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Properties
| Property Name | Value |
|---|
| Product | farnesyltransferase beta subunit |
| Orig transcript id | gnl|cribi|Naga_100014g62.9299.mrna |
| Orig protein id | gnl|cribi|Naga_100014g62.9299 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:967239..970669 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4584 ID=rna4584|Name=rna4584|organism=Nannochloropsis gaditana|type=mRNA|length=2643bp
AGATTTGTACCATCGAAAATCAGGTGCCATGAAGCTCGGGCAATGGTAGG
CGTTCCTGGTCAAGGGAGCGACACTACCTGAGTGCCGGTGCGTCCTCAAA
AGAAGTTTGTTGAACTTTATAATGACAACTATTCCAAACCATACTCGATT
CTTTTGAAGGAAACTTATTATGACCAGTCTGCCATGCGCCTCCCGTCCTC
TATCACGTGTGGTTGGAAAGACACGGACCGAAGAAGAGCAGGCAGAATGT
GAGGCTTCTTGCACCTCTCTTTTGAATTCATGGTGTAATCTCGACCAGTC
TTCACGCGGAAAGCTTCAAGCCTCTGGTCTATTCAATGATAGCGGGGACA
TACGCCTTCTTCGGGAAAGACATGTCGCGTATCTTATGAAGGGACTTACA
CACTTAGGGCCTGGCTTTATCTGTCTTGACGCGAGCCGACCATGGCTGTG
TTATTGGATTCTCCACTCTCTCGATCTACTGCGGGGCCTTGAGTCGAGGA
GTCATTCGATTTTTCGCGCTGATTTAGCTCGGAAAGTCACAATTACAATG
AACTCATGCCAAAACTCCGGGGGAGGCTTCGGTGGCGGACCTTATCAGAT
ATCGCATTGCGCTCCAACATATGCGGCAGTGCTTGCCTTACTCATACTCG
GTACGGAAGAGGCCTATAAGACTATAGATCGCCCGGCGCTTTATAAGTGG
TTTCTTGCACGAAAACATTTGTCAGGTGGTTTTTGTATGCACGATGACGG
GGAAGTTGACGTTCGGGGCACGTATACAGTCATTTCGATAGCTTCGATGC
TGAATATGTTGACCCCCCAGCTAGCTGCGGGCGTTGTCGAATACCTCCTC
TCCTGTCAAACATATGAGGGTGGCTTTGGAGGGGAAACTGATCAAGAGGC
ACACGGCGGATACGTATTCTGTGCGTTTGCCGCATTGATTATTTTGTCTG
AGACAGATGGTGTAGATCTTTTTTCTTTACAGGGGTGGATTGCTCGACGT
CAAATGAGCGTAGAAGGCGGTTTCCAGGGACGGACAAATAAACTTGTGGA
TGGTTGTTATTCCTTTTGGCAAGGAGCCACAGCGATTTTAGTTGAGATGG
CTCTACATGGGGAAACAGAGACAAGAAAGGTTGTGGGTTGGAGGAAAGAG
AATGACGGAAGAATCGTGCTCTGCGCTCCGCAATCTTACACTGAAGATCT
GAGAGACTCTGGAGTCTCTGGAAAGGACTTTGGTGACACTACAGATCTCC
GCTCAGTATGTCCAAGGGAAACTGCGATGAAAAGTGACATGCCCAATATT
GAGCCATCGTGTCATGTTGGAGGAAACTTGGAATGTCTAAGTCAACATGC
GCTCCAGCGTTATATCCTTCATTGTGCTCAGGCTCTTGACGGTGGACTCC
GCGATAAGCCGGACAAACCGCGTGACTTTTATCATACGTGCTACAATCTT
TCAGGATTGAGCTGTGCCCAATGGGGTCAAATGGACTCCTTGAAGGAATC
AAAAAATGCGAGAGGTCTCAATCCTTGCGGACACCCGCTTGTGTACGGTG
ATATCGGAAACCTGTTGGAAATCACAAATCCAATCTACAATATCCGGCAA
GATAAAGTGGACCGAGCCCTTCGGTTTTTCTACCGGGAAGGGCCTGAATC
GCACGAGGTATTGCTTCTATGAAAAACGAAAACATGGAAGAGGTGCAGGG
TTTCATATACCTTACCGCGTTTGGAGAAGAAATGTAATATGTATAATTGC
GGTAAGCATTTGTCACATCGTTGGATCTATCAAATTCCTCGCAGATTTTT
AGAGTGTAAAAACCCCAAGAGAAGTAGCAAGTAGCCTTGCATTGCTTAAG
GAGCTCTTGCGCTTCCGTCTGATGGATTTTGTGACCGTACACCAAATTGT
CTCTTTTTCTGCACGATTGTTTCTTTTTCATGGTCAAGACCATTGTATGT
GATTATTTCCATGGTTTTCATACATATAGGATACCCTTCCCATGCGAAAT
GGAGACAGAAAGGATGTTTCCCTCATTTCTGCCTTCTTCACAATTCCTCT
CACTCTGGAACTATGCATAGCCTAATTGCAAAACTGACTAACTCTCTCAG
ATGTGATTCCCGGTGATTTGGAAACGATACTTTTTCCCGTTTGTCTCAAG
AATCCCTCAGTAGGCATGTATTCTATTCTGACTTCTTCCAAATTTCTCAA
TCACTCTAGTGCAGATTTGAAGTATAGTCGTGCCGAAATGTGTTGTGCAT
TCGAACTTCCAGAAACTTCTTGAGTCCTCAATAGACACTGCATTACCCCC
CCTTCACATGACAATGGATTGAATTATTGAACTAATTCGTGCGATAGTTG
CATTCAAGTGCTGCTCAGAAGAGCGCTGCACTAGATGATTGTCTAAACGC
TCCTTCAAGAGCAAAAGCTCATCAACCAATGCACCATCATTCCCGCCTTG
TGATATTACCTTGTCGATGGCACTCATTAGTGCCCGTATGGCCCCTCTAT
CTGAAATCTTAGATGTCCTTCGCCCTTCCCTACTCTCACTGCCGCTTGCA
CTACTCGTGTTACTTTTCGGACCACTACCTAATGAGCCTGTGCTGGCTTC
TTCCGAGAGGTCAGAGACCAGGTCGCCGTCACCACACACAGAG back to topprotein sequence of rna4584 >rna4584-protein ID=rna4584-protein|Name=rna4584|organism=Nannochloropsis gaditana|type=polypeptide|length=428bp
MKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARK
VTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRP
ALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGV
VEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQG
WIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVV
GWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKS
DMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYH
TCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPI
YNIRQDKVDRALRFFYREGPESHEVLLL back to topmRNA from alignment at CM002463.1:967239..970669- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4584 ID=rna4584|Name=rna4584|organism=Nannochloropsis gaditana|type=mRNA|length=3431bp|location=Sequence derived from alignment at CM002463.1:967239..970669- (Nannochloropsis gaditana)
AGATTTGTACCATCGAAAATCAGGTGCCATGAAGCTCGGGCAATGGTAGG
CGTTCCTGGTCAAGGGAGCGACACTACCTGAGTGCCGGTGCGTCCTCAAA
AGAAGTTTGTTGAACTTTATAATGACAACTATTCCAAACCATACTCGATT
CTTTTGAAGGAAACTTATTATGACCAGTCTGCCATGCGCCTCCCGTCCTC
TATCACGTGTGGTTGGAAAGACACGGACCGAAGAAGAGCAGGTGAGGGCA
AGCTGGAGGTTAGGAAACAACATAATACATAGTGAAGTATGCATGGGTAT
GCGTCCTAAAATGCACACCTATTTTCGTATATATAGGCAGAATGTGAGGC
TTCTTGCACCTCTCTTTTGAATTCATGGTGTAATCTCGACCAGGTGAGTG
TACGGTCGAGTGTCTATCGACTTTCAAGTATTTTTACACATACGGCAGAA
CTCCAGCAAGAATACGCATCTAGCTGTCAGACCGTGGCAAGATTGACAAT
TCTAAGTGCCTCGCGTAATTTTTGCTGTTTACAACAACTAAGTTCACATC
GAACACGCCCTAACAACCCCAAAACTTGTTATCATACCTGTCATTATCTG
ATTCATTATTTGTTAGTCTTCACGCGGAAAGCTTCAAGCCTCTGGTCTAT
TCAATGATAGCGGGGACATACGCCTTCTTCGGGAAAGACATGTCGCGTAT
CTTATGAAGGGACTTACACACTTAGGGCCTGGCTTTATCTGTCTTGACGC
GAGCCGACCATGGCTGTGTTATTGGATTCTCCACTCTCTCGATCTACTGC
GGGGCCTTGAGTCGAGGAGTCATTCGATTTTTCGCGCTGATTTAGCTCGG
AAAGTCACAATTACAATGAACTCATGCCAAAACTCCGGGGGAGGCTTCGG
TGGCGGACCTTATCAGATATCGCATTGCGCTCCAACATATGCGGCAGTGC
TTGCCTTACTCATACTCGGTACGGAAGAGGCCTATAAGACTATAGATCGC
CCGGCGCTTTATAAGTGGTTTCTTGCACGAAAACATTTGTCAGGTGGTTT
TTGTATGCACGATGACGGGTACGTCGATTAAAATTTGAAGCGTTTTTGGG
TTGTCCAAGGCAGCGCTGGAAACAGAAGCTGTCTGCATGGCTCTTCTCCT
TGCAAGAGACTTGGACGAAAAAGGGTTGTGTGGGCATTGTAGCATCTTGC
AATAACAACATGGAAATACTTCTTGATGTATGAACAATTTCCCCCAATTG
AAAAATACTACTGAACTTTGACGTGACTGGACCCTTTCGCGTTTCTATTT
ACTGCGATGTAAAATTTGATCTGCTGCTGTCCGCTTATCATGCTGCACAG
GGAAGTTGACGTTCGGGGCACGTATACAGTCATTTCGATAGCTTCGATGC
TGAATATGTTGACCCCCCAGCTAGCTGCGGGCGTTGTCGAATACCTCCTC
TCCTGTCAAACATATGAGGGTGGCTTTGGAGGGGAAACTGATCAAGAGGC
ACACGGCGGATACGTATTCTGTGCGTTTGCCGCATTGATTATTTTGTCTG
AGACAGATGGTGTAGATCTTTTTTCTTTACAGGGGTGGATTGCTCGACGT
CAAATGAGCGTAGAAGGCGGTTTCCAGGGACGGACAAATAAACTTGTGGA
TGGTTGTTATTCCTTTTGGCAAGGAGCCACAGCGATTTTAGTTGAGATGG
CTCTACATGGGGAAACAGAGACAAGAAAGGTTGTGGGTTGGAGGAAAGAG
AATGACGGAAGAATCGTGCTCTGCGCTCCGCAATCTTACACTGAAGATCT
GAGAGACTCTGGAGTCTCTGGAAAGGACTTTGGTGACACTACAGATCTCC
GCTCAGTATGTCCAAGGGAAACTGCGATGAAAAGTGACATGCCCAATATT
GAGCCATCGTGTCATGTTGGAGGAAACTTGGAATGTCTAAGTCAACATGC
GCTCCAGCGTTATATCCTTCATTGTGCTCAGGCTCTTGACGGTGGACTCC
GCGATAAGCCGGACAAACCGCGTGACTTTTATCATACGTGCTACAATCTT
TCAGGATTGAGCTGTGCCCAATGGGGTCAAATGGACTCCTTGAAGGAATC
AAAAAATGCGAGAGGTCTCAATCCTTGCGGACACCCGCTTGTGTACGGTG
ATATCGGAAACCTGTTGGTAAGTCGTATCAGATACAATACGTGGTCAGAT
TCAATGTGTGGTGGGTTGAGAATCGTTATAGAGGATTTGGTAACGTTCAT
TTCGATGAGAAAAGGGTAGTGACCAAAATGCGTTCGAAACTGTCTAAAGC
ATGCGATTGAGTCATTTCTCAATATAAGATATTGTCTCTCCTTTCATATC
ACAAGGAAATCACAAATCCAATCTACAATATCCGGCAAGATAAAGTGGAC
CGAGCCCTTCGGTTTTTCTACCGGGAAGGGCCTGAATCGCACGAGGTATT
GCTTCTATGAAAAACGAAAACATGGAAGAGGTGCAGGGTTTCATATACCT
TACCGCGTTTGGAGAAGAAATGTAATATGTATAATTGCGGTAAGCATTTG
TCACATCGTTGGATCTATCAAATTCCTCGCAGATTTTTAGAGTGTAAAAA
CCCCAAGAGAAGTAGCAAGTAGCCTTGCATTGCTTAAGGAGCTCTTGCGC
TTCCGTCTGATGGATTTTGTGACCGTACACCAAATTGTCTCTTTTTCTGC
ACGATTGTTTCTTTTTCATGGTCAAGACCATTGTATGTGATTATTTCCAT
GGTTTTCATACATATAGGATACCCTTCCCATGCGAAATGGAGACAGAAAG
GATGTTTCCCTCATTTCTGCCTTCTTCACAATTCCTCTCACTCTGGAACT
ATGCATAGCCTAATTGCAAAACTGACTAACTCTCTCAGATGTGATTCCCG
GTGATTTGGAAACGATACTTTTTCCCGTTTGTCTCAAGAATCCCTCAGTA
GGCATGTATTCTATTCTGACTTCTTCCAAATTTCTCAATCACTCTAGTGC
AGATTTGAAGTATAGTCGTGCCGAAATGTGTTGTGCATTCGAACTTCCAG
AAACTTCTTGAGTCCTCAATAGACACTGCATTACCCCCCCTTCACATGAC
AATGGATTGAATTATTGAACTAATTCGTGCGATAGTTGCATTCAAGTGCT
GCTCAGAAGAGCGCTGCACTAGATGATTGTCTAAACGCTCCTTCAAGAGC
AAAAGCTCATCAACCAATGCACCATCATTCCCGCCTTGTGATATTACCTT
GTCGATGGCACTCATTAGTGCCCGTATGGCCCCTCTATCTGAAATCTTAG
ATGTCCTTCGCCCTTCCCTACTCTCACTGCCGCTTGCACTACTCGTGTTA
CTTTTCGGACCACTACCTAATGAGCCTGTGCTGGCTTCTTCCGAGAGGTC
AGAGACCAGGTCGCCGTCACCACACACAGAG back to topCoding sequence (CDS) from alignment at CM002463.1:967239..970669- >rna4584 ID=rna4584|Name=rna4584|organism=Nannochloropsis gaditana|type=CDS|length=3861bp|location=Sequence derived from alignment at CM002463.1:967239..970669- (Nannochloropsis gaditana)
GAAATCACAAATCCAATCTACAATATCCGGCAAGATAAAGTGGACCGAGC
CCTTCGGTTTTTCTACCGGGAAGGGCCTGAATCGCACGAGGTATTGCTTC
TATGAGGAAGTTGACGTTCGGGGCACGTATACAGTCATTTCGATAGCTTC
GATGCTGAATATGTTGACCCCCCAGCTAGCTGCGGGCGTTGTCGAATACC
TCCTCTCCTGTCAAACATATGAGGGTGGCTTTGGAGGGGAAACTGATCAA
GAGGCACACGGCGGATACGTATTCTGTGCGTTTGCCGCATTGATTATTTT
GTCTGAGACAGATGGTGTAGATCTTTTTTCTTTACAGGGGTGGATTGCTC
GACGTCAAATGAGCGTAGAAGGCGGTTTCCAGGGACGGACAAATAAACTT
GTGGATGGTTGTTATTCCTTTTGGCAAGGAGCCACAGCGATTTTAGTTGA
GATGGCTCTACATGGGGAAACAGAGACAAGAAAGGTTGTGGGTTGGAGGA
AAGAGAATGACGGAAGAATCGTGCTCTGCGCTCCGCAATCTTACACTGAA
GATCTGAGAGACTCTGGAGTCTCTGGAAAGGACTTTGGTGACACTACAGA
TCTCCGCTCAGTATGTCCAAGGGAAACTGCGATGAAAAGTGACATGCCCA
ATATTGAGCCATCGTGTCATGTTGGAGGAAACTTGGAATGTCTAAGTCAA
CATGCGCTCCAGCGTTATATCCTTCATTGTGCTCAGGCTCTTGACGGTGG
ACTCCGCGATAAGCCGGACAAACCGCGTGACTTTTATCATACGTGCTACA
ATCTTTCAGGATTGAGCTGTGCCCAATGGGGTCAAATGGACTCCTTGAAG
GAATCAAAAAATGCGAGAGGTCTCAATCCTTGCGGACACCCGCTTGTGTA
CGGTGATATCGGAAACCTGTTGATGAAGGGACTTACACACTTAGGGCCTG
GCTTTATCTGTCTTGACGCGAGCCGACCATGGCTGTGTTATTGGATTCTC
CACTCTCTCGATCTACTGCGGGGCCTTGAGTCGAGGAGTCATTCGATTTT
TCGCGCTGATTTAGCTCGGAAAGTCACAATTACAATGAACTCATGCCAAA
ACTCCGGGGGAGGCTTCGGTGGCGGACCTTATCAGATATCGCATTGCGCT
CCAACATATGCGGCAGTGCTTGCCTTACTCATACTCGGTACGGAAGAGGC
CTATAAGACTATAGATCGCCCGGCGCTTTATAAGTGGTTTCTTGCACGAA
AACATTTGTCAGGTGGTTTTTGTATGCACGATGACGGGAAATCACAAATC
CAATCTACAATATCCGGCAAGATAAAGTGGACCGAGCCCTTCGGTTTTTC
TACCGGGAAGGGCCTGAATCGCACGAGGTATTGCTTCTATGAGGAAGTTG
ACGTTCGGGGCACGTATACAGTCATTTCGATAGCTTCGATGCTGAATATG
TTGACCCCCCAGCTAGCTGCGGGCGTTGTCGAATACCTCCTCTCCTGTCA
AACATATGAGGGTGGCTTTGGAGGGGAAACTGATCAAGAGGCACACGGCG
GATACGTATTCTGTGCGTTTGCCGCATTGATTATTTTGTCTGAGACAGAT
GGTGTAGATCTTTTTTCTTTACAGGGGTGGATTGCTCGACGTCAAATGAG
CGTAGAAGGCGGTTTCCAGGGACGGACAAATAAACTTGTGGATGGTTGTT
ATTCCTTTTGGCAAGGAGCCACAGCGATTTTAGTTGAGATGGCTCTACAT
GGGGAAACAGAGACAAGAAAGGTTGTGGGTTGGAGGAAAGAGAATGACGG
AAGAATCGTGCTCTGCGCTCCGCAATCTTACACTGAAGATCTGAGAGACT
CTGGAGTCTCTGGAAAGGACTTTGGTGACACTACAGATCTCCGCTCAGTA
TGTCCAAGGGAAACTGCGATGAAAAGTGACATGCCCAATATTGAGCCATC
GTGTCATGTTGGAGGAAACTTGGAATGTCTAAGTCAACATGCGCTCCAGC
GTTATATCCTTCATTGTGCTCAGGCTCTTGACGGTGGACTCCGCGATAAG
CCGGACAAACCGCGTGACTTTTATCATACGTGCTACAATCTTTCAGGATT
GAGCTGTGCCCAATGGGGTCAAATGGACTCCTTGAAGGAATCAAAAAATG
CGAGAGGTCTCAATCCTTGCGGACACCCGCTTGTGTACGGTGATATCGGA
AACCTGTTGATGAAGGGACTTACACACTTAGGGCCTGGCTTTATCTGTCT
TGACGCGAGCCGACCATGGCTGTGTTATTGGATTCTCCACTCTCTCGATC
TACTGCGGGGCCTTGAGTCGAGGAGTCATTCGATTTTTCGCGCTGATTTA
GCTCGGAAAGTCACAATTACAATGAACTCATGCCAAAACTCCGGGGGAGG
CTTCGGTGGCGGACCTTATCAGATATCGCATTGCGCTCCAACATATGCGG
CAGTGCTTGCCTTACTCATACTCGGTACGGAAGAGGCCTATAAGACTATA
GATCGCCCGGCGCTTTATAAGTGGTTTCTTGCACGAAAACATTTGTCAGG
TGGTTTTTGTATGCACGATGACGGGAAATCACAAATCCAATCTACAATAT
CCGGCAAGATAAAGTGGACCGAGCCCTTCGGTTTTTCTACCGGGAAGGGC
CTGAATCGCACGAGGTATTGCTTCTATGAGGAAGTTGACGTTCGGGGCAC
GTATACAGTCATTTCGATAGCTTCGATGCTGAATATGTTGACCCCCCAGC
TAGCTGCGGGCGTTGTCGAATACCTCCTCTCCTGTCAAACATATGAGGGT
GGCTTTGGAGGGGAAACTGATCAAGAGGCACACGGCGGATACGTATTCTG
TGCGTTTGCCGCATTGATTATTTTGTCTGAGACAGATGGTGTAGATCTTT
TTTCTTTACAGGGGTGGATTGCTCGACGTCAAATGAGCGTAGAAGGCGGT
TTCCAGGGACGGACAAATAAACTTGTGGATGGTTGTTATTCCTTTTGGCA
AGGAGCCACAGCGATTTTAGTTGAGATGGCTCTACATGGGGAAACAGAGA
CAAGAAAGGTTGTGGGTTGGAGGAAAGAGAATGACGGAAGAATCGTGCTC
TGCGCTCCGCAATCTTACACTGAAGATCTGAGAGACTCTGGAGTCTCTGG
AAAGGACTTTGGTGACACTACAGATCTCCGCTCAGTATGTCCAAGGGAAA
CTGCGATGAAAAGTGACATGCCCAATATTGAGCCATCGTGTCATGTTGGA
GGAAACTTGGAATGTCTAAGTCAACATGCGCTCCAGCGTTATATCCTTCA
TTGTGCTCAGGCTCTTGACGGTGGACTCCGCGATAAGCCGGACAAACCGC
GTGACTTTTATCATACGTGCTACAATCTTTCAGGATTGAGCTGTGCCCAA
TGGGGTCAAATGGACTCCTTGAAGGAATCAAAAAATGCGAGAGGTCTCAA
TCCTTGCGGACACCCGCTTGTGTACGGTGATATCGGAAACCTGTTGATGA
AGGGACTTACACACTTAGGGCCTGGCTTTATCTGTCTTGACGCGAGCCGA
CCATGGCTGTGTTATTGGATTCTCCACTCTCTCGATCTACTGCGGGGCCT
TGAGTCGAGGAGTCATTCGATTTTTCGCGCTGATTTAGCTCGGAAAGTCA
CAATTACAATGAACTCATGCCAAAACTCCGGGGGAGGCTTCGGTGGCGGA
CCTTATCAGATATCGCATTGCGCTCCAACATATGCGGCAGTGCTTGCCTT
ACTCATACTCGGTACGGAAGAGGCCTATAAGACTATAGATCGCCCGGCGC
TTTATAAGTGGTTTCTTGCACGAAAACATTTGTCAGGTGGTTTTTGTATG
CACGATGACGG back to top
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