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Properties
| Property Name | Value |
|---|
| Product | ap-2 complex subunit mu |
| Orig transcript id | gnl|cribi|Naga_100168g4.5631.mrna |
| Orig protein id | gnl|cribi|Naga_100168g4.5631 |
| Gene | APM2 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:677506..679632 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4923 ID=rna4923|Name=rna4923|organism=Nannochloropsis gaditana|type=mRNA|length=2139bp
GCCCAGGAGTTTGGCTGGCCTGTCCCCCATGGGCGTGAGCCTTACCTACG
GCATTGCGTACAAATAATAGTTTTGCGTTAGCATCTGGATGCATGAAGGA
AGTAAAGAAAAATCTTTAGTGCCTCGGTGCTGCATTCTTCAATTATTTGT
ACCATTGCCGGTCTTGAAGCAATCGCCAAGAAAGTCGTCCTGTTCTCTGC
CCCCCAGCTGCTACAAACACATTGATCTATCCCATTCTATACGCCGCTCT
GATATACAGGTTGCTAGCTTGGGTTGTAGTTGAGTAAGTAGCCAGGCTTG
CAAGGATTGCGGCATCGGTCACTCAGCGTTCCTCCGATTGCGTCCACCTT
CGCAAGCAGCGTCGTAGACCTGTCGGTCCCCGTAGCCCTCCTCTGCAGAA
AGCAGTATGATCTCTGCAATCTTTCTGGTAAATCAGAAGGGGGAGGTCGT
GGTCAATCGACTGTATCGGGACGATGTTAGCCGGTCAATGGTGGACACGT
TCCGACACAAGGTTATTGCTTCGAAAGAGACGGGCTCCCAGGCCCCAATC
AAGGTCATCGAGAATGCGACCTTCCTGTACATCCGCCACCACCATCTGTA
CCTGGTTGCTGTCACGCGTTCCAACTTAAACCCTGCACTCGTGTTTGAAT
TCCTATTTCGAATGGTCCGCATCTTCAAAGCGTACTTTGGAGAGCATTTT
GACGAGAGCGCGGTTCGAAATCATTTTACGTTGGTTTACGAGCTCCTAGA
TGAGACCATGGATTTCGGCTACCCACAGAACTGCGCCATTGAGGTCCTGC
GGCAATACATTAACCTTGGAACGGTTCAGGCGGAGATGGAGCAGCAAGAG
CCGACGGTGCTGACGTCTCAGATCACGGGCCAGATCGATTGGCGGCGAGA
CGGAATCCGGTATCGGAAGAATGAGGTGTACATCGACGTGCTCGAGTCCG
TGAACATCCTCATGTCCGCCACCGGCAACGTCCTGCATTCCGATGTGACC
GGTCAGATCGTGATGAAGGCCTTGTTGTCGGGTTGGCCGGAGTGCAAGTT
TGGCCTCAACGACAAGCTGATCATGGACAGGGAGGCCGCCGGCAAAGCCA
GTGGCGCCGTGACACGCCGGAGCGCAGGTGTGGAGATCGACGACTGCACA
TTTCACCGCTGTGTCCGCCTGGGGCGCTTTGACGCGGATAGGACCATCAC
CTTCATTCCCCCCGACGGCGAGTTCGAGCTAATGCGCTACCGCGTGACCG
AGAACGTGAACCTTCCCTTTCGGCTGATTCCGGCCATCCAAGAGGAGGGA
CGCAACCGTGTGGCTGTGAATGTCAAGGTCACCGCCAACTTCTCCTCCAA
GTTGTTCGGTCAGAACGTGGTCATCAAGGTCCCTGTCCCCCCCAACACGG
CCAAGACCCATATCAACGTCTCCACGGGCCGGGCGCGCTTTGAGCCCGAG
CACCGAGCTCTGGTCTGGCGGATTAAGCGCTTCCCCGGGGGCTGCGAGTT
CATGATTACCGCCGACGTCACCCTCATGCCCAGCACCAGCAACAAGGCCT
GGTCGCGCCCCCCCATCCAGGTGGAGTTCCAGGTACCCATGTTCACGTCC
TCAGGGGTACACGTCCGCTTCCTGCGCGTCTACGACAAGAGCGGATATCA
AACAAACCGCTGGGTGCGATACATAACCAGAGCTGGTTCATTCTCGGTGC
GTCACGTGGTGTACACGGAAACATTATCATGCACGTGTGCGAGGTCACAT
GTATTCCTTTCGTGAATCAATATATTTTTCTAATGAGGGCTTGAACTTCG
ATGCTTGCGACCAAAGTTTTATCCCGATGTGCGCATGATCATGTTGTGGA
GATTCTGTCGGTGACGTCAGCCTTCTCCTGCATGGCTTTTCCTGATCTCC
GTCGGTGAAGTCGCGCTCAATTTTGGATAACTTACAAATTCTCTATTTTT
CAAATATAGGTACGCATTTAGCGTGAGATATGAAGTTCAAGGCAACTGGG
CCCTGATAGGATGATGAAAATGTTTATTGGGTATTTTTGTAAAGGAAACT
CAACATGGTCGAACAGGAGAAGGTCCTGGGGTTCAATAACACACGTCTCT
CGTCGACTAAAGAACTCATCCGTTAACATCAGGAGGAAC back to topprotein sequence of rna4923 >rna4923-protein ID=rna4923-protein|Name=rna4923|organism=Nannochloropsis gaditana|type=polypeptide|length=433bp
MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKV
IENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDE
SAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPT
VLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQ
IVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFH
RCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRN
RVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHR
ALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSG
VHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI back to topmRNA from alignment at CM002464.1:677506..679632+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4923 ID=rna4923|Name=rna4923|organism=Nannochloropsis gaditana|type=mRNA|length=2127bp|location=Sequence derived from alignment at CM002464.1:677506..679632+ (Nannochloropsis gaditana)
ATACAGGTTGCTAGCTTGGGTTGTAGTTGAGTAAGTAGCCAGGCTTGCAA
GGATTGCGGCATCGGTCACTCAGCGTTCCTCCGATTGCGTCCACCTTCGC
AAGCAGCGTCGTAGACCTGTCGGTCCCCGTAGCCCTCCTCTGCAGAAAGC
AGTATGATCTCTGCAATCTTTCTGGTAAATcagaagggggaggtcgTGGT
CAATCGACTGTATCGGGACGATGTTAGCCGGTCAATGGTGGACACGTTCC
GACACAAGGTTATTGCTTCGAAAGAGACGGGCTCCCAGGCCCCAATCAAG
GTCATCGAGAATGCGACCTTCCTGTACatccgccaccaccatctgTACCT
GGTTGCTGTCACGCGTTCCAACTTAAACCCTGCACTCGTGTTTGAATTCC
TATTTCGAATGGTCCGCATCTTCAAAGCGTACTTTGGAGAGCATTTTGAC
GAGAGCGCGGTTCGAAATCATTTTACGTTGGTTTACGAGCTCCTAGATGA
GACCATGGATTTCGGCTACCCACAGAACTGCGCCATTGAGGTCCTGCGGC
AATACATTAACCTTGGAACGGTTcaggcggagatggagcagCAAGAGCCG
ACGGTGCTGACGTCTCAGATCACGGGCCAGATCGATTGGCGGCGAGACGG
AATCCGGTATCGGAAGAATGAGGTGTACATCGACGTGCTCGAGTCCGTGA
ACATCCTCATGTCCGCCACCGGCAACGTCCTGCATTCCGATGTGACCGGT
CAGATCGTGATGAAGGCCTTGTTGTCGGGTTGGCCGGAGTGCAAGTTTGG
CCTCAACGACAAGCTGATcatggacagggaggccGCCGGCAAAGCCAGTG
GCGCCGTGACACGCCGGAGCGCAGGTGTGGAGATCGACGACTGCACATTT
CACCGCTGTGTCCGCCTGGGGCGCTTTGACGCGGATAGGACCATCACCTT
CATTCCCCCCGACGGCGAGTTCGAGCTAATGCGCTACCGCGTGACCGAGA
ACGTGAACCTTCCCTTTCGGCTGATTCCGGCCatccaagaggagggacgc
aaCCGTGTGGCTGTGAATGTCAAGGTCACCGCCAACTTCTCCTCCAAGTT
GTTCGGTCAGAACGTGGTCATCAAGGTAcggagagggcagggactgtggg
ggaggaagatgaccggagggaaggggaagaagaaggttCCGGACTCTCAG
CCGCTTCGAACCTtaccccccgcccctcgcccccccttctctccctcacc
cccccccccctttcctgcaggtccctgtcccccccaACACGGCCAAGACC
CATATCAACGTCTCCACGGGCCGGGCGCGCTTTGAGCCCGAGCACCGAGC
TCTGGTCTGGCGGATTAAGCGCTTCCCCGGGGGCTGCGAGTTCATGATTA
CCGCCGACGTCACCCTCATGcccagcaccagcaacaaGGCCTGGTCGCGC
CCCCCCATCCAGGTGGAGTTCCAGGTACCCATGTTCACGTCCTCAGGGGT
ACACGTCCGCTTCCTGCGCGTCTACGACAAGAGCGGATGTACGTAAAGCA
CGGCgagggacgtgggcgggggggagcaCATCGATTCTCACGCGTCTGTA
CCCACCTATGTTTGCCGCTTTCACCTTGTCGCAGATCAAACAAACCGCTG
GGTGCGATACATAACCAGAGCTGGTTCATTCTCGGTGCGTCACGTGGTGT
ACACGGAAACATTATCATGCACGTGTGCGAGGTCACATGTATTCCTTTCG
TGAATCAATATATTTTTCTAATGAGGGCTTGAACTTCGATGCTTGCGACC
AAAGTTTTATCCCGATGTGCGCATGATCATGTTGTGGAGATTCTGTCGGT
GACGTcagccttctcctgcatGGCTTTTCCTGATCTCCGTCGGTGAAGTC
GCGCTCAATTTTGGATAACTTACAAATTCTCTATTTTTCAAATATAGGTA
CGCATTTAGCGTGAGATATGAAGTTCAAGGCAACTGGGCCCTGATAGGAT
GATGAAAATGTTTATTGGGTATTTTTGTAAAGGAAACTCAACATGGTCGA
ACAGGAGAAGGTCCTGGGGTTCAATAACACACGTCTCTCGTCGACTAAAG
AACTCATCCGTTAACATCAGGAGGAAC back to topCoding sequence (CDS) from alignment at CM002464.1:677506..679632+ >rna4923 ID=rna4923|Name=rna4923|organism=Nannochloropsis gaditana|type=CDS|length=5208bp|location=Sequence derived from alignment at CM002464.1:677506..679632+ (Nannochloropsis gaditana)
ATGATCTCTGCAATCTTTCTGGTAAATcagaagggggaggtcgTGGTCAA
TCGACTGTATCGGGACGATGTTAGCCGGTCAATGGTGGACACGTTCCGAC
ACAAGGTTATTGCTTCGAAAGAGACGGGCTCCCAGGCCCCAATCAAGGTC
ATCGAGAATGCGACCTTCCTGTACatccgccaccaccatctgTACCTGGT
TGCTGTCACGCGTTCCAACTTAAACCCTGCACTCGTGTTTGAATTCCTAT
TTCGAATGGTCCGCATCTTCAAAGCGTACTTTGGAGAGCATTTTGACGAG
AGCGCGGTTCGAAATCATTTTACGTTGGTTTACGAGCTCCTAGATGAGAC
CATGGATTTCGGCTACCCACAGAACTGCGCCATTGAGGTCCTGCGGCAAT
ACATTAACCTTGGAACGGTTcaggcggagatggagcagCAAGAGCCGACG
GTGCTGACGTCTCAGATCACGGGCCAGATCGATTGGCGGCGAGACGGAAT
CCGGTATCGGAAGAATGAGGTGTACATCGACGTGCTCGAGTCCGTGAACA
TCCTCATGTCCGCCACCGGCAACGTCCTGCATTCCGATGTGACCGGTCAG
ATCGTGATGAAGGCCTTGTTGTCGGGTTGGCCGGAGTGCAAGTTTGGCCT
CAACGACAAGCTGATcatggacagggaggccGCCGGCAAAGCCAGTGGCG
CCGTGACACGCCGGAGCGCAGGTGTGGAGATCGACGACTGCACATTTCAC
CGCTGTGTCCGCCTGGGGCGCTTTGACGCGGATAGGACCATCACCTTCAT
TCCCCCCGACGGCGAGTTCGAGCTAATGCGCTACCGCGTGACCGAGAACG
TGAACCTTCCCTTTCGGCTGATTCCGGCCatccaagaggagggacgcaaC
CGTGTGGCTGTGAATGTCAAGGTCACCGCCAACTTCTCCTCCAAGTTGTT
CGGTCAGAACGTGGTCATCAAGgtccctgtcccccccaACACGGCCAAGA
CCCATATCAACGTCTCCACGGGCCGGGCGCGCTTTGAGCCCGAGCACCGA
GCTCTGGTCTGGCGGATTAAGCGCTTCCCCGGGGGCTGCGAGTTCATGAT
TACCGCCGACGTCACCCTCATGcccagcaccagcaacaaGGCCTGGTCGC
GCCCCCCCATCCAGGTGGAGTTCCAGGTACCCATGTTCACGTCCTCAGGG
GTACACGTCCGCTTCCTGCGCGTCTACGACAAGAGCGGATATCAAACAAA
CCGCTGGGTGCGATACATAACCAGAGCTGGTTCATTCTCGGTACGCATTT
AGATGATCTCTGCAATCTTTCTGGTAAATcagaagggggaggtcgTGGTC
AATCGACTGTATCGGGACGATGTTAGCCGGTCAATGGTGGACACGTTCCG
ACACAAGGTTATTGCTTCGAAAGAGACGGGCTCCCAGGCCCCAATCAAGG
TCATCGAGAATGCGACCTTCCTGTACatccgccaccaccatctgTACCTG
GTTGCTGTCACGCGTTCCAACTTAAACCCTGCACTCGTGTTTGAATTCCT
ATTTCGAATGGTCCGCATCTTCAAAGCGTACTTTGGAGAGCATTTTGACG
AGAGCGCGGTTCGAAATCATTTTACGTTGGTTTACGAGCTCCTAGATGAG
ACCATGGATTTCGGCTACCCACAGAACTGCGCCATTGAGGTCCTGCGGCA
ATACATTAACCTTGGAACGGTTcaggcggagatggagcagCAAGAGCCGA
CGGTGCTGACGTCTCAGATCACGGGCCAGATCGATTGGCGGCGAGACGGA
ATCCGGTATCGGAAGAATGAGGTGTACATCGACGTGCTCGAGTCCGTGAA
CATCCTCATGTCCGCCACCGGCAACGTCCTGCATTCCGATGTGACCGGTC
AGATCGTGATGAAGGCCTTGTTGTCGGGTTGGCCGGAGTGCAAGTTTGGC
CTCAACGACAAGCTGATcatggacagggaggccGCCGGCAAAGCCAGTGG
CGCCGTGACACGCCGGAGCGCAGGTGTGGAGATCGACGACTGCACATTTC
ACCGCTGTGTCCGCCTGGGGCGCTTTGACGCGGATAGGACCATCACCTTC
ATTCCCCCCGACGGCGAGTTCGAGCTAATGCGCTACCGCGTGACCGAGAA
CGTGAACCTTCCCTTTCGGCTGATTCCGGCCatccaagaggagggacgca
aCCGTGTGGCTGTGAATGTCAAGGTCACCGCCAACTTCTCCTCCAAGTTG
TTCGGTCAGAACGTGGTCATCAAGgtccctgtcccccccaACACGGCCAA
GACCCATATCAACGTCTCCACGGGCCGGGCGCGCTTTGAGCCCGAGCACC
GAGCTCTGGTCTGGCGGATTAAGCGCTTCCCCGGGGGCTGCGAGTTCATG
ATTACCGCCGACGTCACCCTCATGcccagcaccagcaacaaGGCCTGGTC
GCGCCCCCCCATCCAGGTGGAGTTCCAGGTACCCATGTTCACGTCCTCAG
GGGTACACGTCCGCTTCCTGCGCGTCTACGACAAGAGCGGATATCAAACA
AACCGCTGGGTGCGATACATAACCAGAGCTGGTTCATTCTCGGTACGCAT
TTAGATGATCTCTGCAATCTTTCTGGTAAATcagaagggggaggtcgTGG
TCAATCGACTGTATCGGGACGATGTTAGCCGGTCAATGGTGGACACGTTC
CGACACAAGGTTATTGCTTCGAAAGAGACGGGCTCCCAGGCCCCAATCAA
GGTCATCGAGAATGCGACCTTCCTGTACatccgccaccaccatctgTACC
TGGTTGCTGTCACGCGTTCCAACTTAAACCCTGCACTCGTGTTTGAATTC
CTATTTCGAATGGTCCGCATCTTCAAAGCGTACTTTGGAGAGCATTTTGA
CGAGAGCGCGGTTCGAAATCATTTTACGTTGGTTTACGAGCTCCTAGATG
AGACCATGGATTTCGGCTACCCACAGAACTGCGCCATTGAGGTCCTGCGG
CAATACATTAACCTTGGAACGGTTcaggcggagatggagcagCAAGAGCC
GACGGTGCTGACGTCTCAGATCACGGGCCAGATCGATTGGCGGCGAGACG
GAATCCGGTATCGGAAGAATGAGGTGTACATCGACGTGCTCGAGTCCGTG
AACATCCTCATGTCCGCCACCGGCAACGTCCTGCATTCCGATGTGACCGG
TCAGATCGTGATGAAGGCCTTGTTGTCGGGTTGGCCGGAGTGCAAGTTTG
GCCTCAACGACAAGCTGATcatggacagggaggccGCCGGCAAAGCCAGT
GGCGCCGTGACACGCCGGAGCGCAGGTGTGGAGATCGACGACTGCACATT
TCACCGCTGTGTCCGCCTGGGGCGCTTTGACGCGGATAGGACCATCACCT
TCATTCCCCCCGACGGCGAGTTCGAGCTAATGCGCTACCGCGTGACCGAG
AACGTGAACCTTCCCTTTCGGCTGATTCCGGCCatccaagaggagggacg
caaCCGTGTGGCTGTGAATGTCAAGGTCACCGCCAACTTCTCCTCCAAGT
TGTTCGGTCAGAACGTGGTCATCAAGgtccctgtcccccccaACACGGCC
AAGACCCATATCAACGTCTCCACGGGCCGGGCGCGCTTTGAGCCCGAGCA
CCGAGCTCTGGTCTGGCGGATTAAGCGCTTCCCCGGGGGCTGCGAGTTCA
TGATTACCGCCGACGTCACCCTCATGcccagcaccagcaacaaGGCCTGG
TCGCGCCCCCCCATCCAGGTGGAGTTCCAGGTACCCATGTTCACGTCCTC
AGGGGTACACGTCCGCTTCCTGCGCGTCTACGACAAGAGCGGATATCAAA
CAAACCGCTGGGTGCGATACATAACCAGAGCTGGTTCATTCTCGGTACGC
ATTTAGATGATCTCTGCAATCTTTCTGGTAAATcagaagggggaggtcgT
GGTCAATCGACTGTATCGGGACGATGTTAGCCGGTCAATGGTGGACACGT
TCCGACACAAGGTTATTGCTTCGAAAGAGACGGGCTCCCAGGCCCCAATC
AAGGTCATCGAGAATGCGACCTTCCTGTACatccgccaccaccatctgTA
CCTGGTTGCTGTCACGCGTTCCAACTTAAACCCTGCACTCGTGTTTGAAT
TCCTATTTCGAATGGTCCGCATCTTCAAAGCGTACTTTGGAGAGCATTTT
GACGAGAGCGCGGTTCGAAATCATTTTACGTTGGTTTACGAGCTCCTAGA
TGAGACCATGGATTTCGGCTACCCACAGAACTGCGCCATTGAGGTCCTGC
GGCAATACATTAACCTTGGAACGGTTcaggcggagatggagcagCAAGAG
CCGACGGTGCTGACGTCTCAGATCACGGGCCAGATCGATTGGCGGCGAGA
CGGAATCCGGTATCGGAAGAATGAGGTGTACATCGACGTGCTCGAGTCCG
TGAACATCCTCATGTCCGCCACCGGCAACGTCCTGCATTCCGATGTGACC
GGTCAGATCGTGATGAAGGCCTTGTTGTCGGGTTGGCCGGAGTGCAAGTT
TGGCCTCAACGACAAGCTGATcatggacagggaggccGCCGGCAAAGCCA
GTGGCGCCGTGACACGCCGGAGCGCAGGTGTGGAGATCGACGACTGCACA
TTTCACCGCTGTGTCCGCCTGGGGCGCTTTGACGCGGATAGGACCATCAC
CTTCATTCCCCCCGACGGCGAGTTCGAGCTAATGCGCTACCGCGTGACCG
AGAACGTGAACCTTCCCTTTCGGCTGATTCCGGCCatccaagaggaggga
cgcaaCCGTGTGGCTGTGAATGTCAAGGTCACCGCCAACTTCTCCTCCAA
GTTGTTCGGTCAGAACGTGGTCATCAAGgtccctgtcccccccaACACGG
CCAAGACCCATATCAACGTCTCCACGGGCCGGGCGCGCTTTGAGCCCGAG
CACCGAGCTCTGGTCTGGCGGATTAAGCGCTTCCCCGGGGGCTGCGAGTT
CATGATTACCGCCGACGTCACCCTCATGcccagcaccagcaacaaGGCCT
GGTCGCGCCCCCCCATCCAGGTGGAGTTCCAGGTACCCATGTTCACGTCC
TCAGGGGTACACGTCCGCTTCCTGCGCGTCTACGACAAGAGCGGATATCA
AACAAACCGCTGGGTGCGATACATAACCAGAGCTGGTTCATTCTCGGTAC
GCATTTAG back to top
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