EWM25726.1, cds4948 (CDS) Nannochloropsis gaditana

Overview
NameEWM25726.1
Unique Namecds4948
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:769671..771941 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25726.1
Productactivating transcription factor 6
Orig transcript idgnl|cribi|Naga_100087g2.1106.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:769671..771941 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Homology
BLAST of EWM25726.1 vs. NCBI_GenBank
Match: gi|585107588|gb|EWM25726.1| (activating transcription factor 6 [Nannochloropsis gaditana])

HSP 1 Score: 1515.36 bits (3922), Expect = 0.000e+0
Identity = 756/756 (100.00%), Postives = 756/756 (100.00%), Query Frame = 0
Query:    1 MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRPRQCTSKTDRKRGRATATAGRDGNADGGARQASRTRPGSSEVEHLDSEVWEFPEYAPVETGGSLSLGRGGEGGRGEGGSLISMRLGMVRPGAGGAAYPQELPLERDGTEAGALERGPEEGAGVRRRGENLRVWEREGGGREEGAEGASLGPSWSTQSPW 756
            MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRPRQCTSKTDRKRGRATATAGRDGNADGGARQASRTRPGSSEVEHLDSEVWEFPEYAPVETGGSLSLGRGGEGGRGEGGSLISMRLGMVRPGAGGAAYPQELPLERDGTEAGALERGPEEGAGVRRRGENLRVWEREGGGREEGAEGASLGPSWSTQSPW
Sbjct:    1 MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRPRQCTSKTDRKRGRATATAGRDGNADGGARQASRTRPGSSEVEHLDSEVWEFPEYAPVETGGSLSLGRGGEGGRGEGGSLISMRLGMVRPGAGGAAYPQELPLERDGTEAGALERGPEEGAGVRRRGENLRVWEREGGGREEGAEGASLGPSWSTQSPW 756          
BLAST of EWM25726.1 vs. NCBI_GenBank
Match: gi|553180928|ref|XP_005853482.1| (activating transcription factor 6 [Nannochloropsis gaditana CCMP526] >gi|422295577|gb|EKU22876.1| activating transcription factor 6 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1503.42 bits (3891), Expect = 0.000e+0
Identity = 752/756 (99.47%), Postives = 753/756 (99.60%), Query Frame = 0
Query:    1 MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRPRQCTSKTDRKRGRATATAGRDGNADGGARQASRTRPGSSEVEHLDSEVWEFPEYAPVETGGSLSLGRGGEGGRGEGGSLISMRLGMVRPGAGGAAYPQELPLERDGTEAGALERGPEEGAGVRRRGENLRVWEREGGGREEGAEGASLGPSWSTQSPW 756
            MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSN SSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPP SARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGP TAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRPRQCTSKTDRKRGRATATAGRDGNADGGARQASRTRPGSSEVEHLDSEVWEFPEYAPVETGGSLSLGRGGEGGRGEGGSLISMRLGMVRPGAGGAAYPQELPLE+DGTEAGALERGPEEGAGVRRRGENLRVWEREGGGREEGAEGASLGPSWSTQSPW
Sbjct:    1 MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNASSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPP-SARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPVTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRPRQCTSKTDRKRGRATATAGRDGNADGGARQASRTRPGSSEVEHLDSEVWEFPEYAPVETGGSLSLGRGGEGGRGEGGSLISMRLGMVRPGAGGAAYPQELPLEKDGTEAGALERGPEEGAGVRRRGENLRVWEREGGGREEGAEGASLGPSWSTQSPW 755          
BLAST of EWM25726.1 vs. NCBI_GenBank
Match: gi|585107587|gb|EWM25725.1| (activating transcription factor 6 [Nannochloropsis gaditana])

HSP 1 Score: 1199.11 bits (3101), Expect = 0.000e+0
Identity = 598/598 (100.00%), Postives = 598/598 (100.00%), Query Frame = 0
Query:    1 MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRP 598
            MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRP
Sbjct:    1 MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRP 598          
BLAST of EWM25726.1 vs. NCBI_GenBank
Match: gi|298711530|emb|CBJ26618.1| (similar to activating transcription factor 6 [Ectocarpus siliculosus])

HSP 1 Score: 70.8626 bits (172), Expect = 2.884e-9
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 0
Query:  251 KKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATP 322
            KKQ RMIRNRESAALSRKRKRD++E+LE +V  L ++NR L+ RLA+YE      S + A     R T  TP
Sbjct:  156 KKQQRMIRNRESAALSRKRKRDKIESLEEQVARLAEENRGLRHRLAKYEA-----SPQQARYKYARQTATTP 222          
BLAST of EWM25726.1 vs. NCBI_GenBank
Match: gi|299470860|emb|CBN78809.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.781 bits (164), Expect = 6.628e-9
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 0
Query:  250 TKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAG 311
             +KQ RM+RNRESAALSRKRK D++  LE++VEAL+++NR+L+QR+ R E     +  RDAG
Sbjct:   63 VRKQQRMLRNRESAALSRKRKSDRIGELEIQVEALQEENRRLRQRIDRKE-----DDGRDAG 119          
BLAST of EWM25726.1 vs. NCBI_GenBank
Match: gi|585106108|gb|EWM24592.1| (Basic-leucine zipper domain protein [Nannochloropsis gaditana])

HSP 1 Score: 63.929 bits (154), Expect = 5.215e-7
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 0
Query:  249 LTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYE 299
            +TKK+LRM++NRESAA SRKRKRD +E LE EV  L+ +NR LK +L  Y+
Sbjct:  296 MTKKELRMLKNRESAARSRKRKRDIMERLEEEVRTLRVQNRVLKAKLDVYQ 346          
The following BLAST results are available for this feature:
BLAST of EWM25726.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585107588|gb|EWM25726.1|0.000e+0100.00activating transcription factor 6 [Nannochloropsis... [more]
gi|553180928|ref|XP_005853482.1|0.000e+099.47activating transcription factor 6 [Nannochloropsis... [more]
gi|585107587|gb|EWM25725.1|0.000e+0100.00activating transcription factor 6 [Nannochloropsis... [more]
gi|298711530|emb|CBJ26618.1|2.884e-955.56similar to activating transcription factor 6 [Ecto... [more]
gi|299470860|emb|CBN78809.1|6.628e-956.45conserved unknown protein [Ectocarpus siliculosus][more]
gi|585106108|gb|EWM24592.1|5.215e-760.78Basic-leucine zipper domain protein [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4960rna4960Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications