EWM26149.1, cds4593 (CDS) Nannochloropsis gaditana

Overview
NameEWM26149.1
Unique Namecds4593
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1017772..1019343 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26149.1
Productactivating signal cointegrator 1
Orig transcript idgnl|cribi|Naga_100014g83.9326.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1017772..1019343 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005737cytoplasm
GO:0005856cytoskeleton
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005102signaling receptor binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR009349Znf_C2HC5
Homology
BLAST of EWM26149.1 vs. NCBI_GenBank
Match: gi|585108142|gb|EWM26148.1| (activating signal cointegrator 1 [Nannochloropsis gaditana] >gi|585108143|gb|EWM26149.1| activating signal cointegrator 1 [Nannochloropsis gaditana])

HSP 1 Score: 1064.29 bits (2751), Expect = 0.000e+0
Identity = 523/523 (100.00%), Postives = 523/523 (100.00%), Query Frame = 0
Query:    1 MAGVGKIEAWVRENVARLLCMDVNDSEELAACVLAMPCATDKEEREIKQLIKEFLGSSAEVETFSTEVVQRRRRPGEGVPVTERADEAKGGTQAGSDIDRGGKSGKRQNAKEERGEMMKPPGKAVRDTTAQEEAEDDFWGTLSSTSLHRSDAASACGGRQDNSTSGKRQGRMEDKAKSQSRESERVRKGKNQGGGGRAVPAASGGGRDVVCRQPLTASPTDDFAYQPSIMARPAPFPCRCMGTCHTPLGNCLRCGKVICSKEGWTICSFCKTDLTNPANGYRSRPPILLRSLAARGKLAVENESKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTSGNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVFLQDSGIDTGKEESDAGRIGTNEAAEEVARLAWELSTSGTLEGNYDREGARKGKSGVSRLSGRAREVFEGLHAHFGRIKSSNYAKEREKRQGHPEGEDAEPKAETFSSRSRVQTTSDRLHDDEEMEIEDL 523
            MAGVGKIEAWVRENVARLLCMDVNDSEELAACVLAMPCATDKEEREIKQLIKEFLGSSAEVETFSTEVVQRRRRPGEGVPVTERADEAKGGTQAGSDIDRGGKSGKRQNAKEERGEMMKPPGKAVRDTTAQEEAEDDFWGTLSSTSLHRSDAASACGGRQDNSTSGKRQGRMEDKAKSQSRESERVRKGKNQGGGGRAVPAASGGGRDVVCRQPLTASPTDDFAYQPSIMARPAPFPCRCMGTCHTPLGNCLRCGKVICSKEGWTICSFCKTDLTNPANGYRSRPPILLRSLAARGKLAVENESKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTSGNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVFLQDSGIDTGKEESDAGRIGTNEAAEEVARLAWELSTSGTLEGNYDREGARKGKSGVSRLSGRAREVFEGLHAHFGRIKSSNYAKEREKRQGHPEGEDAEPKAETFSSRSRVQTTSDRLHDDEEMEIEDL
Sbjct:    1 MAGVGKIEAWVRENVARLLCMDVNDSEELAACVLAMPCATDKEEREIKQLIKEFLGSSAEVETFSTEVVQRRRRPGEGVPVTERADEAKGGTQAGSDIDRGGKSGKRQNAKEERGEMMKPPGKAVRDTTAQEEAEDDFWGTLSSTSLHRSDAASACGGRQDNSTSGKRQGRMEDKAKSQSRESERVRKGKNQGGGGRAVPAASGGGRDVVCRQPLTASPTDDFAYQPSIMARPAPFPCRCMGTCHTPLGNCLRCGKVICSKEGWTICSFCKTDLTNPANGYRSRPPILLRSLAARGKLAVENESKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTSGNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVFLQDSGIDTGKEESDAGRIGTNEAAEEVARLAWELSTSGTLEGNYDREGARKGKSGVSRLSGRAREVFEGLHAHFGRIKSSNYAKEREKRQGHPEGEDAEPKAETFSSRSRVQTTSDRLHDDEEMEIEDL 523          
BLAST of EWM26149.1 vs. NCBI_GenBank
Match: gi|156399329|ref|XP_001638454.1| (predicted protein [Nematostella vectensis] >gi|156225575|gb|EDO46391.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 102.449 bits (254), Expect = 1.456e-19
Identity = 68/208 (32.69%), Postives = 103/208 (49.52%), Query Frame = 0
Query:  233 PAPFPCRCMGTCHTPLGNCLRCGKVICSKEGWTICSFCKTDLTNPANGYRSRPPILLRSLAARGKLAVENESKEVREDVK-------------DGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTSGNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVFLQDSGIDTGKEESD-----AGRIGTNEAAEEVA 422
            P   PC C+G  H  + NC  CG+++C +EG   C FC   + +     R+   I+ R      KL  +  S+E  E+VK              G ++A   +++LL +D +   RTKV DD+ DYF  T GN  W+ +KE E+   +EEE R K  G R  M++++D AGRRV  ++S  D   ++ D     +G   T    E V+
Sbjct:  120 PGRHPCECLGQKHGLVNNCTSCGRIVCDQEGAGPCYFCGALVCS-----RAEQEIIARESKKSAKLLKQLMSQEFSEEVKSQGRMGTSNGKDLQGLDKAIAHKNKLLEYDKTSVCRTKVIDDECDYF-STDGN-KWLSKKEKEQLTVKEEELRAKRHGSRRDMKITLDFAGRRVVEENSTFDMYGQDPDLPVLASGYYSTQSNKENVS 320          
BLAST of EWM26149.1 vs. NCBI_GenBank
Match: gi|703112|gb|AAC41738.1| (thyroid receptor interactor, partial [Homo sapiens])

HSP 1 Score: 97.8265 bits (242), Expect = 3.904e-19
Identity = 58/181 (32.04%), Postives = 95/181 (52.49%), Query Frame = 0
Query:  233 PAPFPCRCMGTCHTPLGNCLRCGKVICSKEGWTICSFCKT---------DLTNPANGYRSRPPILLRSLAARGKLAVENE----SKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTSGNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVFLQDSGI 400
            P   PC C+G  H  + NCL CG+++C +EG   C FC T          L   +N  +     L+  +   GK+ +  +     +E+R  +K G E+A + +D+LL FD +   RT+V DD++DYF   S    W+ + E E  ++REEE RE     R   +++ID AGR++  +++ +
Sbjct:   42 PGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKVDISTKDLLPHQELR--IKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQ--WLSKLERETLQKREEELRELRHASRLSKKVTIDFAGRKILEEENSL 218          
BLAST of EWM26149.1 vs. NCBI_GenBank
Match: gi|6013191|gb|AAF01278.1| (activating signal cointegrator 1 [Homo sapiens])

HSP 1 Score: 99.3673 bits (246), Expect = 2.029e-18
Identity = 59/184 (32.07%), Postives = 97/184 (52.72%), Query Frame = 0
Query:  230 MARPAPFPCRCMGTCHTPLGNCLRCGKVICSKEGWTICSFCKT---------DLTNPANGYRSRPPILLRSLAARGKLAVENE----SKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTSGNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVFLQDSGI 400
            +A P   PC C+G  H  + NCL CG+++C +EG   C FC T          L   +N  +     L+  +   GK+ +  +     +E+R  +K G E+A + +D+LL FD +   RT+V DD++DYF   S    W+ + E E  ++REEE RE     R   +++ID AGR++  +++ +
Sbjct:  163 VALPGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKVDISTKDLLPHQELR--IKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQ--WLSKLERETLQKREEELRELRHASRLSKKVTIDFAGRKILEEENSL 342          
BLAST of EWM26149.1 vs. NCBI_GenBank
Match: gi|1160089726|ref|XP_020381620.1| (activating signal cointegrator 1 isoform X2 [Rhincodon typus])

HSP 1 Score: 99.3673 bits (246), Expect = 2.376e-18
Identity = 60/186 (32.26%), Postives = 88/186 (47.31%), Query Frame = 0
Query:  233 PAPFPCRCMGTCHTPLGNCLRCGKVICSKEGWTICSFC-------------------KTDLTNPANGYRSRPPILLRSLAARGKLAVENESKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTSGNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVFLQDSG 399
            P   PC C+G  H  + NCL CG+++C +EG   C FC                      L     G    P +  R L    ++A           +K G E+A + +D+LL +D + A RT+V DD++DYF   S    W+ ++E E   +REEE RE     R   +++ID AGRR+ L+D G
Sbjct:  177 PGRHPCECLGQTHQLINNCLSCGRIVCMQEGSGPCLFCGALVCTKEEQEILVRDSNKSQKLRKKLMGTTGNPDVFERDLLPHQEMA-----------LKAGLEKAIKHKDKLLEYDKTSARRTQVIDDESDYFAADSNQ--WLSKQEREALRKREEELRELRHASRRTKQITIDFAGRRI-LEDQG 348          
BLAST of EWM26149.1 vs. NCBI_GenBank
Match: gi|817345942|ref|XP_012298440.1| (activating signal cointegrator 1 isoform X3 [Aotus nancymaae])

HSP 1 Score: 98.5969 bits (244), Expect = 2.876e-18
Identity = 59/181 (32.60%), Postives = 95/181 (52.49%), Query Frame = 0
Query:  233 PAPFPCRCMGTCHTPLGNCLRCGKVICSKEGWTICSFCKT---------DLTNPANGYRSRPPILLRSLAARGKLAVENE----SKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTSGNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVFLQDSGI 400
            P   PC C+G  H  + NCL CG+++C +EG   C FC T          L   +N  +     L+  +   GK+ V  +     +E+R  +K G E+A + +D+LL FD +   RT+V DD++DYF   S    W+ + E E  ++REEE RE     R   +++ID AGR++  +++ +
Sbjct:  166 PGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQRLLKKLMSGVENSGKMDVSTKDLLPHQELR--IKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQ--WLSKLERETLQKREEELRELRHASRLSKKVTIDFAGRKILEEENSL 342          
BLAST of EWM26149.1 vs. NCBI_GenBank
Match: gi|1176062328|ref|XP_020632042.1| (activating signal cointegrator 1-like [Orbicella faveolata])

HSP 1 Score: 98.2117 bits (243), Expect = 4.055e-18
Identity = 60/187 (32.09%), Postives = 96/187 (51.34%), Query Frame = 0
Query:  233 PAPFPCRCMGTCHTPLGNCLRCGKVICSKEGWTICSFCKTDLTNPANGYRSRPPILLRSLAARGKLAVENESKEVREDV---------KDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTSGNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVFLQDSGIDTGKEESDAG 410
            P   PC C+G  H+ + NC+ CG+++C +EG   C FC   +       +    IL R+     KL  +  ++ +  D           +G ++A   ++RL+ +D S   RTKV DD+ DYF   S    W+ +KE +  +++E+E REK  G R  M++++D AGR+V      ID G+ E D G
Sbjct:  127 PGRHPCECLGQKHSLVNNCIECGRIVCMQEGSGPCFFCGALVCT-----KEEQEILARNSKKSQKLYQKLLTQTIESDTGAKAETSTADEGLQKAIAHKNRLIEYDKSGVRRTKVIDDECDYF--ASDTNRWLSKKERDALKKKEDELREKRHGSRREMKVTLDFAGRKV------IDEGETEVDYG 300          
BLAST of EWM26149.1 vs. NCBI_GenBank
Match: gi|1005459700|ref|XP_015766920.1| (PREDICTED: activating signal cointegrator 1-like [Acropora digitifera])

HSP 1 Score: 97.8265 bits (242), Expect = 4.879e-18
Identity = 59/183 (32.24%), Postives = 91/183 (49.73%), Query Frame = 0
Query:  233 PAPFPCRCMGTCHTPLGNCLRCGKVICSKEGWTICSF-----CKTDLTNPANGYRSRPPILLRSLAARGKLAVENESKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTSGNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVFLQDSGIDTGKEESDAG 410
            P   PC C+G  H  + NC+ CG+++C +EG   C F     C T+          +   L   L  R   ++E+ S+E       G + A   +++L+ FD S   RTKV DD+ DYF   S    W+ ++E +   ++EE+ REK  G R  M++++D AGRRV  +   +D   E   AG
Sbjct:  129 PGRHPCECLGQKHQLINNCIECGRIVCMQEGSGPCYFCGALVCSTEEKEILAQKSKKSQKLYEKLLTR---SIEDASEETLSVADKGLQEAIAHKNKLIEFDKSGVRRTKVIDDECDYFASDSNR--WLSKRERDTLRKKEEDLREKRHGSRRQMKVTLDFAGRRVIDEKEVLDYDTESDVAG 306          
BLAST of EWM26149.1 vs. NCBI_GenBank
Match: gi|1214032968|ref|XP_021569417.1| (activating signal cointegrator 1 isoform X2 [Carlito syrichta])

HSP 1 Score: 97.4413 bits (241), Expect = 6.919e-18
Identity = 58/175 (33.14%), Postives = 90/175 (51.43%), Query Frame = 0
Query:  233 PAPFPCRCMGTCHTPLGNCLRCGKVICSKEGWTICSFCKT---------DLTNPANGYRSRPPILLRSLAARGKLAVENE----SKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTSGNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVF 394
            P   PC C+G  H  + NCL CG+++C +EG   C FC T          L   +N  +     L+  +   GK+ +  +     +E+R  +K G E+A + +D+LL FD +   RT+V DD++DYF   S    W+ + E E  ++REEE RE     R   +++ID AGR + 
Sbjct:   88 PGRHPCDCLGQKHKLINNCLNCGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGMENSGKMEISTKDLLPHQELR--IKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQ--WLSKLERETLQKREEELRELRHASRLSKKVTIDFAGRTIL 258          
BLAST of EWM26149.1 vs. NCBI_GenBank
Match: gi|830016198|ref|XP_012614036.1| (activating signal cointegrator 1 isoform X1 [Microcebus murinus])

HSP 1 Score: 97.4413 bits (241), Expect = 9.313e-18
Identity = 58/175 (33.14%), Postives = 90/175 (51.43%), Query Frame = 0
Query:  233 PAPFPCRCMGTCHTPLGNCLRCGKVICSKEGWTICSFCKT---------DLTNPANGYRSRPPILLRSLAARGKLAVENE----SKEVREDVKDGSERADEMRDRLLVFDLSMAERTKVYDDQADYFPGTSGNMAWMDEKECEEEERREEERREKASGRRGPMELSIDLAGRRVF 394
            P   PC C+G  H  + NCL CG+++C +EG   C FC T          L   +N  +     L+  +   GK  +  +     +E+R  +K G E+A + +D+LL FD +   RT+V DD++DYF   S    W+ + E E  ++REEE RE     R   +++ID AGR++ 
Sbjct:  166 PGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGMENSGKADISTKDLLPHQELR--IKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQ--WLSKLERETLQKREEELRELRHASRLSKKITIDFAGRKIL 336          
The following BLAST results are available for this feature:
BLAST of EWM26149.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108142|gb|EWM26148.1|0.000e+0100.00activating signal cointegrator 1 [Nannochloropsis ... [more]
gi|156399329|ref|XP_001638454.1|1.456e-1932.69predicted protein [Nematostella vectensis] >gi|156... [more]
gi|703112|gb|AAC41738.1|3.904e-1932.04thyroid receptor interactor, partial [Homo sapiens... [more]
gi|6013191|gb|AAF01278.1|2.029e-1832.07activating signal cointegrator 1 [Homo sapiens][more]
gi|1160089726|ref|XP_020381620.1|2.376e-1832.26activating signal cointegrator 1 isoform X2 [Rhinc... [more]
gi|817345942|ref|XP_012298440.1|2.876e-1832.60activating signal cointegrator 1 isoform X3 [Aotus... [more]
gi|1176062328|ref|XP_020632042.1|4.055e-1832.09activating signal cointegrator 1-like [Orbicella f... [more]
gi|1005459700|ref|XP_015766920.1|4.879e-1832.24PREDICTED: activating signal cointegrator 1-like [... [more]
gi|1214032968|ref|XP_021569417.1|6.919e-1833.14activating signal cointegrator 1 isoform X2 [Carli... [more]
gi|830016198|ref|XP_012614036.1|9.313e-1833.14activating signal cointegrator 1 isoform X1 [Micro... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4605rna4605Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications