EWM25770.1, cds4910 (CDS) Nannochloropsis gaditana

Overview
NameEWM25770.1
Unique Namecds4910
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:677659..678630 +
Alignment locationCM002464.1:678776..679043 +
Alignment locationCM002464.1:679140..679258 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25770.1
Productap-2 complex subunit mu
Orig transcript idgnl|cribi|Naga_100168g4.5632.mrna
GeneAPM2
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:677659..678630 +
CM002464.1supercontigCM002464.1:678776..679043 +
CM002464.1supercontigCM002464.1:679140..679258 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0030131clathrin adaptor complex
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR028565MHD
IPR018240Clathrin_mu_CS
IPR008968Clathrin_mu_C
IPR022775AP_mu_sigma_su
IPR001392Clathrin_mu
Homology
BLAST of EWM25770.1 vs. NCBI_GenBank
Match: gi|585107635|gb|EWM25770.1| (ap-2 complex subunit mu [Nannochloropsis gaditana])

HSP 1 Score: 941.799 bits (2433), Expect = 0.000e+0
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRHVVYTETLSCTCARSHVFLS 452
            MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRHVVYTETLSCTCARSHVFLS
Sbjct:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRHVVYTETLSCTCARSHVFLS 452          
BLAST of EWM25770.1 vs. NCBI_GenBank
Match: gi|585107634|gb|EWM25769.1| (ap-2 complex subunit mu [Nannochloropsis gaditana])

HSP 1 Score: 898.656 bits (2321), Expect = 0.000e+0
Identity = 432/432 (100.00%), Postives = 432/432 (100.00%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432
            MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR
Sbjct:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432          
BLAST of EWM25770.1 vs. NCBI_GenBank
Match: gi|299473380|emb|CBN77778.1| (Clathrin assembly complex, medium subunit [Ectocarpus siliculosus])

HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 297/433 (68.59%), Postives = 361/433 (83.37%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQA-EMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432
            MISAI ++N+KGE+V++R YRDDV+R+  D FR +VIASKETGS API +++  TFLY RH +LYLVAVTR N+NPA+VFEFL++ +RIFKAYF   FDE  +RN+ TL+ EL+DETMD+GYPQ  +I+VLR YINLGT+++ + + QE   LTSQITG IDWRR+GIR+RKNEVYIDVLESVN+LMS+ G VL +DV+G+++MK LLSG P+CKFGLNDKLIM+R+A   A G   RR A V +DDCTFHRCVRLG+FDADRTITFIPP+GEFELMRYRV +NVNLP R+IPA+QEEGR RV +N+KV+A+FS KLFG N+V+KVPVPPNTA+  I+V +GRA++EPE RA+VWRIKR  GG E + TADV L PS   KAWSRPPIQ EFQVPMFTSSGV VRFL+VYDKSGY T RWVRYITRAG + +R
Sbjct:    1 MISAILIINRKGEIVISRFYRDDVTRAAADAFRLQVIASKETGSSAPIMLLDGNTFLYTRHLNLYLVAVTRGNVNPAMVFEFLYQKIRIFKAYFKRDFDEDTLRNNMTLILELMDETMDYGYPQILSIDVLRTYINLGTIRSLDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVSGKVIMKTLLSGMPDCKFGLNDKLIMERDA--NARGRQDRRPA-VALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRGRVTINLKVSADFSYKLFGSNIVVKVPVPPNTARCLIHVGSGRAKYEPEQRAIVWRIKRMIGGAEAVFTADVELTPSIRGKAWSRPPIQAEFQVPMFTSSGVQVRFLKVYDKSGYLTKRWVRYITRAGHYQIR 430          
BLAST of EWM25770.1 vs. NCBI_GenBank
Match: gi|219112401|ref|XP_002177952.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410837|gb|EEC50766.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 620.928 bits (1600), Expect = 0.000e+0
Identity = 280/433 (64.67%), Postives = 361/433 (83.37%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRN-RVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432
            MIS I ++NQKG+++++R YRDDV R+  D+FR +V+A+KETG++AP+K IEN +FLY RH ++Y VA+TRSN+NPALVFE+LF++++I KAY GE FDE+A+RN+ TL+YEL+DETMDFGYPQNCA++VLR YINLGT + + ++ EP+ LTSQITG IDWRR+GIR++KNEVYIDVLESVN+L+S+TGNVL ++V G + M   L+G PECKFGLNDKL+++++           R   V+IDDCTFHRCVRLG+FDADRTITFIPPDGEFELMRYRVT+N+NLPFR+IPA+QE   N +V++++KV ANFS +LF  +VVIK+PVP NT+KT I  S GRA++EPE +A+VWR+KRF G  + +I A+V LMP+  ++ WSRPPI VEFQVPMFT SGVHVRFLRVYDKSGY TNRWVRYIT+AGS+ +R
Sbjct:    1 MISMIMVLNQKGDIMISRQYRDDVGRAAADSFRLQVVAAKETGTEAPVKRIENCSFLYTRHLNMYFVALTRSNVNPALVFEYLFQLIKILKAYLGEEFDETAMRNNMTLIYELMDETMDFGYPQNCAVDVLRLYINLGTAKPQ-DEPEPSKLTSQITGAIDWRREGIRHKKNEVYIDVLESVNLLLSSTGNVLRNEVAGSVQMNTKLTGMPECKFGLNDKLVIEKDKED--------RKPSVDIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRIIPAVQESQNNTKVSIDLKVIANFSDQLFATHVVIKIPVPKNTSKTKIKHSFGRAKYEPEQQAIVWRVKRFAGKAQCIINAEVDLMPTVRSQPWSRPPINVEFQVPMFTGSGVHVRFLRVYDKSGYHTNRWVRYITKAGSYQIR 424          
BLAST of EWM25770.1 vs. NCBI_GenBank
Match: gi|1072224683|gb|OEU09432.1| (clathrin adaptor, mu subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 280/433 (64.67%), Postives = 362/433 (83.60%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEE-GRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432
            MIS I ++NQKG+++++R YRDDVSR+  D+FR +V+A+K TG++AP+  IEN +FLY RH +++ VAVTRSN+NPALVFE+L+++VRI K+Y G+ FDE+A+RN+ TL+YEL+DETMDFGYPQNCA++VL+ YINLG+V+A+ ++ EP+ LTSQITG IDWRR+GIR++KNEVYIDVLESVN+L+S+TG +L ++VTG + M   L+G PECKFGLNDKL++++E          +R  GVEIDDCTFHRCVRLG+FDADRTITFIPPDGE+ELM+YRVT+N+NLPFR+IP IQEE    ++++N+KV ANFS +LF  +VVIK+PVP NTAK  I  S GRA++EPE +A+VWR+KRFPG  E  I+ADV LMP+   K WSRPPI  EFQVPMFT+SGVHVRFLRVYDKSGY TNRWVRYIT+AG++ +R
Sbjct:    1 MISMIMILNQKGDIMISRQYRDDVSRAGADSFRLQVVATKNTGTEAPVVRIENNSFLYTRHLNMFFVAVTRSNVNPALVFEYLYQLVRILKSYLGDEFDENAMRNNMTLIYELMDETMDFGYPQNCAVDVLKLYINLGSVKAQ-DEPEPSQLTSQITGAIDWRREGIRHKKNEVYIDVLESVNLLLSSTGAILRNEVTGAVQMNTKLTGMPECKFGLNDKLVIEKEG---------QRKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEYELMKYRVTDNINLPFRIIPTIQEEQSLTKISINLKVIANFSDQLFATHVVIKIPVPKNTAKAKIKHSFGRAKYEPEQQAIVWRVKRFPGKAECHISADVDLMPTVRPKIWSRPPINCEFQVPMFTASGVHVRFLRVYDKSGYHTNRWVRYITKAGNYQIR 423          
BLAST of EWM25770.1 vs. NCBI_GenBank
Match: gi|397572964|gb|EJK48489.1| (hypothetical protein THAOC_32705 [Thalassiosira oceanica])

HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 277/432 (64.12%), Postives = 359/432 (83.10%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432
            MIS+I ++N +GE++++R YRDDVSR   D+FR +VIA+KE  SQ PIK IEN +FLY RH ++Y VA+T++N+NPALVFE+L++ +R+ KAY GE FDE+++RN+ TL+YEL+DETMDFGYPQNCA++VLR YINLG V+ + ++ EP  LT QITG IDWRR+GIR++KNEVYIDVLESVN+L+S+ GNVL S+VTG++ M   L+G PECKFGLNDKL++++ + G       R+++GVEIDDCTFHRCVRLG+FDADRTITFIPPDGEFELMRYRV +NVN+PFRLIPA+QEEG+ + ++N+KV ANFS KLF  +VVI+VPVP NT+K+ I  S GRA++EPE  A+VWRIK+FPG  E M++AD+ L+ +   K+W RPPI VEFQVPMFT+SGVHVRFLRVYDK+GY TNRWVRYIT+ G + ++
Sbjct:    1 MISSIMILNARGEIMISRQYRDDVSRVAADSFRIQVIAAKEASSQPPIKRIENCSFLYTRHLNMYFVALTKANVNPALVFEYLYQKIRVLKAYLGEDFDENSMRNNMTLIYELMDETMDFGYPQNCAVDVLRLYINLGDVKPQ-DEPEPAQLTKQITGAIDWRREGIRHKKNEVYIDVLESVNLLISSAGNVLRSEVTGRVQMNTKLTGMPECKFGLNDKLVIEKSSEG-------RKNSGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVNDNVNMPFRLIPAVQEEGQTKCSINLKVIANFSEKLFATHVVIRVPVPKNTSKSKIKNSFGRAKYEPEQNAIVWRIKKFPGKAECMLSADMELVRTVRPKSWERPPISVEFQVPMFTASGVHVRFLRVYDKAGYHTNRWVRYITKGGGYQIK 424          
BLAST of EWM25770.1 vs. NCBI_GenBank
Match: gi|223998210|ref|XP_002288778.1| (clathrin adaptor complex subunit [Thalassiosira pseudonana CCMP1335] >gi|220975886|gb|EED94214.1| clathrin adaptor complex subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 277/432 (64.12%), Postives = 355/432 (82.18%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432
            MIS I ++NQKGE++++R YRDDVSR   D+FR +VIA+KE  SQ PIK IEN +FLY RH ++Y VA+T+SN+NPALVFE+LF+ +R+ KAY GE FDE+++RN+ TL+YEL+DETMDFGYPQNCA++VLR YINLG V+ + ++ EP  LT QITG IDWRR+GIRY+KNEVYIDVLESVN+L+S++G+VL ++VTG++ M   L+G PECKFGLNDKL++++E++        R+   V I+DCTFHRCVRLG+FDADRTITFIPPDGEFELMRYRV +NVN PF+L PA+QEEG+ + ++N+K+ A FS KLF  +VV+K+PVP NT+KT I  S GRA++EPE  A+VWRIKRFPG  E M++AD+ L+ +   KAW RPPI VEFQVPMFT+SGVHVRFLRV+DKSGY TNRWVRYIT+AG + +R
Sbjct:    1 MISMIMVLNQKGEIMISRQYRDDVSRVAADSFRLQVIAAKEASSQPPIKRIENCSFLYTRHLNMYFVALTKSNVNPALVFEYLFQKIRVLKAYLGEEFDENSMRNNMTLIYELMDETMDFGYPQNCAVDVLRLYINLGNVKPQ-DEPEPEQLTKQITGAIDWRREGIRYKKNEVYIDVLESVNLLISSSGSVLRNEVTGRVQMNTKLTGMPECKFGLNDKLVIEKESSA------ARKKTLVNINDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVNDNVNRPFKLFPAVQEEGQTKCSINLKMVAEFSEKLFATHVVVKIPVPKNTSKTKIKNSFGRAKYEPEQNAIVWRIKRFPGKAECMLSADLELVRTVRPKAWERPPINVEFQVPMFTASGVHVRFLRVFDKSGYHTNRWVRYITKAGGYQIR 425          
BLAST of EWM25770.1 vs. NCBI_GenBank
Match: gi|1210517806|dbj|GAX23207.1| (AP-2 complex subunit mu-1 [Fistulifera solaris] >gi|1210530876|dbj|GAX10416.1| AP-2 complex subunit mu-1 [Fistulifera solaris])

HSP 1 Score: 603.979 bits (1556), Expect = 0.000e+0
Identity = 280/419 (66.83%), Postives = 349/419 (83.29%), Query Frame = 0
Query:   15 VVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGR-NRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432
            +++R YRDDV R+  D+FR +V+A+KETG+ APIK IEN +FLY RH ++Y VA+TRSN+NPALVFE+LF++V+I KAY GE FDE+A+RN+ TL+YEL+DETMDFGYPQNCA++VLR YINLG V+ + ++ EP+ LTSQITG IDWRR+GIR++KNEVYIDVLESVN+L+S+TG+VL ++V G + M   L+G PECKFGLNDKL++D++   K  G  T     VEIDDCTFHRCVRLG+FDADRTITFIPPDGEFELM YRVT+N+NLPFR+IPA+QEE    +V++NVKV A+FS +LF  +VVIK+PVP NT+K  I  S GRA++EPE  A+VWR+KRF G  E +ITADV LMP T  K WSRPPIQ+EFQVPMFT+SGVHVRFLRVYDKSGY TNRWVRYIT+AG++ +R
Sbjct:    1 MISRQYRDDVGRAAADSFRLQVVAAKETGTDAPIKRIENCSFLYTRHLNMYFVAMTRSNVNPALVFEYLFQLVKILKAYLGEEFDENAMRNNMTLIYELMDETMDFGYPQNCAVDVLRLYINLGNVKPQ-DEPEPSQLTSQITGAIDWRREGIRHKKNEVYIDVLESVNLLLSSTGSVLRNEVQGAVQMNTKLTGMPECKFGLNDKLVIDKD---KGDGKQT-----VEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMHYRVTDNINLPFRVIPAVQEENNMTKVSINVKVIASFSDQLFATHVVIKIPVPKNTSKAKIKNSFGRAKYEPEQNAIVWRVKRFAGKAECIITADVDLMPMTRPKPWSRPPIQLEFQVPMFTASGVHVRFLRVYDKSGYHTNRWVRYITKAGNYQIR 410          
BLAST of EWM25770.1 vs. NCBI_GenBank
Match: gi|635369155|emb|CCI42630.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 600.897 bits (1548), Expect = 0.000e+0
Identity = 272/435 (62.53%), Postives = 351/435 (80.69%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEME--QQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDR-EAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432
            MISA+FL+ QKGE+V++R YRDDVSR   DTFR +VIA+KETGS  PIK I+  +FLY RH +LYLVAVTR+N+N ALVF+FL+++  IFK YFG+ + E ++R++FTLVYELLDET+D+GYPQNC+I+VL+ YINLG++ +       +P+ LTSQITG IDWRR+GI+Y++NEVY+DV ESVN+LMS+ G VL ++V GQ+VMK  L+G PECK GLNDKLIM + +AAG       R +  VEIDDCTFHRCVRLG+FDADRTITFIPPDGEFELM+YRVTENVNLPF+++PA QE+G  R++V +K+ A FS +LF  N+VIK+P PPNTA+  IN   GRA+ EPE+ A+VWR+++F G  E M+ A+V ++ ST  K WSRPPIQ+EFQVPMFTSSG+HVRFL+V++K  YQT +WVRY+TRAG + +R
Sbjct:    1 MISALFLLGQKGEIVLHRFYRDDVSRRAADTFRMQVIAAKETGSLPPIKHIDGCSFLYTRHENLYLVAVTRANINTALVFQFLYQLNGIFKEYFGKKYSEESIRDNFTLVYELLDETVDYGYPQNCSIDVLKMYINLGSLSSSDGPLATQPSQLTSQITGAIDWRREGIKYKRNEVYLDVFESVNLLMSSNGTVLRNEVAGQVVMKTSLTGMPECKLGLNDKLIMQKGDAAGSKIPGQKRATRDVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMKYRVTENVNLPFKIMPAYQEQGTTRLSVTLKIAATFSPRLFATNLVIKIPTPPNTARARINAPIGRAKHEPENHAIVWRVRKFQGKLERMLDAEVEMLKSTREKVWSRPPIQIEFQVPMFTSSGLHVRFLKVFEKGSYQTTKWVRYVTRAGQYQLR 435          
BLAST of EWM25770.1 vs. NCBI_GenBank
Match: gi|325189003|emb|CCA23532.1| (AP2 complex subunit mu putative [Albugo laibachii Nc14])

HSP 1 Score: 597.43 bits (1539), Expect = 0.000e+0
Identity = 271/435 (62.30%), Postives = 348/435 (80.00%), Query Frame = 0
Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEME--QQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDR-EAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432
            MISA+FL+ QKGE+V++R YRDDVSR   DTFR +VIA+KETGS  P+K I+  +FLY RH +LYLVAVTR+N+N ALVF+FL+++  IFK YFG+ + E ++R++FTLVYELLDET+D+GYPQNC+I+VL+ YINLG++         +P+ LTSQITG IDWRR+GI+Y++NEVY+DV ESVN+LMS+ G VL ++V GQIVMK  L+G PECK GLNDKLIM + + AG       R +  VEIDDCTFHRCVRLG+FDADRTITFIPPDGEFELM+YRVTENVNLPF+++PA QE G  R++V +K+ A FS +LF  N+VIK+P PPNTA+  IN   GRA+ EPE+ A+VWR+++F G  E M+ A+V ++ ST  K WSRPPIQ+EFQVPMFTSSG+HVRFL+V++K  YQT +WVRY+TRAG + +R
Sbjct:    1 MISALFLLGQKGEIVLHRFYRDDVSRRAADTFRMQVIAAKETGSLPPVKHIDGCSFLYTRHENLYLVAVTRANINTALVFQFLYQLNGIFKEYFGKKYSEESIRDNFTLVYELLDETVDYGYPQNCSIDVLKMYINLGSLSNSDGPLSTQPSQLTSQITGAIDWRREGIKYKRNEVYLDVFESVNLLMSSNGTVLRNEVAGQIVMKTSLTGMPECKLGLNDKLIMQKGDGAGSKIPGQKRATRDVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMKYRVTENVNLPFKIMPAYQESGTTRLSVTLKIAATFSPRLFATNLVIKIPTPPNTARARINAPIGRAKHEPENHAIVWRVRKFQGKLERMLDAEVEMVKSTREKVWSRPPIQIEFQVPMFTSSGLHVRFLKVFEKGSYQTTKWVRYVTRAGQYQLR 435          
The following BLAST results are available for this feature:
BLAST of EWM25770.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107635|gb|EWM25770.1|0.000e+0100.00ap-2 complex subunit mu [Nannochloropsis gaditana][more]
gi|585107634|gb|EWM25769.1|0.000e+0100.00ap-2 complex subunit mu [Nannochloropsis gaditana][more]
gi|299473380|emb|CBN77778.1|0.000e+068.59Clathrin assembly complex, medium subunit [Ectocar... [more]
gi|219112401|ref|XP_002177952.1|0.000e+064.67predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072224683|gb|OEU09432.1|0.000e+064.67clathrin adaptor, mu subunit [Fragilariopsis cylin... [more]
gi|397572964|gb|EJK48489.1|0.000e+064.12hypothetical protein THAOC_32705 [Thalassiosira oc... [more]
gi|223998210|ref|XP_002288778.1|0.000e+064.12clathrin adaptor complex subunit [Thalassiosira ps... [more]
gi|1210517806|dbj|GAX23207.1|0.000e+066.83AP-2 complex subunit mu-1 [Fistulifera solaris] >g... [more]
gi|635369155|emb|CCI42630.1|0.000e+062.53unnamed protein product [Albugo candida][more]
gi|325189003|emb|CCA23532.1|0.000e+062.30AP2 complex subunit mu putative [Albugo laibachii ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4922rna4922Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications