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Properties
| Property Name | Value |
|---|
| Product | activating transcription factor 6 |
| Orig transcript id | gnl|cribi|Naga_100087g2.1106.mrna |
| Orig protein id | gnl|cribi|Naga_100087g2.1106 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:768689..772463 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4960 ID=rna4960|Name=rna4960|organism=Nannochloropsis gaditana|type=mRNA|length=2796bp
GGCTAATTTGTTGAGAATGTAAAATCATTCGAGTAACGCCCCCCCCGTTG
CCGCCTATCCGAGGAATGCTACAAGTTGGTGTTTCCGTGTCAAACTCCTC
CATTGGTCACCGACGCGAATACGCAAGCCTACTGTCACCGCTTTTTCATC
ATCATACATGCGATATTGATTTCCGGGTGTTTTTAGACTCTTGTTGACGG
ACAGACTACGTGTGTTCACCCAAGTTCAAACACCCCCCCCCCTCTCCCCT
TCAGAGTACGCACCTCGCGAAATTTGGCCGACGGGCTTCTCCTTGTTCAC
GCCTTTGGACGCTTGACCCCTGCAGCGAGCAAACAAGCCCACGGTGTTGC
ACACGATCATATCATAATTACTCGAAGGCTCGCTGTCTTCTCGGTTGTTG
GAACCCGGTCGTGGTAAATGCTGGTAAAGCTGGAGCTTTTCCCTGCATTT
GTTGTCTCCTTTCTGCCAGGCACCTGAGGCAACAAGTGTACCACAGCGCG
TGCATTCACCCCTACAGCTGGCATGACAACAGATGGTGCTCTGGATGAGC
AGTCCTATCTCATGGCCATGAAGGAGGAGATTGAGTCAGCTCTGGATGCG
GCACCAGGAGGCAACAACGATATCAACACTCCCGGTGACAAGCTGTCCCC
ACCAGCCCTGCAAGACTGTGATATCGCTATCTCCAAAACCAAGCCTCAAA
CCGCTGCCGTGGGTATAGATTTGCTGATGCGTAACAGTGCCCAGGACATC
CACCCAGACCCGGTCTCGAACAGCAAAGGTTTTGAGGACAGGATATCGGG
GAGGACGGATGATTGCGCGGGAGGCATCCATTCGAACACCTCCTCGTCGT
CTTCAGCGCCCCCTTCGGAGGCCTCTACCTCGGTGTCTGCATGGGTAGGC
CAAGAGGACTCGACTGGAAGCAGCACAAGTAGCAGCCGGCAAGGTGGGGA
GGATCACGGGTCAAGTAATGTGACAGCTTCGACCACGTCTATCGGCGCAA
GTACTACGTCTTCGCAGGCCGCTGAACGCCGACGCGCCCGGGCCCGGAAA
ATGGGCCTCTTACAAAACCGGGGAGAGATGCTCCTGTCGTCCTCCCAACG
ACACCTCCAGGAACACCCGTACCAGATTAAAGAGGACGATGGGGACAGGG
AGGGGCTGGCGGGCCTCGCGTGCGACAGCCCACCAGGGAGCTGCTCCAGC
TCCGTGACGGGAATGGTCACCTCACGAATGAGACGCGACGCGGAAGACAT
GGCCGCAGCCGTGGCTCTGACCAAGAAGCAGCTTCGGATGATAAGAAACC
GGGAGTCGGCTGCCTTGTCACGCAAACGGAAGCGGGACCAAGTGGAGGCA
TTGGAGCTGGAGGTGGAGGCCCTTAAAGATAAAAACCGACAATTAAAGCA
ACGGCTGGCGCGGTATGAGGGCGTGGACACCTTGGAGTCGGCCAGGGACG
CGGGCGGGGACATTGTCCGAGGAACGGGGGCCACGCCCGCCGGCTTGACT
TGGCAACAACAGCAAGAGCAGCGGATAATGGAGGCGCAGCAACAAGCAGG
CGCGGCGGACTCGCAGGATCCAAACCCATTTTTGGAAGAATCTGACCTTG
ACGGGTTCTATCAGCCGCTGGCGGGCATGCTGGGCTTCGACCCCTCCAGT
CTTAATATTTCCCTTCCTTCTTCCCTCCCCCCCTCCTCCGCGCGCCAGTC
ACGGCCAACACCCTCCTCTGGGGCCCCACCCCAGACTGAAGCCGGAAGAA
TCGGAGGTTCGAAGGGGCCTGGAGACCAGTCTGGGGGTCGAAAGGGCCCT
TTCACGGCGGAATCCCCGACACCCACCTACGCGCGTCTCAGCGCGTCGGA
AATAGGCTTTGCACAACGGCCGCAGTTATCCATGGTGTCCTCTCCCGCTC
AATCGCAGGAGCCAGAGCAACGTCTGCGGGGACAGCAGCTGCAGCAACAA
CATCAATTGGCCTTGGAACAACAGCGACAACAGCAGCAGCAAGTACAAAA
AACATCGATCTGGGAGCCCGCGGCTCTGATGCCATTGATGGATTCCACCT
CCGATTTCTACTTCGGCGAAGGGGTGGAGGGGGTGAAATTCGGGTCGGAA
CAGGGCGTCCAAGGCGCATCCGCACCGGGGTTGGTCTCGAAAGAGCAAAA
CAAGGATCCGGTGGAAGAGGAAGCGGAGTATTCACGGCTTCCTGAGCAGG
GGATGGATGCCTCTGACCCCGGCTTTGCCCGGGGGCGGGGACAACGGAAG
AGCCCCCCCGACCAGATCGCCACGGGCCCCGCCTCCACTTCTTCTTTGGA
AGGGGACCGACGTCCTCCAGGCAACCTTGATCAATTATTTGGGAACATTC
TTGTCGATTATGTGAATGGTGGGTGTTGGTTGATGACGGTAATCGTGATT
TAATTCCCTTAGGAGAGAGATGCCTGGCAGGACGGCCGATTCGTGTGGTG
CGCTAAAATCTAACTTTTCCCCAAATGACACCCCAGTCATTGTGAGGGGG
AGATAAAGGAAAGACTGTAACGCCTTCTTTGCACACAAGGAGGTCGGTGC
AACTTGTCGGGAGGCATAAAAGGTGCAGCACTTAAAGCTGGGTTACACGG
GAATGGAGACAGCGACTGAAGTGACGCGTCCTTCATCCTGCAGTGAAAGC
AGGCGAGTTGGTTCCTTGAATCATACCGATGAGGATGCCGTTAGCGAAAC
ACTTTTAACAATTTTTACAATGAAAATTTTGTGGCCGCTAACCTGCACTT
TGTCAGTAAAAGTGCCATGAAAAGGAAAACATCCATGGTTTACAGA back to topprotein sequence of rna4960 >rna4960-protein ID=rna4960-protein|Name=rna4960|organism=Nannochloropsis gaditana|type=polypeptide|length=756bp
MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCD
IAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAG
GIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNV
TASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPY
QIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALT
KKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEG
VDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDP
NPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSG
APPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRP
QLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPA
ALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEE
AEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRPRQ
CTSKTDRKRGRATATAGRDGNADGGARQASRTRPGSSEVEHLDSEVWEFP
EYAPVETGGSLSLGRGGEGGRGEGGSLISMRLGMVRPGAGGAAYPQELPL
ERDGTEAGALERGPEEGAGVRRRGENLRVWEREGGGREEGAEGASLGPSW
STQSPW back to topmRNA from alignment at CM002464.1:768689..772463- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna4960 ID=rna4960|Name=rna4960|organism=Nannochloropsis gaditana|type=mRNA|length=3775bp|location=Sequence derived from alignment at CM002464.1:768689..772463- (Nannochloropsis gaditana)
GGCTAATTTGTTGAGAATGTAAAATCATTCGAGTAACGCCCCCCCCGTTG
CCGCCTATCCGAGGAATGCTACAAGTTGGTGTTTCCGTGTCAAACTCCTC
CATTGGTCACCGACGCGAATACGCAAGCCTACTGTCACCGCTTTTTCATC
ATCATACATGCGATATTGATTTCCGGGTGTTTTTAGACTCTTGTTGACGG
ACAGACTACGTGTGTTCACCCAAGTTCAAACACCCCCCCCCCTCTCCCCT
TCAGAGTACGCACCTCGCGAAATTTGGCCGACGGGCTTCTCCTTGTTCAC
GCCTTTGGACGCTTGACCCCTGCAGCGAGCAAACAAGCCCACGGTGTTGC
ACACGATCATATCATAATTACTCGAAGGCTCGCTGTCTTCTCGGTTGTTG
GAACCCGGTCGTGGTAAATGCTGGTAAAGCTGGAGCTTTTCCCTGCATTT
GTTGTCTCCTTTCTGCCAGGCACCTGAGGCAACAAGTGTACCACAGCGCG
TGCATTCACCCCTACAGCTGGCATGACAACAGATGGTGCTCTGGATGAGC
AGTCCTATCTCATGGCCATGAAGGAGGAGATTGAGTCAGCTCTGGATGCG
GCACCAGGAGGCAACAACGATATCAACACTCCCGGTGACAAGCTGTCCCC
ACCAGCCCTGCAAGACTGTGATATCGCTATCTCCAAAACCAAGCCTCAAA
CCGCTGCCGTGGGTATAGATTTGCTGATGCGTAACAGTGCCCAGGACATC
CACCCAGACCCGGTCTCGAACAGCAAAGGTTTTGAGGACAGGATATCGGG
GAGGACGGATGATTGCGCGGGAGGCATCCATTCGAACACCTCCTCGTCGT
CTTCAGCGCCCCCTTCGGAGGCCTCTACCTCGGTGTCTGCATGGGTAGGC
CAAGAGGACTCGACTGGAAGCAGCACAAGTAGCAGCCGGCAAGGTGGGGA
GGATCACGGGTCAAGTAATGTGACAGCTTCGACCACGTCTATCGGCGCAA
GTACTACGTCTTCGCAGGCCGCTGAACGCCGACGCGCCCGGGCCCGGAAA
ATGGGCCTCTTACAAAACCGGGGAGAGATGCTCCTGTCGTCCTCCCAACG
ACACCTCCAGGAACACCCGTACCAGATTAAAGAGGACGATGGGGACAGGG
AGGGGCTGGCGGGCCTCGCGTGCGACAGCCCACCAGGGAGCTGCTCCAGC
TCCGTGACGGGAATGGTCACCTCACGAATGAGACGCGACGCGGAAGACAT
GGCCGCAGCCGTGGCTCTGACCAAGAAGCAGCTTCGGATGATAAGAAACC
GGGAGTCGGCTGCCTTGTCACGCAAACGGAAGCGGGACCAAGTGGAGGCA
TTGGAGCTGGAGGTGGAGGCCCTTAAAGATAAAAACCGACAATTAAAGCA
ACGGCTGGCGCGGTATGAGGGCGTGGACACCTTGGAGTCGGCCAGGGACG
CGGGCGGGGACATTGTCCGAGGAACGGGGGCCACGCCCGCCGGCTTGACT
TGGCAACAACAGCAAGAGCAGCGGATAATGGAGGCGCAGCAACAAGCAGG
CGCGGCGGACTCGCAGGATCCAAACCCATTTTTGGAAGAATCTGACCTTG
ACGGGTTCTATCAGCCGCTGGCGGGCATGCTGGGCTTCGACCCCTCCAGT
CTTAATATTTCCCTTCCTTCTTCCCTCCCCCCCTCCTCCGCGCGCCAGTC
ACGGCCAACACCCTCCTCTGGGGCCCCACCCCAGACTGAAGCCGGAAGAA
TCGGAGGTTCGAAGGGGCCTGGAGACCAGTCTGGGGGTCGAAAGGGCCCT
TTCACGGCGGAATCCCCGACACCCACCTACGCGCGTCTCAGCGCGTCGGA
AATAGGCTTTGCACAACGGCCGCAGTTATCCATGGTGTCCTCTCCCGCTC
AATCGCAGGAGCCAGAGCAACGTCTGCGGGGACAGCAGCTGCAGCAACAA
CATCAATTGGCCTTGGAACAACAGCGACAACAGCAGCAGCAAGTACAAAA
AACATCGATCTGGGAGCCCGCGGCTCTGATGCCATTGATGGATTCCACCT
CCGATTTCTACTTCGGCGAAGGGGTGGAGGGGGTGAAATTCGGGTCGGAA
CAGGGCGTCCAAGGCGCATCCGCACCGGGGTTGGTCTCGAAAGAGCAAAA
CAAGGATCCGGTGGAAGAGGAAGCGGAGTATTCACGGCTTCCTGAGCAGG
GGATGGATGCCTCTGACCCCGGCTTTGCCCGGGGGCGGGGACAACGGAAG
AGCCCCCCCGACCAGATCGCCACGGGCCCCGCCTCCACTTCTTCTTTGGA
AGGGGACCGACGTCCTCGTCAGTGCACGTCCAAGACTGATCGAAAGCGGG
GGCGGGCCACAGCAACGGCAGGCAGGGACGGAAATGCGGATGGAGGAGCC
AGGCAAGCTAGCAGGACCCGCCCTGGAAGCAGCGAGGTAGAGCATTTGGA
CAGCGAAGTGTGGGAGTTCCCGGAGTACGCCCCGGTGGAGACTGGGGGCA
GCTTGAGCCTGGGGCGAGGGGGGGAAGGAGGGAGAGGGGAAGGGGGATCC
TTGATCTCCATGCGGCTGGGCATGGTGAGGCCAGGGGCGGGGGGCGCTGC
GTACCCCCAAGAACTCCCGTTGGAGAGGGACGGTACAGAGGCAGGGGCAC
TGGAAAGAGGCCCCGAGGAAGGGGCCGGTGTAAGGCGGAGGGGGGAGAAT
CTGCGGGTGTGGGAAAGGGAAGGTGGAGGGAGGGAGGAGGGAGCAGAGGG
GGCCTCCCTGGGCCCGTCCTGGTCGACCCAATCCCCATGGTAATAGGCAC
CCGTCAAAGTAGCAGAGAGGAAGGGGGAATACATGGCTTGGTAGGCTGGT
TCGCTGCGAACGAGGGGTGTTTAGGACTGCCGAAATAGCAGTGAACGAGC
CCGAAGGCTGTAGAAGGCAGCTGGGTCGTGCATACGCGTTCATGGAAGCG
AATGTGTACCTCTATTAAGTTCTAACGCGTGCATAGGGATTGTGCCTGTT
GTAGGGAAAAAAAGCTTGCGTGGGAAGATTGTGAATAATACGTGAGGTTT
TTGTTCTCGGTGTGAGAGTCCAGTCGTCCCAGAGTGTAGAAATTTCATGC
GTGTCATCGTGGCCGATAGCTATGGCCCCGAAAGGATTGAAATCTTGATT
GTACAGAGAGTCTTCAAGCCGGGTGCACGGCCACAGCGGCAAGTATCGTC
ATCCTTCGAGTCCATGGGATCGACAAAGAAACGTGGCCCCATACCTGCCT
ACGCAGGATTCGACCTGGTCTATTTGTGAGGCGTCCAGAGCTGGAGCAGG
CAACCTTGATCAATTATTTGGGAACATTCTTGTCGATTATGTGAATGGTG
GGTGTTGGTTGATGACGGTAATCGTGATTTAATTCCCTTAGGAGAGAGAT
GCCTGGCAGGACGGCCGATTCGTGTGGTGCGCTAAAATCTAACTTTTCCC
CAAATGACACCCCAGTCATTGTGAGGGGGAGATAAAGGAAAGACTGTAAC
GCCTTCTTTGCACACAAGGAGGTCGGTGCAACTTGTCGGGAGGCATAAAA
GGTGCAGCACTTAAAGCTGGGTTACACGGGAATGGAGACAGCGACTGAAG
TGACGCGTCCTTCATCCTGCAGTGAAAGCAGGCGAGTTGGTTCCTTGAAT
CATACCGATGAGGATGCCGTTAGCGAAACACTTTTAACAATTTTTACAAT
GAAAATTTTGTGGCCGCTAACCTGCACTTTGTCAGTAAAAGTGCCATGAA
AAGGAAAACATCCATGGTTTACAGA back to topCoding sequence (CDS) from alignment at CM002464.1:768689..772463- >rna4960 ID=rna4960|Name=rna4960|organism=Nannochloropsis gaditana|type=CDS|length=2271bp|location=Sequence derived from alignment at CM002464.1:768689..772463- (Nannochloropsis gaditana)
ATGACAACAGATGGTGCTCTGGATGAGCAGTCCTATCTCATGGCCATGAA
GGAGGAGATTGAGTCAGCTCTGGATGCGGCACCAGGAGGCAACAACGATA
TCAACACTCCCGGTGACAAGCTGTCCCCACCAGCCCTGCAAGACTGTGAT
ATCGCTATCTCCAAAACCAAGCCTCAAACCGCTGCCGTGGGTATAGATTT
GCTGATGCGTAACAGTGCCCAGGACATCCACCCAGACCCGGTCTCGAACA
GCAAAGGTTTTGAGGACAGGATATCGGGGAGGACGGATGATTGCGCGGGA
GGCATCCATTCGAACACCTCCTCGTCGTCTTCAGCGCCCCCTTCGGAGGC
CTCTACCTCGGTGTCTGCATGGGTAGGCCAAGAGGACTCGACTGGAAGCA
GCACAAGTAGCAGCCGGCAAGGTGGGGAGGATCACGGGTCAAGTAATGTG
ACAGCTTCGACCACGTCTATCGGCGCAAGTACTACGTCTTCGCAGGCCGC
TGAACGCCGACGCGCCCGGGCCCGGAAAATGGGCCTCTTACAAAACCGGG
GAGAGATGCTCCTGTCGTCCTCCCAACGACACCTCCAGGAACACCCGTAC
CAGATTAAAGAGGACGATGGGGACAGGGAGGGGCTGGCGGGCCTCGCGTG
CGACAGCCCACCAGGGAGCTGCTCCAGCTCCGTGACGGGAATGGTCACCT
CACGAATGAGACGCGACGCGGAAGACATGGCCGCAGCCGTGGCTCTGACC
AAGAAGCAGCTTCGGATGATAAGAAACCGGGAGTCGGCTGCCTTGTCACG
CAAACGGAAGCGGGACCAAGTGGAGGCATTGGAGCTGGAGGTGGAGGCCC
TTAAAGATAAAAACCGACAATTAAAGCAACGGCTGGCGCGGTATGAGGGC
GTGGACACCTTGGAGTCGGCCAGGGACGCGGGCGGGGACATTGTCCGAGG
AACGGGGGCCACGCCCGCCGGCTTGACTTGGCAACAACAGCAAGAGCAGC
GGATAATGGAGGCGCAGCAACAAGCAGGCGCGGCGGACTCGCAGGATCCA
AACCCATTTTTGGAAGAATCTGACCTTGACGGGTTCTATCAGCCGCTGGC
GGGCATGCTGGGCTTCGACCCCTCCAGTCTTAATATTTCCCTTCCTTCTT
CCCTCCCCCCCTCCTCCGCGCGCCAGTCACGGCCAACACCCTCCTCTGGG
GCCCCACCCCAGACTGAAGCCGGAAGAATCGGAGGTTCGAAGGGGCCTGG
AGACCAGTCTGGGGGTCGAAAGGGCCCTTTCACGGCGGAATCCCCGACAC
CCACCTACGCGCGTCTCAGCGCGTCGGAAATAGGCTTTGCACAACGGCCG
CAGTTATCCATGGTGTCCTCTCCCGCTCAATCGCAGGAGCCAGAGCAACG
TCTGCGGGGACAGCAGCTGCAGCAACAACATCAATTGGCCTTGGAACAAC
AGCGACAACAGCAGCAGCAAGTACAAAAAACATCGATCTGGGAGCCCGCG
GCTCTGATGCCATTGATGGATTCCACCTCCGATTTCTACTTCGGCGAAGG
GGTGGAGGGGGTGAAATTCGGGTCGGAACAGGGCGTCCAAGGCGCATCCG
CACCGGGGTTGGTCTCGAAAGAGCAAAACAAGGATCCGGTGGAAGAGGAA
GCGGAGTATTCACGGCTTCCTGAGCAGGGGATGGATGCCTCTGACCCCGG
CTTTGCCCGGGGGCGGGGACAACGGAAGAGCCCCCCCGACCAGATCGCCA
CGGGCCCCGCCTCCACTTCTTCTTTGGAAGGGGACCGACGTCCTCGTCAG
TGCACGTCCAAGACTGATCGAAAGCGGGGGCGGGCCACAGCAACGGCAGG
CAGGGACGGAAATGCGGATGGAGGAGCCAGGCAAGCTAGCAGGACCCGCC
CTGGAAGCAGCGAGGTAGAGCATTTGGACAGCGAAGTGTGGGAGTTCCCG
GAGTACGCCCCGGTGGAGACTGGGGGCAGCTTGAGCCTGGGGCGAGGGGG
GGAAGGAGGGAGAGGGGAAGGGGGATCCTTGATCTCCATGCGGCTGGGCA
TGGTGAGGCCAGGGGCGGGGGGCGCTGCGTACCCCCAAGAACTCCCGTTG
GAGAGGGACGGTACAGAGGCAGGGGCACTGGAAAGAGGCCCCGAGGAAGG
GGCCGGTGTAAGGCGGAGGGGGGAGAATCTGCGGGTGTGGGAAAGGGAAG
GTGGAGGGAGGGAGGAGGGAGCAGAGGGGGCCTCCCTGGGCCCGTCCTGG
TCGACCCAATCCCCATGGTAA back to top
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