|
|
Properties
| Property Name | Value |
|---|
| Product | activating transcription factor 6 |
| Orig transcript id | gnl|cribi|Naga_100087g2.1105.mrna |
| Orig protein id | gnl|cribi|Naga_100087g2.1105 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:768689..772463 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4959 ID=rna4959|Name=rna4959|organism=Nannochloropsis gaditana|type=mRNA|length=1234bp
ACCAAACTGCGTCGACGCTCGGAGAGTCAATGACCTGTCACACTTGCGGG
TGTGAGGGGCTACCCGTTCTTCGTGTCCCACCTCTTGCAGCCTCCCCACC
CACCCACCACATACTACAGCATTTTACAAGCGTTAGCGCTCAAGGCTTTC
TTATTTTGCACTGCTCGATCCGTGCTGCTAAGATCATGGCTTCAGACGGA
GAGGAAAGCACGCAGATGGCGCGGGATGAGTCCACGCGACTCCAATGTCG
GTTTTACGAGGAGCAGTATCCCAATCCGGAGAGTATGGTCATGGTGAAAG
TCATTAATATAGCTGACATGGCAGCGGAAGTCATCTTGCTCGAATACAAT
GACATTGAGGGTATGATCCTCCACTCCGAGCTCTCCCGGCGTCGCATTCG
ATCCATCAAGAAGCTCATCCGCGTCAACAAGCTGGAAGTGGTCTCCGTGT
TGCGGGTGGACAAGAAGAAAGGGTACATCGACTTGTCCAAACGTCGCGTT
TCCCCTGACGACGTGATCAAGTGCGAAGAGCGCTACAACAAGGCGAAAGC
CGTCCACTCCGTCCTCCGCCACGTCGCCGACATGCACCACCTCTGGCTCG
AGGACCTGTGCAAGAAGGTGGCCTGGCCTCTCTACCGCAAGCACGGGCAT
GCCTTCGATGCCTTCACCAAGTCCCTCTTGCCCGAGGGCGACGACCGGTA
CGAGGATGTGTTCGCAGGCCTGGACATCTCCCCCGAGGTCAAGCACAGCA
TCGTCACCTACATCAAGCGTCGTCTGGCGCCCAAGCCCATCAAGATCCGG
GCAGACATCGACGTGACCTGTTTCGCCTACGAGGGGATTGAGGCCGTGCG
GGCGGCGTTGCAAGCGGGTTTGGAGACGCCTTGTTCGAGCGAAGTGGAGA
TTAAATTGATCGCCCCGCCCATGTATGTCGTCACCACCAACACCTTGGAA
CAGGACATCGGGATCGAGAACTTGAATCAGGTCATAGAGCGGATCCGTGC
GCGGATCGTGGCAAGCGAGGGTAGACTGGAAATTAAAATGGAGCCTAAGG
TGGTGAGTCAGCGTGATGAGGCGGATCTTCAAGCAATGATCAAGAGGATT
GAGGAGGAGAACGAGGAAGTTGACGGAGATGCCCCTGAGGACGCATGAGA
TGTCTTGGAGGGTCAAGAGTATAGGCAAGCCCTGACTGACAAGAACATAA
AAGAAAAAGCAACCAAGGAACGTTACTTTGCGGC back to topprotein sequence of rna4959 >rna4959-protein ID=rna4959-protein|Name=rna4959|organism=Nannochloropsis gaditana|type=polypeptide|length=626bp
MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCD
IAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAG
GIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNV
TASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPY
QIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALT
KKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEG
VDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDP
NPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSG
APPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRP
QLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPA
ALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEE
AEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRPPG
NLDQLFGNILVDYVNGGCWLMTVIVI back to topmRNA from alignment at CM002464.1:768689..772463- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4959 ID=rna4959|Name=rna4959|organism=Nannochloropsis gaditana|type=mRNA|length=3775bp|location=Sequence derived from alignment at CM002464.1:768689..772463- (Nannochloropsis gaditana)
GGCTAATTTGTTGAGAATGTAAAATCATTCGAGTAACGCCCCCCCCGTTG
CCGCCTATCCGAGGAATGCTACAAGTTGGTGTTTCCGTGTCAAACTCCTC
CATTGGTCACCGACGCGAATACGCAAGCCTACTGTCACCGCTTTTTCATC
ATCATACATGCGATATTGATTTCCGGGTGTTTTTAGACTCTTGTTGACGG
ACAGACTACGTGTGTTCACCCAAGTTCAAACACCCCCCCCCCTCTCCCCT
TCAGAGTACGCACCTCGCGAAATTTGGCCGACGGGCTTCTCCTTGTTCAC
GCCTTTGGACGCTTGACCCCTGCAGCGAGCAAACAAGCCCACGGTGTTGC
ACACGATCATATCATAATTACTCGAAGGCTCGCTGTCTTCTCGGTTGTTG
GAACCCGGTCGTGGTAAATGCTGGTAAAGCTGGAGCTTTTCCCTGCATTT
GTTGTCTCCTTTCTGCCAGGCACCTGAGGCAACAAGTGTACCACAGCGCG
TGCATTCACCCCTACAGCTGGCATGACAACAGATGGTGCTCTGGATGAGC
AGTCCTATCTCATGGCCATGAAGGAGGAGATTGAGTCAGCTCTGGATGCG
GCACCAGGAGGCAACAACGATATCAACACTCCCGGTGACAAGCTGTCCCC
ACCAGCCCTGCAAGACTGTGATATCGCTATCTCCAAAACCAAGCCTCAAA
CCGCTGCCGTGGGTATAGATTTGCTGATGCGTAACAGTGCCCAGGACATC
CACCCAGACCCGGTCTCGAACAGCAAAGGTTTTGAGGACAGGATATCGGG
GAGGACGGATGATTGCGCGGGAGGCATCCATTCGAACACCTCCTCGTCGT
CTTCAGCGCCCCCTTCGGAGGCCTCTACCTCGGTGTCTGCATGGGTAGGC
CAAGAGGACTCGACTGGAAGCAGCACAAGTAGCAGCCGGCAAGGTGGGGA
GGATCACGGGTCAAGTAATGTGACAGCTTCGACCACGTCTATCGGCGCAA
GTACTACGTCTTCGCAGGCCGCTGAACGCCGACGCGCCCGGGCCCGGAAA
ATGGGCCTCTTACAAAACCGGGGAGAGATGCTCCTGTCGTCCTCCCAACG
ACACCTCCAGGAACACCCGTACCAGATTAAAGAGGACGATGGGGACAGGG
AGGGGCTGGCGGGCCTCGCGTGCGACAGCCCACCAGGGAGCTGCTCCAGC
TCCGTGACGGGAATGGTCACCTCACGAATGAGACGCGACGCGGAAGACAT
GGCCGCAGCCGTGGCTCTGACCAAGAAGCAGCTTCGGATGATAAGAAACC
GGGAGTCGGCTGCCTTGTCACGCAAACGGAAGCGGGACCAAGTGGAGGCA
TTGGAGCTGGAGGTGGAGGCCCTTAAAGATAAAAACCGACAATTAAAGCA
ACGGCTGGCGCGGTATGAGGGCGTGGACACCTTGGAGTCGGCCAGGGACG
CGGGCGGGGACATTGTCCGAGGAACGGGGGCCACGCCCGCCGGCTTGACT
TGGCAACAACAGCAAGAGCAGCGGATAATGGAGGCGCAGCAACAAGCAGG
CGCGGCGGACTCGCAGGATCCAAACCCATTTTTGGAAGAATCTGACCTTG
ACGGGTTCTATCAGCCGCTGGCGGGCATGCTGGGCTTCGACCCCTCCAGT
CTTAATATTTCCCTTCCTTCTTCCCTCCCCCCCTCCTCCGCGCGCCAGTC
ACGGCCAACACCCTCCTCTGGGGCCCCACCCCAGACTGAAGCCGGAAGAA
TCGGAGGTTCGAAGGGGCCTGGAGACCAGTCTGGGGGTCGAAAGGGCCCT
TTCACGGCGGAATCCCCGACACCCACCTACGCGCGTCTCAGCGCGTCGGA
AATAGGCTTTGCACAACGGCCGCAGTTATCCATGGTGTCCTCTCCCGCTC
AATCGCAGGAGCCAGAGCAACGTCTGCGGGGACAGCAGCTGCAGCAACAA
CATCAATTGGCCTTGGAACAACAGCGACAACAGCAGCAGCAAGTACAAAA
AACATCGATCTGGGAGCCCGCGGCTCTGATGCCATTGATGGATTCCACCT
CCGATTTCTACTTCGGCGAAGGGGTGGAGGGGGTGAAATTCGGGTCGGAA
CAGGGCGTCCAAGGCGCATCCGCACCGGGGTTGGTCTCGAAAGAGCAAAA
CAAGGATCCGGTGGAAGAGGAAGCGGAGTATTCACGGCTTCCTGAGCAGG
GGATGGATGCCTCTGACCCCGGCTTTGCCCGGGGGCGGGGACAACGGAAG
AGCCCCCCCGACCAGATCGCCACGGGCCCCGCCTCCACTTCTTCTTTGGA
AGGGGACCGACGTCCTCGTCAGTGCACGTCCAAGACTGATCGAAAGCGGG
GGCGGGCCACAGCAACGGCAGGCAGGGACGGAAATGCGGATGGAGGAGCC
AGGCAAGCTAGCAGGACCCGCCCTGGAAGCAGCGAGGTAGAGCATTTGGA
CAGCGAAGTGTGGGAGTTCCCGGAGTACGCCCCGGTGGAGACTGGGGGCA
GCTTGAGCCTGGGGCGAGGGGGGGAAGGAGGGAGAGGGGAAGGGGGATCC
TTGATCTCCATGCGGCTGGGCATGGTGAGGCCAGGGGCGGGGGGCGCTGC
GTACCCCCAAGAACTCCCGTTGGAGAGGGACGGTACAGAGGCAGGGGCAC
TGGAAAGAGGCCCCGAGGAAGGGGCCGGTGTAAGGCGGAGGGGGGAGAAT
CTGCGGGTGTGGGAAAGGGAAGGTGGAGGGAGGGAGGAGGGAGCAGAGGG
GGCCTCCCTGGGCCCGTCCTGGTCGACCCAATCCCCATGGTAATAGGCAC
CCGTCAAAGTAGCAGAGAGGAAGGGGGAATACATGGCTTGGTAGGCTGGT
TCGCTGCGAACGAGGGGTGTTTAGGACTGCCGAAATAGCAGTGAACGAGC
CCGAAGGCTGTAGAAGGCAGCTGGGTCGTGCATACGCGTTCATGGAAGCG
AATGTGTACCTCTATTAAGTTCTAACGCGTGCATAGGGATTGTGCCTGTT
GTAGGGAAAAAAAGCTTGCGTGGGAAGATTGTGAATAATACGTGAGGTTT
TTGTTCTCGGTGTGAGAGTCCAGTCGTCCCAGAGTGTAGAAATTTCATGC
GTGTCATCGTGGCCGATAGCTATGGCCCCGAAAGGATTGAAATCTTGATT
GTACAGAGAGTCTTCAAGCCGGGTGCACGGCCACAGCGGCAAGTATCGTC
ATCCTTCGAGTCCATGGGATCGACAAAGAAACGTGGCCCCATACCTGCCT
ACGCAGGATTCGACCTGGTCTATTTGTGAGGCGTCCAGAGCTGGAGCAGG
CAACCTTGATCAATTATTTGGGAACATTCTTGTCGATTATGTGAATGGTG
GGTGTTGGTTGATGACGGTAATCGTGATTTAATTCCCTTAGGAGAGAGAT
GCCTGGCAGGACGGCCGATTCGTGTGGTGCGCTAAAATCTAACTTTTCCC
CAAATGACACCCCAGTCATTGTGAGGGGGAGATAAAGGAAAGACTGTAAC
GCCTTCTTTGCACACAAGGAGGTCGGTGCAACTTGTCGGGAGGCATAAAA
GGTGCAGCACTTAAAGCTGGGTTACACGGGAATGGAGACAGCGACTGAAG
TGACGCGTCCTTCATCCTGCAGTGAAAGCAGGCGAGTTGGTTCCTTGAAT
CATACCGATGAGGATGCCGTTAGCGAAACACTTTTAACAATTTTTACAAT
GAAAATTTTGTGGCCGCTAACCTGCACTTTGTCAGTAAAAGTGCCATGAA
AAGGAAAACATCCATGGTTTACAGA back to topCoding sequence (CDS) from alignment at CM002464.1:768689..772463- >rna4959 ID=rna4959|Name=rna4959|organism=Nannochloropsis gaditana|type=CDS|length=3762bp|location=Sequence derived from alignment at CM002464.1:768689..772463- (Nannochloropsis gaditana)
CAGGCAACCTTGATCAATTATTTGGGAACATTCTTGTCGATTATGTGAAT
GGTGGGTGTTGGTTGATGACGGTAATCGTGATTTAAATGACAACAGATGG
TGCTCTGGATGAGCAGTCCTATCTCATGGCCATGAAGGAGGAGATTGAGT
CAGCTCTGGATGCGGCACCAGGAGGCAACAACGATATCAACACTCCCGGT
GACAAGCTGTCCCCACCAGCCCTGCAAGACTGTGATATCGCTATCTCCAA
AACCAAGCCTCAAACCGCTGCCGTGGGTATAGATTTGCTGATGCGTAACA
GTGCCCAGGACATCCACCCAGACCCGGTCTCGAACAGCAAAGGTTTTGAG
GACAGGATATCGGGGAGGACGGATGATTGCGCGGGAGGCATCCATTCGAA
CACCTCCTCGTCGTCTTCAGCGCCCCCTTCGGAGGCCTCTACCTCGGTGT
CTGCATGGGTAGGCCAAGAGGACTCGACTGGAAGCAGCACAAGTAGCAGC
CGGCAAGGTGGGGAGGATCACGGGTCAAGTAATGTGACAGCTTCGACCAC
GTCTATCGGCGCAAGTACTACGTCTTCGCAGGCCGCTGAACGCCGACGCG
CCCGGGCCCGGAAAATGGGCCTCTTACAAAACCGGGGAGAGATGCTCCTG
TCGTCCTCCCAACGACACCTCCAGGAACACCCGTACCAGATTAAAGAGGA
CGATGGGGACAGGGAGGGGCTGGCGGGCCTCGCGTGCGACAGCCCACCAG
GGAGCTGCTCCAGCTCCGTGACGGGAATGGTCACCTCACGAATGAGACGC
GACGCGGAAGACATGGCCGCAGCCGTGGCTCTGACCAAGAAGCAGCTTCG
GATGATAAGAAACCGGGAGTCGGCTGCCTTGTCACGCAAACGGAAGCGGG
ACCAAGTGGAGGCATTGGAGCTGGAGGTGGAGGCCCTTAAAGATAAAAAC
CGACAATTAAAGCAACGGCTGGCGCGGTATGAGGGCGTGGACACCTTGGA
GTCGGCCAGGGACGCGGGCGGGGACATTGTCCGAGGAACGGGGGCCACGC
CCGCCGGCTTGACTTGGCAACAACAGCAAGAGCAGCGGATAATGGAGGCG
CAGCAACAAGCAGGCGCGGCGGACTCGCAGGATCCAAACCCATTTTTGGA
AGAATCTGACCTTGACGGGTTCTATCAGCCGCTGGCGGGCATGCTGGGCT
TCGACCCCTCCAGTCTTAATATTTCCCTTCCTTCTTCCCTCCCCCCCTCC
TCCGCGCGCCAGTCACGGCCAACACCCTCCTCTGGGGCCCCACCCCAGAC
TGAAGCCGGAAGAATCGGAGGTTCGAAGGGGCCTGGAGACCAGTCTGGGG
GTCGAAAGGGCCCTTTCACGGCGGAATCCCCGACACCCACCTACGCGCGT
CTCAGCGCGTCGGAAATAGGCTTTGCACAACGGCCGCAGTTATCCATGGT
GTCCTCTCCCGCTCAATCGCAGGAGCCAGAGCAACGTCTGCGGGGACAGC
AGCTGCAGCAACAACATCAATTGGCCTTGGAACAACAGCGACAACAGCAG
CAGCAAGTACAAAAAACATCGATCTGGGAGCCCGCGGCTCTGATGCCATT
GATGGATTCCACCTCCGATTTCTACTTCGGCGAAGGGGTGGAGGGGGTGA
AATTCGGGTCGGAACAGGGCGTCCAAGGCGCATCCGCACCGGGGTTGGTC
TCGAAAGAGCAAAACAAGGATCCGGTGGAAGAGGAAGCGGAGTATTCACG
GCTTCCTGAGCAGGGGATGGATGCCTCTGACCCCGGCTTTGCCCGGGGGC
GGGGACAACGGAAGAGCCCCCCCGACCAGATCGCCACGGGCCCCGCCTCC
ACTTCTTCTTTGGAAGGGGACCGACGTCCTCCAGGCAACCTTGATCAATT
ATTTGGGAACATTCTTGTCGATTATGTGAATGGTGGGTGTTGGTTGATGA
CGGTAATCGTGATTTAAATGACAACAGATGGTGCTCTGGATGAGCAGTCC
TATCTCATGGCCATGAAGGAGGAGATTGAGTCAGCTCTGGATGCGGCACC
AGGAGGCAACAACGATATCAACACTCCCGGTGACAAGCTGTCCCCACCAG
CCCTGCAAGACTGTGATATCGCTATCTCCAAAACCAAGCCTCAAACCGCT
GCCGTGGGTATAGATTTGCTGATGCGTAACAGTGCCCAGGACATCCACCC
AGACCCGGTCTCGAACAGCAAAGGTTTTGAGGACAGGATATCGGGGAGGA
CGGATGATTGCGCGGGAGGCATCCATTCGAACACCTCCTCGTCGTCTTCA
GCGCCCCCTTCGGAGGCCTCTACCTCGGTGTCTGCATGGGTAGGCCAAGA
GGACTCGACTGGAAGCAGCACAAGTAGCAGCCGGCAAGGTGGGGAGGATC
ACGGGTCAAGTAATGTGACAGCTTCGACCACGTCTATCGGCGCAAGTACT
ACGTCTTCGCAGGCCGCTGAACGCCGACGCGCCCGGGCCCGGAAAATGGG
CCTCTTACAAAACCGGGGAGAGATGCTCCTGTCGTCCTCCCAACGACACC
TCCAGGAACACCCGTACCAGATTAAAGAGGACGATGGGGACAGGGAGGGG
CTGGCGGGCCTCGCGTGCGACAGCCCACCAGGGAGCTGCTCCAGCTCCGT
GACGGGAATGGTCACCTCACGAATGAGACGCGACGCGGAAGACATGGCCG
CAGCCGTGGCTCTGACCAAGAAGCAGCTTCGGATGATAAGAAACCGGGAG
TCGGCTGCCTTGTCACGCAAACGGAAGCGGGACCAAGTGGAGGCATTGGA
GCTGGAGGTGGAGGCCCTTAAAGATAAAAACCGACAATTAAAGCAACGGC
TGGCGCGGTATGAGGGCGTGGACACCTTGGAGTCGGCCAGGGACGCGGGC
GGGGACATTGTCCGAGGAACGGGGGCCACGCCCGCCGGCTTGACTTGGCA
ACAACAGCAAGAGCAGCGGATAATGGAGGCGCAGCAACAAGCAGGCGCGG
CGGACTCGCAGGATCCAAACCCATTTTTGGAAGAATCTGACCTTGACGGG
TTCTATCAGCCGCTGGCGGGCATGCTGGGCTTCGACCCCTCCAGTCTTAA
TATTTCCCTTCCTTCTTCCCTCCCCCCCTCCTCCGCGCGCCAGTCACGGC
CAACACCCTCCTCTGGGGCCCCACCCCAGACTGAAGCCGGAAGAATCGGA
GGTTCGAAGGGGCCTGGAGACCAGTCTGGGGGTCGAAAGGGCCCTTTCAC
GGCGGAATCCCCGACACCCACCTACGCGCGTCTCAGCGCGTCGGAAATAG
GCTTTGCACAACGGCCGCAGTTATCCATGGTGTCCTCTCCCGCTCAATCG
CAGGAGCCAGAGCAACGTCTGCGGGGACAGCAGCTGCAGCAACAACATCA
ATTGGCCTTGGAACAACAGCGACAACAGCAGCAGCAAGTACAAAAAACAT
CGATCTGGGAGCCCGCGGCTCTGATGCCATTGATGGATTCCACCTCCGAT
TTCTACTTCGGCGAAGGGGTGGAGGGGGTGAAATTCGGGTCGGAACAGGG
CGTCCAAGGCGCATCCGCACCGGGGTTGGTCTCGAAAGAGCAAAACAAGG
ATCCGGTGGAAGAGGAAGCGGAGTATTCACGGCTTCCTGAGCAGGGGATG
GATGCCTCTGACCCCGGCTTTGCCCGGGGGCGGGGACAACGGAAGAGCCC
CCCCGACCAGATCGCCACGGGCCCCGCCTCCACTTCTTCTTTGGAAGGGG
ACCGACGTCCTC back to top
|