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Properties
| Property Name | Value |
|---|
| Product | ap-2 complex subunit mu |
| Orig transcript id | gnl|cribi|Naga_100168g4.5632.mrna |
| Orig protein id | gnl|cribi|Naga_100168g4.5632 |
| Gene | APM2 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:677253..679632 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4922 ID=rna4922|Name=rna4922|organism=Nannochloropsis gaditana|type=mRNA|length=1177bp
CGAACCCAATATAGGCTTGACAGTATCACTTTTGTCCTTGGTTACAGGAG
GGTTTTGGTAGAGCAAATGGTACATCGCGCGTCAGCGGATGCGTTCCTTT
TGGACCAAAGCAATATCATGGTTCGTCGCCTCATTCTTATTCTTCATTCC
ATGCCGCTTTCCATGATAGCTTGAGGCGGCAGGGGCGGGGATTACATTTC
GACGTGATACAGCTGGTGACACTTCGCGGGAGCATGACTTCACGGCCGAA
TTGCTGGCATCGATGCCTTATGATGAGAAAAATAATTCCATTCTTTTTTC
CTGTGGCACTTTTCATGGTTTTTTCATTCCTGGGACCAGTCCAAGCTGAC
AATCTCCCCTCTAAACCTGTGCTTGCACCACTCGATAACGCTGCTCCTGA
GACAGAAAATGTCGCTACACCCACAGCAAGTGCACAATCAGGAGCTCGCT
CCAGTGATCCTCCTGAGCATATTGCTTCGAGCGGACCGATCTCTAGTGCC
ATCCCTAGAAGTCCCCGGGAGTCCATCGACATTGGAGACCCGATTGTTCA
GGAATCTGCCATGCTTGCCATGACGGACGTAAATCCGGTCGTGGGTGAGG
CGATCGGCTGGCAAATTGTACGTGCTGATACACAGAAATTCACTTCTGGA
ACGTACTATTTGTTGCAGGTAGAGCTTCGTACCAAAACACGTTGCGAGGC
GCACGAGGTCACCGTCTTCCAGGATGCCCGGTCTCAAATATTGGAGAAGC
AGGGGTCTGGGGACATTGTGCCCTGCAATGCCTCCCTGTCCCTGCGTGAG
CCTTGACACTGGAAGCCTTTAAATTGAGGGATGGGAGAAGACGTTTGAGA
GAGGATGACAGAAATGCCTTTCAGTGCAAATCGAGCGCTTATGTCTGCAA
TACCATTGGAGGGACTAGGCCCAGCTCTCGTGTTTCTATACGAACGGAAT
GCTATGTAAGCGTCGGAACAAATTAATATATGAATGTATATAAGTATATA
TATATATTTGTAAAGGGATTGGTATGTCGCTGCACCTCAGGTAACATGAA
GCATTTAAATTAAGCTTAAGGGAAAAGTTCATCATGAATTCGCAATAGTG
GACATCAAATTTCTTATCATTTTTTGAATTCTTCATTATGCTGAGACGCA
CTAACTCCTTCCTAGATAGAAATCACT back to topprotein sequence of rna4922 >rna4922-protein ID=rna4922-protein|Name=rna4922|organism=Nannochloropsis gaditana|type=polypeptide|length=452bp
MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKV
IENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDE
SAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPT
VLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQ
IVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFH
RCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRN
RVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHR
ALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSG
VHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRHVVYTETLSCTCARSHVF
LS back to topmRNA from alignment at CM002464.1:677253..679632+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4922 ID=rna4922|Name=rna4922|organism=Nannochloropsis gaditana|type=mRNA|length=2380bp|location=Sequence derived from alignment at CM002464.1:677253..679632+ (Nannochloropsis gaditana)
GCCCAGGAGTTTGGCTGGCCTGTCCCCCATGGGCGTGAGCCTTACCTACG
GCATTGCGTACAAATAATAGTTTTGCGTTAGCATCTGGATGCATGAAGGA
AGTAAAGAAAAATCTTTAGTGCCTCGGTGCTGCATTCTTCAATTATTTGT
ACCATTGCCGGTCTTGAAGCAATCGCCAAGAAAGTCGTCCTGTTCTCTGC
CCCCCAGCTGCTACAAACACATTGATCTATCCCATTCTATACGCCGCTCT
GATATACAGGTTGCTAGCTTGGGTTGTAGTTGAGTAAGTAGCCAGGCTTG
CAAGGATTGCGGCATCGGTCACTCAGCGTTCCTCCGATTGCGTCCACCTT
CGCAAGCAGCGTCGTAGACCTGTCGGTCCCCGTAGCCCTCCTCTGCAGAA
AGCAGTATGATCTCTGCAATCTTTCTGGTAAATcagaagggggaggtcgT
GGTCAATCGACTGTATCGGGACGATGTTAGCCGGTCAATGGTGGACACGT
TCCGACACAAGGTTATTGCTTCGAAAGAGACGGGCTCCCAGGCCCCAATC
AAGGTCATCGAGAATGCGACCTTCCTGTACatccgccaccaccatctgTA
CCTGGTTGCTGTCACGCGTTCCAACTTAAACCCTGCACTCGTGTTTGAAT
TCCTATTTCGAATGGTCCGCATCTTCAAAGCGTACTTTGGAGAGCATTTT
GACGAGAGCGCGGTTCGAAATCATTTTACGTTGGTTTACGAGCTCCTAGA
TGAGACCATGGATTTCGGCTACCCACAGAACTGCGCCATTGAGGTCCTGC
GGCAATACATTAACCTTGGAACGGTTcaggcggagatggagcagCAAGAG
CCGACGGTGCTGACGTCTCAGATCACGGGCCAGATCGATTGGCGGCGAGA
CGGAATCCGGTATCGGAAGAATGAGGTGTACATCGACGTGCTCGAGTCCG
TGAACATCCTCATGTCCGCCACCGGCAACGTCCTGCATTCCGATGTGACC
GGTCAGATCGTGATGAAGGCCTTGTTGTCGGGTTGGCCGGAGTGCAAGTT
TGGCCTCAACGACAAGCTGATcatggacagggaggccGCCGGCAAAGCCA
GTGGCGCCGTGACACGCCGGAGCGCAGGTGTGGAGATCGACGACTGCACA
TTTCACCGCTGTGTCCGCCTGGGGCGCTTTGACGCGGATAGGACCATCAC
CTTCATTCCCCCCGACGGCGAGTTCGAGCTAATGCGCTACCGCGTGACCG
AGAACGTGAACCTTCCCTTTCGGCTGATTCCGGCCatccaagaggaggga
cgcaaCCGTGTGGCTGTGAATGTCAAGGTCACCGCCAACTTCTCCTCCAA
GTTGTTCGGTCAGAACGTGGTCATCAAGGTAcggagagggcagggactgt
gggggaggaagatgaccggagggaaggggaagaagaaggttCCGGACTCT
CAGCCGCTTCGAACCTtaccccccgcccctcgcccccccttctctccctc
acccccccccccctttcctgcaggtccctgtcccccccaACACGGCCAAG
ACCCATATCAACGTCTCCACGGGCCGGGCGCGCTTTGAGCCCGAGCACCG
AGCTCTGGTCTGGCGGATTAAGCGCTTCCCCGGGGGCTGCGAGTTCATGA
TTACCGCCGACGTCACCCTCATGcccagcaccagcaacaaGGCCTGGTCG
CGCCCCCCCATCCAGGTGGAGTTCCAGGTACCCATGTTCACGTCCTCAGG
GGTACACGTCCGCTTCCTGCGCGTCTACGACAAGAGCGGATGTACGTAAA
GCACGGCgagggacgtgggcgggggggagcaCATCGATTCTCACGCGTCT
GTACCCACCTATGTTTGCCGCTTTCACCTTGTCGCAGATCAAACAAACCG
CTGGGTGCGATACATAACCAGAGCTGGTTCATTCTCGGTGCGTCACGTGG
TGTACACGGAAACATTATCATGCACGTGTGCGAGGTCACATGTATTCCTT
TCGTGAATCAATATATTTTTCTAATGAGGGCTTGAACTTCGATGCTTGCG
ACCAAAGTTTTATCCCGATGTGCGCATGATCATGTTGTGGAGATTCTGTC
GGTGACGTcagccttctcctgcatGGCTTTTCCTGATCTCCGTCGGTGAA
GTCGCGCTCAATTTTGGATAACTTACAAATTCTCTATTTTTCAAATATAG
GTACGCATTTAGCGTGAGATATGAAGTTCAAGGCAACTGGGCCCTGATAG
GATGATGAAAATGTTTATTGGGTATTTTTGTAAAGGAAACTCAACATGGT
CGAACAGGAGAAGGTCCTGGGGTTCAATAACACACGTCTCTCGTCGACTA
AAGAACTCATCCGTTAACATCAGGAGGAAC back to topCoding sequence (CDS) from alignment at CM002464.1:677253..679632+ >rna4922 ID=rna4922|Name=rna4922|organism=Nannochloropsis gaditana|type=CDS|length=4077bp|location=Sequence derived from alignment at CM002464.1:677253..679632+ (Nannochloropsis gaditana)
ATGATCTCTGCAATCTTTCTGGTAAATcagaagggggaggtcgTGGTCAA
TCGACTGTATCGGGACGATGTTAGCCGGTCAATGGTGGACACGTTCCGAC
ACAAGGTTATTGCTTCGAAAGAGACGGGCTCCCAGGCCCCAATCAAGGTC
ATCGAGAATGCGACCTTCCTGTACatccgccaccaccatctgTACCTGGT
TGCTGTCACGCGTTCCAACTTAAACCCTGCACTCGTGTTTGAATTCCTAT
TTCGAATGGTCCGCATCTTCAAAGCGTACTTTGGAGAGCATTTTGACGAG
AGCGCGGTTCGAAATCATTTTACGTTGGTTTACGAGCTCCTAGATGAGAC
CATGGATTTCGGCTACCCACAGAACTGCGCCATTGAGGTCCTGCGGCAAT
ACATTAACCTTGGAACGGTTcaggcggagatggagcagCAAGAGCCGACG
GTGCTGACGTCTCAGATCACGGGCCAGATCGATTGGCGGCGAGACGGAAT
CCGGTATCGGAAGAATGAGGTGTACATCGACGTGCTCGAGTCCGTGAACA
TCCTCATGTCCGCCACCGGCAACGTCCTGCATTCCGATGTGACCGGTCAG
ATCGTGATGAAGGCCTTGTTGTCGGGTTGGCCGGAGTGCAAGTTTGGCCT
CAACGACAAGCTGATcatggacagggaggccGCCGGCAAAGCCAGTGGCG
CCGTGACACGCCGGAGCGCAGGTGTGGAGATCGACGACTGCACATTTCAC
CGCTGTGTCCGCCTGGGGCGCTTTGACGCGGATAGGACCATCACCTTCAT
TCCCCCCGACGGCGAGTTCGAGCTAATGCGCTACCGCGTGACCGAGAACG
TGAACCTTCCCTTTCGGCTGATTCCGGCCatccaagaggagggacgcaaC
CGTGTGGCTGTGAATGTCAAGGTCACCGCCAACTTCTCCTCCAAGTTGTT
CGGTCAGAACGTGGTCATCAAGgtccctgtcccccccaACACGGCCAAGA
CCCATATCAACGTCTCCACGGGCCGGGCGCGCTTTGAGCCCGAGCACCGA
GCTCTGGTCTGGCGGATTAAGCGCTTCCCCGGGGGCTGCGAGTTCATGAT
TACCGCCGACGTCACCCTCATGcccagcaccagcaacaaGGCCTGGTCGC
GCCCCCCCATCCAGGTGGAGTTCCAGGTACCCATGTTCACGTCCTCAGGG
GTACACGTCCGCTTCCTGCGCGTCTACGACAAGAGCGGATATCAAACAAA
CCGCTGGGTGCGATACATAACCAGAGCTGGTTCATTCTCGGTGCGTCACG
TGGTGTACACGGAAACATTATCATGCACGTGTGCGAGGTCACATGTATTC
CTTTCGTGAATGATCTCTGCAATCTTTCTGGTAAATcagaagggggaggt
cgTGGTCAATCGACTGTATCGGGACGATGTTAGCCGGTCAATGGTGGACA
CGTTCCGACACAAGGTTATTGCTTCGAAAGAGACGGGCTCCCAGGCCCCA
ATCAAGGTCATCGAGAATGCGACCTTCCTGTACatccgccaccaccatct
gTACCTGGTTGCTGTCACGCGTTCCAACTTAAACCCTGCACTCGTGTTTG
AATTCCTATTTCGAATGGTCCGCATCTTCAAAGCGTACTTTGGAGAGCAT
TTTGACGAGAGCGCGGTTCGAAATCATTTTACGTTGGTTTACGAGCTCCT
AGATGAGACCATGGATTTCGGCTACCCACAGAACTGCGCCATTGAGGTCC
TGCGGCAATACATTAACCTTGGAACGGTTcaggcggagatggagcagCAA
GAGCCGACGGTGCTGACGTCTCAGATCACGGGCCAGATCGATTGGCGGCG
AGACGGAATCCGGTATCGGAAGAATGAGGTGTACATCGACGTGCTCGAGT
CCGTGAACATCCTCATGTCCGCCACCGGCAACGTCCTGCATTCCGATGTG
ACCGGTCAGATCGTGATGAAGGCCTTGTTGTCGGGTTGGCCGGAGTGCAA
GTTTGGCCTCAACGACAAGCTGATcatggacagggaggccGCCGGCAAAG
CCAGTGGCGCCGTGACACGCCGGAGCGCAGGTGTGGAGATCGACGACTGC
ACATTTCACCGCTGTGTCCGCCTGGGGCGCTTTGACGCGGATAGGACCAT
CACCTTCATTCCCCCCGACGGCGAGTTCGAGCTAATGCGCTACCGCGTGA
CCGAGAACGTGAACCTTCCCTTTCGGCTGATTCCGGCCatccaagaggag
ggacgcaaCCGTGTGGCTGTGAATGTCAAGGTCACCGCCAACTTCTCCTC
CAAGTTGTTCGGTCAGAACGTGGTCATCAAGgtccctgtcccccccaACA
CGGCCAAGACCCATATCAACGTCTCCACGGGCCGGGCGCGCTTTGAGCCC
GAGCACCGAGCTCTGGTCTGGCGGATTAAGCGCTTCCCCGGGGGCTGCGA
GTTCATGATTACCGCCGACGTCACCCTCATGcccagcaccagcaacaaGG
CCTGGTCGCGCCCCCCCATCCAGGTGGAGTTCCAGGTACCCATGTTCACG
TCCTCAGGGGTACACGTCCGCTTCCTGCGCGTCTACGACAAGAGCGGATA
TCAAACAAACCGCTGGGTGCGATACATAACCAGAGCTGGTTCATTCTCGG
TGCGTCACGTGGTGTACACGGAAACATTATCATGCACGTGTGCGAGGTCA
CATGTATTCCTTTCGTGAATGATCTCTGCAATCTTTCTGGTAAATcagaa
gggggaggtcgTGGTCAATCGACTGTATCGGGACGATGTTAGCCGGTCAA
TGGTGGACACGTTCCGACACAAGGTTATTGCTTCGAAAGAGACGGGCTCC
CAGGCCCCAATCAAGGTCATCGAGAATGCGACCTTCCTGTACatccgcca
ccaccatctgTACCTGGTTGCTGTCACGCGTTCCAACTTAAACCCTGCAC
TCGTGTTTGAATTCCTATTTCGAATGGTCCGCATCTTCAAAGCGTACTTT
GGAGAGCATTTTGACGAGAGCGCGGTTCGAAATCATTTTACGTTGGTTTA
CGAGCTCCTAGATGAGACCATGGATTTCGGCTACCCACAGAACTGCGCCA
TTGAGGTCCTGCGGCAATACATTAACCTTGGAACGGTTcaggcggagatg
gagcagCAAGAGCCGACGGTGCTGACGTCTCAGATCACGGGCCAGATCGA
TTGGCGGCGAGACGGAATCCGGTATCGGAAGAATGAGGTGTACATCGACG
TGCTCGAGTCCGTGAACATCCTCATGTCCGCCACCGGCAACGTCCTGCAT
TCCGATGTGACCGGTCAGATCGTGATGAAGGCCTTGTTGTCGGGTTGGCC
GGAGTGCAAGTTTGGCCTCAACGACAAGCTGATcatggacagggaggccG
CCGGCAAAGCCAGTGGCGCCGTGACACGCCGGAGCGCAGGTGTGGAGATC
GACGACTGCACATTTCACCGCTGTGTCCGCCTGGGGCGCTTTGACGCGGA
TAGGACCATCACCTTCATTCCCCCCGACGGCGAGTTCGAGCTAATGCGCT
ACCGCGTGACCGAGAACGTGAACCTTCCCTTTCGGCTGATTCCGGCCatc
caagaggagggacgcaaCCGTGTGGCTGTGAATGTCAAGGTCACCGCCAA
CTTCTCCTCCAAGTTGTTCGGTCAGAACGTGGTCATCAAGgtccctgtcc
cccccaACACGGCCAAGACCCATATCAACGTCTCCACGGGCCGGGCGCGC
TTTGAGCCCGAGCACCGAGCTCTGGTCTGGCGGATTAAGCGCTTCCCCGG
GGGCTGCGAGTTCATGATTACCGCCGACGTCACCCTCATGcccagcacca
gcaacaaGGCCTGGTCGCGCCCCCCCATCCAGGTGGAGTTCCAGGTACCC
ATGTTCACGTCCTCAGGGGTACACGTCCGCTTCCTGCGCGTCTACGACAA
GAGCGGATATCAAACAAACCGCTGGGTGCGATACATAACCAGAGCTGGTT
CATTCTCGGTGCGTCACGTGGTGTACACGGAAACATTATCATGCACGTGT
GCGAGGTCACATGTATTCCTTTCGTGA back to top
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