EWM25725.1, cds4947 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25725.1 vs. NCBI_GenBank
Match: gi|585107587|gb|EWM25725.1| (activating transcription factor 6 [Nannochloropsis gaditana]) HSP 1 Score: 1267.68 bits (3279), Expect = 0.000e+0 Identity = 626/626 (100.00%), Postives = 626/626 (100.00%), Query Frame = 0
Query: 1 MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRPPGNLDQLFGNILVDYVNGGCWLMTVIVI 626
MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRPPGNLDQLFGNILVDYVNGGCWLMTVIVI
Sbjct: 1 MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRPPGNLDQLFGNILVDYVNGGCWLMTVIVI 626
BLAST of EWM25725.1 vs. NCBI_GenBank
Match: gi|585107588|gb|EWM25726.1| (activating transcription factor 6 [Nannochloropsis gaditana]) HSP 1 Score: 1199.11 bits (3101), Expect = 0.000e+0 Identity = 598/598 (100.00%), Postives = 598/598 (100.00%), Query Frame = 0
Query: 1 MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRP 598
MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRP
Sbjct: 1 MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRP 598
BLAST of EWM25725.1 vs. NCBI_GenBank
Match: gi|553180928|ref|XP_005853482.1| (activating transcription factor 6 [Nannochloropsis gaditana CCMP526] >gi|422295577|gb|EKU22876.1| activating transcription factor 6 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1188.33 bits (3073), Expect = 0.000e+0 Identity = 595/598 (99.50%), Postives = 595/598 (99.50%), Query Frame = 0
Query: 1 MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNTSSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPPSSARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPFTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRP 598
MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSN SSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPP SARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGP TAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRP
Sbjct: 1 MTTDGALDEQSYLMAMKEEIESALDAAPGGNNDINTPGDKLSPPALQDCDIAISKTKPQTAAVGIDLLMRNSAQDIHPDPVSNSKGFEDRISGRTDDCAGGIHSNASSSSSAPPSEASTSVSAWVGQEDSTGSSTSSSRQGGEDHGSSNVTASTTSIGASTTSSQAAERRRARARKMGLLQNRGEMLLSSSQRHLQEHPYQIKEDDGDREGLAGLACDSPPGSCSSSVTGMVTSRMRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATPAGLTWQQQQEQRIMEAQQQAGAADSQDPNPFLEESDLDGFYQPLAGMLGFDPSSLNISLPSSLPP-SARQSRPTPSSGAPPQTEAGRIGGSKGPGDQSGGRKGPVTAESPTPTYARLSASEIGFAQRPQLSMVSSPAQSQEPEQRLRGQQLQQQHQLALEQQRQQQQQVQKTSIWEPAALMPLMDSTSDFYFGEGVEGVKFGSEQGVQGASAPGLVSKEQNKDPVEEEAEYSRLPEQGMDASDPGFARGRGQRKSPPDQIATGPASTSSLEGDRRP 597
BLAST of EWM25725.1 vs. NCBI_GenBank
Match: gi|298711530|emb|CBJ26618.1| (similar to activating transcription factor 6 [Ectocarpus siliculosus]) HSP 1 Score: 71.2478 bits (173), Expect = 1.583e-9 Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 0
Query: 251 KKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRGTGATP 322
KKQ RMIRNRESAALSRKRKRD++E+LE +V L ++NR L+ RLA+YE S + A R T TP
Sbjct: 156 KKQQRMIRNRESAALSRKRKRDKIESLEEQVARLAEENRGLRHRLAKYEA-----SPQQARYKYARQTATTP 222
BLAST of EWM25725.1 vs. NCBI_GenBank
Match: gi|299470860|emb|CBN78809.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 68.5514 bits (166), Expect = 3.764e-9 Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 0
Query: 250 TKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAG 311
+KQ RM+RNRESAALSRKRK D++ LE++VEAL+++NR+L+QR+ R E + RDAG
Sbjct: 63 VRKQQRMLRNRESAALSRKRKSDRIGELEIQVEALQEENRRLRQRIDRKE-----DDGRDAG 119
BLAST of EWM25725.1 vs. NCBI_GenBank
Match: gi|585106108|gb|EWM24592.1| (Basic-leucine zipper domain protein [Nannochloropsis gaditana]) HSP 1 Score: 63.5438 bits (153), Expect = 4.611e-7 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 0
Query: 249 LTKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYE 299
+TKK+LRM++NRESAA SRKRKRD +E LE EV L+ +NR LK +L Y+
Sbjct: 296 MTKKELRMLKNRESAARSRKRKRDIMERLEEEVRTLRVQNRVLKAKLDVYQ 346 The following BLAST results are available for this feature:
BLAST of EWM25725.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|