EWM25769.1, cds4911 (CDS) Nannochloropsis gaditana

Overview
NameEWM25769.1
Unique Namecds4911
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:677659..678630 +
Alignment locationCM002464.1:678776..679043 +
Alignment locationCM002464.1:679140..679189 +
Alignment locationCM002464.1:679453..679464 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25769.1
Productap-2 complex subunit mu
Orig transcript idgnl|cribi|Naga_100168g4.5631.mrna
GeneAPM2
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:677659..678630 +
CM002464.1supercontigCM002464.1:678776..679043 +
CM002464.1supercontigCM002464.1:679140..679189 +
CM002464.1supercontigCM002464.1:679453..679464 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0030131clathrin adaptor complex
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR028565MHD
IPR018240Clathrin_mu_CS
IPR022775AP_mu_sigma_su
IPR008968Clathrin_mu_C
IPR001392Clathrin_mu
Homology
BLAST of EWM25769.1 vs. NCBI_GenBank
Match: gi|585107634|gb|EWM25769.1| (ap-2 complex subunit mu [Nannochloropsis gaditana])

HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 433/433 (100.00%), Postives = 433/433 (100.00%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI 433
            MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI
Sbjct:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI 433          
BLAST of EWM25769.1 vs. NCBI_GenBank
Match: gi|585107635|gb|EWM25770.1| (ap-2 complex subunit mu [Nannochloropsis gaditana])

HSP 1 Score: 898.656 bits (2321), Expect = 0.000e+0
Identity = 432/432 (100.00%), Postives = 432/432 (100.00%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432
            MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR
Sbjct:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432          
BLAST of EWM25769.1 vs. NCBI_GenBank
Match: gi|299473380|emb|CBN77778.1| (Clathrin assembly complex, medium subunit [Ectocarpus siliculosus])

HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 298/434 (68.66%), Postives = 362/434 (83.41%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQA-EMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI 433
            MISAI ++N+KGE+V++R YRDDV+R+  D FR +VIASKETGS API +++  TFLY RH +LYLVAVTR N+NPA+VFEFL++ +RIFKAYF   FDE  +RN+ TL+ EL+DETMD+GYPQ  +I+VLR YINLGT+++ + + QE   LTSQITG IDWRR+GIR+RKNEVYIDVLESVN+LMS+ G VL +DV+G+++MK LLSG P+CKFGLNDKLIM+R+A   A G   RR A V +DDCTFHRCVRLG+FDADRTITFIPP+GEFELMRYRV +NVNLP R+IPA+QEEGR RV +N+KV+A+FS KLFG N+V+KVPVPPNTA+  I+V +GRA++EPE RA+VWRIKR  GG E + TADV L PS   KAWSRPPIQ EFQVPMFTSSGV VRFL+VYDKSGY T RWVRYITRAG + +RI
Sbjct:    1 MISAILIINRKGEIVISRFYRDDVTRAAADAFRLQVIASKETGSSAPIMLLDGNTFLYTRHLNLYLVAVTRGNVNPAMVFEFLYQKIRIFKAYFKRDFDEDTLRNNMTLILELMDETMDYGYPQILSIDVLRTYINLGTIRSLDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVSGKVIMKTLLSGMPDCKFGLNDKLIMERDA--NARGRQDRRPA-VALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRGRVTINLKVSADFSYKLFGSNIVVKVPVPPNTARCLIHVGSGRAKYEPEQRAIVWRIKRMIGGAEAVFTADVELTPSIRGKAWSRPPIQAEFQVPMFTSSGVQVRFLKVYDKSGYLTKRWVRYITRAGHYQIRI 431          
BLAST of EWM25769.1 vs. NCBI_GenBank
Match: gi|219112401|ref|XP_002177952.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410837|gb|EEC50766.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0
Identity = 281/434 (64.75%), Postives = 362/434 (83.41%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRN-RVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI 433
            MIS I ++NQKG+++++R YRDDV R+  D+FR +V+A+KETG++AP+K IEN +FLY RH ++Y VA+TRSN+NPALVFE+LF++++I KAY GE FDE+A+RN+ TL+YEL+DETMDFGYPQNCA++VLR YINLGT + + ++ EP+ LTSQITG IDWRR+GIR++KNEVYIDVLESVN+L+S+TGNVL ++V G + M   L+G PECKFGLNDKL+++++           R   V+IDDCTFHRCVRLG+FDADRTITFIPPDGEFELMRYRVT+N+NLPFR+IPA+QE   N +V++++KV ANFS +LF  +VVIK+PVP NT+KT I  S GRA++EPE +A+VWR+KRF G  + +I A+V LMP+  ++ WSRPPI VEFQVPMFT SGVHVRFLRVYDKSGY TNRWVRYIT+AGS+ +RI
Sbjct:    1 MISMIMVLNQKGDIMISRQYRDDVGRAAADSFRLQVVAAKETGTEAPVKRIENCSFLYTRHLNMYFVALTRSNVNPALVFEYLFQLIKILKAYLGEEFDETAMRNNMTLIYELMDETMDFGYPQNCAVDVLRLYINLGTAKPQ-DEPEPSKLTSQITGAIDWRREGIRHKKNEVYIDVLESVNLLLSSTGNVLRNEVAGSVQMNTKLTGMPECKFGLNDKLVIEKDKED--------RKPSVDIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRIIPAVQESQNNTKVSIDLKVIANFSDQLFATHVVIKIPVPKNTSKTKIKHSFGRAKYEPEQQAIVWRVKRFAGKAQCIINAEVDLMPTVRSQPWSRPPINVEFQVPMFTGSGVHVRFLRVYDKSGYHTNRWVRYITKAGSYQIRI 425          
BLAST of EWM25769.1 vs. NCBI_GenBank
Match: gi|1072224683|gb|OEU09432.1| (clathrin adaptor, mu subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 619.772 bits (1597), Expect = 0.000e+0
Identity = 281/434 (64.75%), Postives = 363/434 (83.64%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEE-GRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI 433
            MIS I ++NQKG+++++R YRDDVSR+  D+FR +V+A+K TG++AP+  IEN +FLY RH +++ VAVTRSN+NPALVFE+L+++VRI K+Y G+ FDE+A+RN+ TL+YEL+DETMDFGYPQNCA++VL+ YINLG+V+A+ ++ EP+ LTSQITG IDWRR+GIR++KNEVYIDVLESVN+L+S+TG +L ++VTG + M   L+G PECKFGLNDKL++++E          +R  GVEIDDCTFHRCVRLG+FDADRTITFIPPDGE+ELM+YRVT+N+NLPFR+IP IQEE    ++++N+KV ANFS +LF  +VVIK+PVP NTAK  I  S GRA++EPE +A+VWR+KRFPG  E  I+ADV LMP+   K WSRPPI  EFQVPMFT+SGVHVRFLRVYDKSGY TNRWVRYIT+AG++ +RI
Sbjct:    1 MISMIMILNQKGDIMISRQYRDDVSRAGADSFRLQVVATKNTGTEAPVVRIENNSFLYTRHLNMFFVAVTRSNVNPALVFEYLYQLVRILKSYLGDEFDENAMRNNMTLIYELMDETMDFGYPQNCAVDVLKLYINLGSVKAQ-DEPEPSQLTSQITGAIDWRREGIRHKKNEVYIDVLESVNLLLSSTGAILRNEVTGAVQMNTKLTGMPECKFGLNDKLVIEKEG---------QRKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEYELMKYRVTDNINLPFRIIPTIQEEQSLTKISINLKVIANFSDQLFATHVVIKIPVPKNTAKAKIKHSFGRAKYEPEQQAIVWRVKRFPGKAECHISADVDLMPTVRPKIWSRPPINCEFQVPMFTASGVHVRFLRVYDKSGYHTNRWVRYITKAGNYQIRI 424          
