rna4605, rna4605 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4605
Unique Name	rna4605
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2373
Alignment location	CM002463.1:1017690..1020318 -

Link to JBrowse

Properties


Property Name	Value
Product	activating signal cointegrator 1
Orig transcript id	gnl\|cribi\|Naga_100014g83.9326.mrna
Orig protein id	gnl\|cribi\|Naga_100014g83.9326
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:1017690..1020318 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g83	gene4442	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26149.1	cds4593	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4605	rna4605-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:1017690..1020318-
coding sequence from alignment at CM002463.1:1017690..1020318-

mRNA sequence

>rna4605 ID=rna4605|Name=rna4605|organism=Nannochloropsis gaditana|type=mRNA|length=2373bp
TTGCTCCTAACCCTTTGCTCACACGCGGTAACACGCGCAAGCAGCTAGAT
GCCTTGCCGTTCTGTTGATGAGAATATTCACGACTATGGTTATGTTCATA
TCTACAGTTCTCAAAATGAGACAAATGGACGTTTTGATACTGGCTGGAGG
GCCTTGGTAAATCCAAACGACTCACGAGCTTCTTCGATTACAAATAGACA
GTGTTTGTCACCACTTTAATGCTTCGACGGCCCCATTACTCGGCTGTACT
CTGGTCTGACACGATTTTAAATCGCTGCTCTGCTCCTTCCCTCTTCCAAT
TCGCTGTTGTCCGAGGTAGCCACCGTACTCTTGGCACTGCCAGCGCACCC
GCTCTAGCTGCTCGTCTGGCGCTCAACCATTCTACACACGTAGAAGGCCT
GCTACCCGTGCTTCGCCGTGTAATTGCTGCCTACGGCCCGCCAGAAATTC
ATACTGTAGTTCCTGGGCGTTTGGCTGTTACCCGTGGGAAGGCAAATCAC
TTTCGAATACGAATCAGTGCCCCCACTCCACAGGGATACAAGGCGTTAGT
GCGACGAGGACGGACGGTGCAAGAAGTTTTCTTCACTGGATCTATCGACC
AGACAGCTTTGCAGCGAGCCTTAGACGTGGCCACGCAAAAGGAGCTAGGG
CGCTTATAAGTGACCACACCTTAATCAAGATCCTTCCCGGAGTTAGGGGT
TCGCACAGTGAGCGATCTAATGGCAGGAGTCGGTAAGATTGAGGCCTGGG
TCCGAGAAAATGTAGCACGTCTGCTCTGCATGGACGTGAATGACTCGGAG
GAGCTGGCGGCGTGTGTGCTGGCCATGCCCTGCGCCACTGACAAAGAAGA
GAGGGAGATCAAGCAGCTAATAAAAGAGTTTTTGGGAAGCTCTGCGGAAG
TTGAAACATTTTCCACAGAGGTGGTGCAGAGAAGGAGACGTCCAGGGGAA
GGAGTTCCCGTCACGGAACGGGCCGACGAAGCGAAGGGGGGAACGCAAGC
AGGCAGCGACATAGATCGCGGAGGGAAAAGTGGTAAACGCCAAAATGCTA
AGGAAGAAAGGGGAGAAATGATGAAGCCTCCTGGGAAGGCTGTGCGTGAC
ACGACCGCGCAGGAAGAGGCGGAGGATGATTTTTGGGGCACTCTCTCGTC
TACTTCACTTCATCGTTCCGATGCTGCTTCTGCCTGTGGTGGGCGTCAAG
ACAACAGTACGTCAGGCAAAAGGCAAGGTCGTATGGAAGACAAGGCAAAA
TCACAGAGCAGGGAAAGCGAAAGGGTGAGAAAGGGAAAAAATCAAGGAGG
GGGAGGACGAGCAGTCCCTGCTGCTAGCGGCGGAGGCAGGGATGTGGTCT
GCAGGCAGCCCCTAACTGCTTCTCCTACTGACGATTTCGCCTATCAGCCT
TCAATCATGGCCCGTCCCGCACCTTTTCCATGTCGCTGCATGGGTACTTG
TCACACCCCTCTCGGGAATTGCTTGCGGTGCGGTAAAGTGATATGCTCCA
AGGAGGGATGGACAATCTGCTCGTTTTGTAAGACAGACCTGACTAATCCC
GCTAATGGTTATCGCTCTCGTCCTCCGATCCTTTTGCGTTCGCTCGCCGC
AAGGGGCAAGCTAGCGGTGGAAAATGAGAGTAAGGAAGTGAGGGAGGACG
TGAAGGACGGCAGTGAACGCGCCGACGAGATGCGGGATCGGTTGTTGGTG
TTCGATTTGAGCATGGCCGAGCGCACAAAAGTCTACGACGACCAAGCGGA
TTACTTCCCGGGAACGTCGGGGAACATGGCCTGGATGGACGAAAAAGAGT
GTGAGGAGGAGGAACGGCGGGAGGAAGAGAGGAGAGAGAAAGCGAGCGGA
AGGAGGGGCCCCATGGAGTTGAGCATAGATCTGGCAGGTAGGAGGGTTTT
CCTACAAGATAGTGGGATCGATACTGGCAAAGAGGAGTCGGACGCAGGCA
GGATTGGTACAAATGAAGCGGCGGAAGAAGTTGCCAGATTAGCGTGGGAA
TTGAGTACGAGCGGGACGTTGGAGGGAAACTACGATAGGGAAGGAGCAAG
GAAGGGAAAATCAGGGGTGTCGAGGCTGAGTGGGCGAGCACGAGAGGTTT
TTGAGGGTTTGCACGCGCATTTTGGGCGCATCAAATCTAGTAATTATGCG
AAGGAAAGAGAAAAGAGGCAAGGGCACCCGGAAGGGGAGGATGCTGAACC
GAAAGCCGAAACTTTTTCCTCGCGCAGCCGCGTACAGACGACGTCTGATA
GATTACATGATGATGAGGAGATGGAAATCGAGGACTTGTAACTGCAACTA
ACGGAAGGATACAAAAAGGGTATGTCTACAACGAGACTCTCTAGGAAAAG
CCAATTTGTGCGATAGTATCTGA

protein sequence of rna4605

>rna4605-protein ID=rna4605-protein|Name=rna4605|organism=Nannochloropsis gaditana|type=polypeptide|length=523bp
MAGVGKIEAWVRENVARLLCMDVNDSEELAACVLAMPCATDKEEREIKQL
IKEFLGSSAEVETFSTEVVQRRRRPGEGVPVTERADEAKGGTQAGSDIDR
GGKSGKRQNAKEERGEMMKPPGKAVRDTTAQEEAEDDFWGTLSSTSLHRS
DAASACGGRQDNSTSGKRQGRMEDKAKSQSRESERVRKGKNQGGGGRAVP
AASGGGRDVVCRQPLTASPTDDFAYQPSIMARPAPFPCRCMGTCHTPLGN
CLRCGKVICSKEGWTICSFCKTDLTNPANGYRSRPPILLRSLAARGKLAV
ENESKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTS
GNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVFLQDSGI
DTGKEESDAGRIGTNEAAEEVARLAWELSTSGTLEGNYDREGARKGKSGV
SRLSGRAREVFEGLHAHFGRIKSSNYAKEREKRQGHPEGEDAEPKAETFS
SRSRVQTTSDRLHDDEEMEIEDL

mRNA from alignment at CM002463.1:1017690..1020318-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4605 ID=rna4605|Name=rna4605|organism=Nannochloropsis gaditana|type=mRNA|length=2629bp|location=Sequence derived from alignment at CM002463.1:1017690..1020318- (Nannochloropsis gaditana)
TTGCTCCTAACCCTTTGCTCACACGCGGTAACACGCGCAAGCAGCTAGAT
GCCTTGCCGTTCTGTTGATGAGAATATTCACGACTATGGTTATGTTCATA
TCTACAGTTCTCAAAATGAGACAAATGGACGTTTTGATACTGGCTGGAGG
GCCTTGGTAAATCCAAACGACTCACGAGCTTCTTCGATTACAAATAGACA
GTGTTTGTCACCACTTTAATGCTTCGACGGCCCCATTACTCGGCTGTACT
CTGGTCTGACACGATTTTAAATCGCTGCTCTGCTCCTTCCCTCTTCCAAT
TCGCTGTTGTCCGAGGTAGCCACCGTACTCTTGGCACTGCCAGCGCACCC
GCTCTAGCTGCTCGTCTGGCGCTCAACCATTCTACACACGTAGAAGGCCT
GCTACCCGTGCTTCGCCGTGTAATTGCTGCCTACGGCCCGCCAGAAATTC
ATACTGTAGTTCCTGGGCGTTTGGCTGTTACCCGTGGGAAGGCAAATCAC
TTTCGAATACGAATCAGTGCCCCCACTCCACAGGGATACAAGGCGTTAGT
GCGACGAGGACGGACGGTGCAAGAAGTTTTCTTCACTGGATCTATCGACC
AGACAGCTTTGCAGCGAGCCTTAGACGTGGCCACGCAAAAGGAGCTAGGG
CGCTTATAAGTGACCACACCTTAATCAAGATCCTTCCCGGAGTTAGGGGT
TCGGTAAGGCTCGATTCATTTTTGGTCCCAAGAGTGGTGCGCAGTATAGG
GGGTATTTGCATCGATATAGAAGTCTTGAAGAAAACGTCAACGAGAGTAT
AATGTCACTGGCCTGGAAGGAGAGATAGACTTCTCAGCCAAACTCGTTCG
GTGTCACCCTTGTTCAGCCCTCCTCATGACTACCGCCTCAAATAATCCCT
GCTATCTATCTCTCAGTCTCCAGGGCCTGACCATTAAGCACTCAAACATC
ACTTCATAGCACAGTGAGCGATCTAATGGCAGGAGTCGGTAAGATTGAGG
CCTGGGTCCGAGAAAATGTAGCACGTCTGCTCTGCATGGACGTGAATGAC
TCGGAGGAGCTGGCGGCGTGTGTGCTGGCCATGCCCTGCGCCACTGACAA
AGAAGAGAGGGAGATCAAGCAGCTAATAAAAGAGTTTTTGGGAAGCTCTG
CGGAAGTTGAAACATTTTCCACAGAGGTGGTGCAGAGAAGGAGACGTCCA
GGGGAAGGAGTTCCCGTCACGGAACGGGCCGACGAAGCGAAGGGGGGAAC
GCAAGCAGGCAGCGACATAGATCGCGGAGGGAAAAGTGGTAAACGCCAAA
ATGCTAAGGAAGAAAGGGGAGAAATGATGAAGCCTCCTGGGAAGGCTGTG
CGTGACACGACCGCGCAGGAAGAGGCGGAGGATGATTTTTGGGGCACTCT
CTCGTCTACTTCACTTCATCGTTCCGATGCTGCTTCTGCCTGTGGTGGGC
GTCAAGACAACAGTACGTCAGGCAAAAGGCAAGGTCGTATGGAAGACAAG
GCAAAATCACAGAGCAGGGAAAGCGAAAGGGTGAGAAAGGGAAAAAATCA
AGGAGGGGGAGGACGAGCAGTCCCTGCTGCTAGCGGCGGAGGCAGGGATG
TGGTCTGCAGGCAGCCCCTAACTGCTTCTCCTACTGACGATTTCGCCTAT
CAGCCTTCAATCATGGCCCGTCCCGCACCTTTTCCATGTCGCTGCATGGG
TACTTGTCACACCCCTCTCGGGAATTGCTTGCGGTGCGGTAAAGTGATAT
GCTCCAAGGAGGGATGGACAATCTGCTCGTTTTGTAAGACAGACCTGACT
AATCCCGCTAATGGTTATCGCTCTCGTCCTCCGATCCTTTTGCGTTCGCT
CGCCGCAAGGGGCAAGCTAGCGGTGGAAAATGAGAGTAAGGAAGTGAGGG
AGGACGTGAAGGACGGCAGTGAACGCGCCGACGAGATGCGGGATCGGTTG
TTGGTGTTCGATTTGAGCATGGCCGAGCGCACAAAAGTCTACGACGACCA
AGCGGATTACTTCCCGGGAACGTCGGGGAACATGGCCTGGATGGACGAAA
AAGAGTGTGAGGAGGAGGAACGGCGGGAGGAAGAGAGGAGAGAGAAAGCG
AGCGGAAGGAGGGGCCCCATGGAGTTGAGCATAGATCTGGCAGGTAGGAG
GGTTTTCCTACAAGATAGTGGGATCGATACTGGCAAAGAGGAGTCGGACG
CAGGCAGGATTGGTACAAATGAAGCGGCGGAAGAAGTTGCCAGATTAGCG
TGGGAATTGAGTACGAGCGGGACGTTGGAGGGAAACTACGATAGGGAAGG
AGCAAGGAAGGGAAAATCAGGGGTGTCGAGGCTGAGTGGGCGAGCACGAG
AGGTTTTTGAGGGTTTGCACGCGCATTTTGGGCGCATCAAATCTAGTAAT
TATGCGAAGGAAAGAGAAAAGAGGCAAGGGCACCCGGAAGGGGAGGATGC
TGAACCGAAAGCCGAAACTTTTTCCTCGCGCAGCCGCGTACAGACGACGT
CTGATAGATTACATGATGATGAGGAGATGGAAATCGAGGACTTGTAACTG
CAACTAACGGAAGGATACAAAAAGGGTATGTCTACAACGAGACTCTCTAG
GAAAAGCCAATTTGTGCGATAGTATCTGA

Coding sequence (CDS) from alignment at CM002463.1:1017690..1020318-

>rna4605 ID=rna4605|Name=rna4605|organism=Nannochloropsis gaditana|type=CDS|length=1572bp|location=Sequence derived from alignment at CM002463.1:1017690..1020318- (Nannochloropsis gaditana)
ATGGCAGGAGTCGGTAAGATTGAGGCCTGGGTCCGAGAAAATGTAGCACG
TCTGCTCTGCATGGACGTGAATGACTCGGAGGAGCTGGCGGCGTGTGTGC
TGGCCATGCCCTGCGCCACTGACAAAGAAGAGAGGGAGATCAAGCAGCTA
ATAAAAGAGTTTTTGGGAAGCTCTGCGGAAGTTGAAACATTTTCCACAGA
GGTGGTGCAGAGAAGGAGACGTCCAGGGGAAGGAGTTCCCGTCACGGAAC
GGGCCGACGAAGCGAAGGGGGGAACGCAAGCAGGCAGCGACATAGATCGC
GGAGGGAAAAGTGGTAAACGCCAAAATGCTAAGGAAGAAAGGGGAGAAAT
GATGAAGCCTCCTGGGAAGGCTGTGCGTGACACGACCGCGCAGGAAGAGG
CGGAGGATGATTTTTGGGGCACTCTCTCGTCTACTTCACTTCATCGTTCC
GATGCTGCTTCTGCCTGTGGTGGGCGTCAAGACAACAGTACGTCAGGCAA
AAGGCAAGGTCGTATGGAAGACAAGGCAAAATCACAGAGCAGGGAAAGCG
AAAGGGTGAGAAAGGGAAAAAATCAAGGAGGGGGAGGACGAGCAGTCCCT
GCTGCTAGCGGCGGAGGCAGGGATGTGGTCTGCAGGCAGCCCCTAACTGC
TTCTCCTACTGACGATTTCGCCTATCAGCCTTCAATCATGGCCCGTCCCG
CACCTTTTCCATGTCGCTGCATGGGTACTTGTCACACCCCTCTCGGGAAT
TGCTTGCGGTGCGGTAAAGTGATATGCTCCAAGGAGGGATGGACAATCTG
CTCGTTTTGTAAGACAGACCTGACTAATCCCGCTAATGGTTATCGCTCTC
GTCCTCCGATCCTTTTGCGTTCGCTCGCCGCAAGGGGCAAGCTAGCGGTG
GAAAATGAGAGTAAGGAAGTGAGGGAGGACGTGAAGGACGGCAGTGAACG
CGCCGACGAGATGCGGGATCGGTTGTTGGTGTTCGATTTGAGCATGGCCG
AGCGCACAAAAGTCTACGACGACCAAGCGGATTACTTCCCGGGAACGTCG
GGGAACATGGCCTGGATGGACGAAAAAGAGTGTGAGGAGGAGGAACGGCG
GGAGGAAGAGAGGAGAGAGAAAGCGAGCGGAAGGAGGGGCCCCATGGAGT
TGAGCATAGATCTGGCAGGTAGGAGGGTTTTCCTACAAGATAGTGGGATC
GATACTGGCAAAGAGGAGTCGGACGCAGGCAGGATTGGTACAAATGAAGC
GGCGGAAGAAGTTGCCAGATTAGCGTGGGAATTGAGTACGAGCGGGACGT
TGGAGGGAAACTACGATAGGGAAGGAGCAAGGAAGGGAAAATCAGGGGTG
TCGAGGCTGAGTGGGCGAGCACGAGAGGTTTTTGAGGGTTTGCACGCGCA
TTTTGGGCGCATCAAATCTAGTAATTATGCGAAGGAAAGAGAAAAGAGGC
AAGGGCACCCGGAAGGGGAGGATGCTGAACCGAAAGCCGAAACTTTTTCC
TCGCGCAGCCGCGTACAGACGACGTCTGATAGATTACATGATGATGAGGA
GATGGAAATCGAGGACTTGTAA

Synonyms

Publications