G+ K Sbjct: 79 MFTACCFAAFAQFALAKDFPENRILLGFCVAVYFALSGVLQLIITFVDKDCIMITRPLEDETAIKLVKNKDMKNFGIRVRSDFPRFSEFYTVKLEFQGKEAPPGYVEQTWSVGKFFDVEGYFDEVGMMNEIEKLYQRFEAGKFDKPEKDGKVK 231
BLAST of NO12G03380 vs. NCBI_GenBank
Match: XP_005823567.1 (hypothetical protein GUITHDRAFT_89949 [Guillardia theta CCMP2712] >EKX36587.1 hypothetical protein GUITHDRAFT_89949 [Guillardia theta CCMP2712]) HSP 1 Score: 86.7 bits (213), Expect = 6.600e-14 Identity = 52/141 (36.88%), Postives = 81/141 (57.45%), Query Frame = 0 Query: 3 VACAFAMVAQFY-----PMPFPESRPLLGVCCLAYFLASTVIQLIVSYAEQDAILTTQP-------LEGMKEGGLRVRTQFPRFQDVYTVILE--EVGVKEPPTVSSKFSIGTVFDEEGNFYEEGLAQEVKALVDRYRKKR 130 +AC FA++AQF+ PMPFPESRPLL VC + Y L S +Q+I+++ EQDAIL T P +++ ++V T+ PRF YTV LE + + T + + F+E G F+E+ ++++AL+ K+ Sbjct: 70 LACIFALIAQFWPNPFKPMPFPESRPLLLVCTVLYALLSFALQMIMTFYEQDAILYTLPPNETSPFWNSLQKKRVKVSTRLPRFSINYTVTLEVKDGSGQVVDTHKAVLKLTDYFEENGTFHEDFFMEDIEALISALAAKK 210 The following BLAST results are available for this feature:
BLAST of NO12G03380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03380 ID=NO12G03380|Name=NO12G03380|organism=Nannochloropsis oceanica|type=gene|length=3609bpback to top protein sequence of NO12G03380.2 >NO12G03380.2-protein ID=NO12G03380.2-protein|Name=NO12G03380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=144bpback to top protein sequence of NO12G03380.1 >NO12G03380.1-protein ID=NO12G03380.1-protein|Name=NO12G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bpback to top Synonyms
Publications
|