BLAST of EWM25769.1 vs. NCBI_GenBank
Match: gi|397572964|gb|EJK48489.1| (hypothetical protein THAOC_32705 [Thalassiosira oceanica])

HSP 1 Score: 619.772 bits (1597), Expect = 0.000e+0
Identity = 278/433 (64.20%), Postives = 360/433 (83.14%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI 433
            MIS+I ++N +GE++++R YRDDVSR   D+FR +VIA+KE  SQ PIK IEN +FLY RH ++Y VA+T++N+NPALVFE+L++ +R+ KAY GE FDE+++RN+ TL+YEL+DETMDFGYPQNCA++VLR YINLG V+ + ++ EP  LT QITG IDWRR+GIR++KNEVYIDVLESVN+L+S+ GNVL S+VTG++ M   L+G PECKFGLNDKL++++ + G       R+++GVEIDDCTFHRCVRLG+FDADRTITFIPPDGEFELMRYRV +NVN+PFRLIPA+QEEG+ + ++N+KV ANFS KLF  +VVI+VPVP NT+K+ I  S GRA++EPE  A+VWRIK+FPG  E M++AD+ L+ +   K+W RPPI VEFQVPMFT+SGVHVRFLRVYDK+GY TNRWVRYIT+ G + ++I
Sbjct:    1 MISSIMILNARGEIMISRQYRDDVSRVAADSFRIQVIAAKEASSQPPIKRIENCSFLYTRHLNMYFVALTKANVNPALVFEYLYQKIRVLKAYLGEDFDENSMRNNMTLIYELMDETMDFGYPQNCAVDVLRLYINLGDVKPQ-DEPEPAQLTKQITGAIDWRREGIRHKKNEVYIDVLESVNLLISSAGNVLRSEVTGRVQMNTKLTGMPECKFGLNDKLVIEKSSEG-------RKNSGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVNDNVNMPFRLIPAVQEEGQTKCSINLKVIANFSEKLFATHVVIRVPVPKNTSKSKIKNSFGRAKYEPEQNAIVWRIKKFPGKAECMLSADMELVRTVRPKSWERPPISVEFQVPMFTASGVHVRFLRVYDKAGYHTNRWVRYITKGGGYQIKI 425          
BLAST of EWM25769.1 vs. NCBI_GenBank
Match: gi|223998210|ref|XP_002288778.1| (clathrin adaptor complex subunit [Thalassiosira pseudonana CCMP1335] >gi|220975886|gb|EED94214.1| clathrin adaptor complex subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 278/433 (64.20%), Postives = 356/433 (82.22%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI 433
            MIS I ++NQKGE++++R YRDDVSR   D+FR +VIA+KE  SQ PIK IEN +FLY RH ++Y VA+T+SN+NPALVFE+LF+ +R+ KAY GE FDE+++RN+ TL+YEL+DETMDFGYPQNCA++VLR YINLG V+ + ++ EP  LT QITG IDWRR+GIRY+KNEVYIDVLESVN+L+S++G+VL ++VTG++ M   L+G PECKFGLNDKL++++E++        R+   V I+DCTFHRCVRLG+FDADRTITFIPPDGEFELMRYRV +NVN PF+L PA+QEEG+ + ++N+K+ A FS KLF  +VV+K+PVP NT+KT I  S GRA++EPE  A+VWRIKRFPG  E M++AD+ L+ +   KAW RPPI VEFQVPMFT+SGVHVRFLRV+DKSGY TNRWVRYIT+AG + +RI
Sbjct:    1 MISMIMVLNQKGEIMISRQYRDDVSRVAADSFRLQVIAAKEASSQPPIKRIENCSFLYTRHLNMYFVALTKSNVNPALVFEYLFQKIRVLKAYLGEEFDENSMRNNMTLIYELMDETMDFGYPQNCAVDVLRLYINLGNVKPQ-DEPEPEQLTKQITGAIDWRREGIRYKKNEVYIDVLESVNLLISSSGSVLRNEVTGRVQMNTKLTGMPECKFGLNDKLVIEKESSA------ARKKTLVNINDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVNDNVNRPFKLFPAVQEEGQTKCSINLKMVAEFSEKLFATHVVVKIPVPKNTSKTKIKNSFGRAKYEPEQNAIVWRIKRFPGKAECMLSADLELVRTVRPKAWERPPINVEFQVPMFTASGVHVRFLRVFDKSGYHTNRWVRYITKAGGYQIRI 426          
BLAST of EWM25769.1 vs. NCBI_GenBank
Match: gi|1210517806|dbj|GAX23207.1| (AP-2 complex subunit mu-1 [Fistulifera solaris] >gi|1210530876|dbj|GAX10416.1| AP-2 complex subunit mu-1 [Fistulifera solaris])

HSP 1 Score: 605.52 bits (1560), Expect = 0.000e+0
Identity = 281/420 (66.90%), Postives = 350/420 (83.33%), Query Frame = 0
Query:   15 VVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGR-NRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI 433
            +++R YRDDV R+  D+FR +V+A+KETG+ APIK IEN +FLY RH ++Y VA+TRSN+NPALVFE+LF++V+I KAY GE FDE+A+RN+ TL+YEL+DETMDFGYPQNCA++VLR YINLG V+ + ++ EP+ LTSQITG IDWRR+GIR++KNEVYIDVLESVN+L+S+TG+VL ++V G + M   L+G PECKFGLNDKL++D++   K  G  T     VEIDDCTFHRCVRLG+FDADRTITFIPPDGEFELM YRVT+N+NLPFR+IPA+QEE    +V++NVKV A+FS +LF  +VVIK+PVP NT+K  I  S GRA++EPE  A+VWR+KRF G  E +ITADV LMP T  K WSRPPIQ+EFQVPMFT+SGVHVRFLRVYDKSGY TNRWVRYIT+AG++ +RI
Sbjct:    1 MISRQYRDDVGRAAADSFRLQVVAAKETGTDAPIKRIENCSFLYTRHLNMYFVAMTRSNVNPALVFEYLFQLVKILKAYLGEEFDENAMRNNMTLIYELMDETMDFGYPQNCAVDVLRLYINLGNVKPQ-DEPEPSQLTSQITGAIDWRREGIRHKKNEVYIDVLESVNLLLSSTGSVLRNEVQGAVQMNTKLTGMPECKFGLNDKLVIDKD---KGDGKQT-----VEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMHYRVTDNINLPFRVIPAVQEENNMTKVSINVKVIASFSDQLFATHVVIKIPVPKNTSKAKIKNSFGRAKYEPEQNAIVWRVKRFAGKAECIITADVDLMPMTRPKPWSRPPIQLEFQVPMFTASGVHVRFLRVYDKSGYHTNRWVRYITKAGNYQIRI 411          
BLAST of EWM25769.1 vs. NCBI_GenBank
Match: gi|635369155|emb|CCI42630.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 602.823 bits (1553), Expect = 0.000e+0
Identity = 273/436 (62.61%), Postives = 352/436 (80.73%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEME--QQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDR-EAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI 433
            MISA+FL+ QKGE+V++R YRDDVSR   DTFR +VIA+KETGS  PIK I+  +FLY RH +LYLVAVTR+N+N ALVF+FL+++  IFK YFG+ + E ++R++FTLVYELLDET+D+GYPQNC+I+VL+ YINLG++ +       +P+ LTSQITG IDWRR+GI+Y++NEVY+DV ESVN+LMS+ G VL ++V GQ+VMK  L+G PECK GLNDKLIM + +AAG       R +  VEIDDCTFHRCVRLG+FDADRTITFIPPDGEFELM+YRVTENVNLPF+++PA QE+G  R++V +K+ A FS +LF  N+VIK+P PPNTA+  IN   GRA+ EPE+ A+VWR+++F G  E M+ A+V ++ ST  K WSRPPIQ+EFQVPMFTSSG+HVRFL+V++K  YQT +WVRY+TRAG + +RI
Sbjct:    1 MISALFLLGQKGEIVLHRFYRDDVSRRAADTFRMQVIAAKETGSLPPIKHIDGCSFLYTRHENLYLVAVTRANINTALVFQFLYQLNGIFKEYFGKKYSEESIRDNFTLVYELLDETVDYGYPQNCSIDVLKMYINLGSLSSSDGPLATQPSQLTSQITGAIDWRREGIKYKRNEVYLDVFESVNLLMSSNGTVLRNEVAGQVVMKTSLTGMPECKLGLNDKLIMQKGDAAGSKIPGQKRATRDVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMKYRVTENVNLPFKIMPAYQEQGTTRLSVTLKIAATFSPRLFATNLVIKIPTPPNTARARINAPIGRAKHEPENHAIVWRVRKFQGKLERMLDAEVEMLKSTREKVWSRPPIQIEFQVPMFTSSGLHVRFLKVFEKGSYQTTKWVRYVTRAGQYQLRI 436          
BLAST of EWM25769.1 vs. NCBI_GenBank
Match: gi|695439572|ref|XP_009532744.1| (hypothetical protein PHYSODRAFT_317496 [Phytophthora sojae] >gi|348672591|gb|EGZ12411.1| hypothetical protein PHYSODRAFT_317496 [Phytophthora sojae])

HSP 1 Score: 598.201 bits (1541), Expect = 0.000e+0
Identity = 275/437 (62.93%), Postives = 351/437 (80.32%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQ---QEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRR-SAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI 433
            MISA+FL++QKGEVV+NR YRDDVSR   D FR +VIA+KETG+  P+KVI+  +FLY RH +LYLVAV+R+N+N ALVF+FL+++  IFK YFG+ ++E  +R++FTLVYELLDETMD GYPQNC+ +VL+ +INLG+  A  E      P+ LTSQITG IDWRR+GIRY++NEVY+DV ESVN+LMS+TG VL ++V GQ+VMK LL+G PECK GLNDKL M +  A  A  A  +R S  VEIDDCTFHRCVRLG+FDADRTITFIPPDGEFELM+YRVTEN+NLPF+++PA QE+G  R++V +K+ + FS ++F  NVVIK+P PPNTA+  INV  GRA+ EPE+ A+VWRI++F G  E M+ A+V +M  T  K WSRPP+Q+EFQVPMFTSSG+HVRFL+V++KS Y T +WVRY+TRAG + +RI
Sbjct:    1 MISALFLISQKGEVVLNRFYRDDVSRRAADNFRLQVIAAKETGTLPPVKVIDGCSFLYTRHENLYLVAVSRANINAALVFQFLYQLNVIFKEYFGKKYNEETIRDNFTLVYELLDETMDHGYPQNCSSDVLKLFINLGSSLATPENPGGAPPSQLTSQITGAIDWRREGIRYKRNEVYLDVFESVNLLMSSTGTVLRNEVAGQVVMKTLLTGMPECKLGLNDKLTMQKGDAPSAKVAGQKRGSREVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMKYRVTENINLPFKIMPAYQEQGTTRLSVTLKLASLFSPRMFATNVVIKIPTPPNTARARINVPIGRAKHEPENHAIVWRIRKFQGKLERMLDAEVEMMKGTKEKLWSRPPLQIEFQVPMFTSSGLHVRFLKVFEKSSYPTTKWVRYVTRAGQYQLRI 437          
The following BLAST results are available for this feature:
BLAST of EWM25769.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107634|gb|EWM25769.1|0.000e+0100.00ap-2 complex subunit mu [Nannochloropsis gaditana][more]
gi|585107635|gb|EWM25770.1|0.000e+0100.00ap-2 complex subunit mu [Nannochloropsis gaditana][more]
gi|299473380|emb|CBN77778.1|0.000e+068.66Clathrin assembly complex, medium subunit [Ectocar... [more]
gi|219112401|ref|XP_002177952.1|0.000e+064.75predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072224683|gb|OEU09432.1|0.000e+064.75clathrin adaptor, mu subunit [Fragilariopsis cylin... [more]
gi|397572964|gb|EJK48489.1|0.000e+064.20hypothetical protein THAOC_32705 [Thalassiosira oc... [more]
gi|223998210|ref|XP_002288778.1|0.000e+064.20clathrin adaptor complex subunit [Thalassiosira ps... [more]
gi|1210517806|dbj|GAX23207.1|0.000e+066.90AP-2 complex subunit mu-1 [Fistulifera solaris] >g... [more]
gi|635369155|emb|CCI42630.1|0.000e+062.61unnamed protein product [Albugo candida][more]
gi|695439572|ref|XP_009532744.1|0.000e+062.93hypothetical protein PHYSODRAFT_317496 [Phytophtho... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4923rna4923Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications