EWM26122.1, cds4572 (CDS) Nannochloropsis gaditana

Overview
NameEWM26122.1
Unique Namecds4572
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:969602..969966 -
Alignment locationCM002463.1:968503..969319 -
Alignment locationCM002463.1:968210..968314 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26122.1
Productfarnesyltransferase beta subunit
Orig transcript idgnl|cribi|Naga_100014g62.9299.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:969602..969966 -
CM002463.1supercontigCM002463.1:968503..969319 -
CM002463.1supercontigCM002463.1:968210..968314 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0018343protein farnesylation
GO:0042127regulation of cell proliferation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005965protein farnesyltransferase complex
Vocabulary: INTERPRO
TermDefinition
IPR026872FTB
IPR001330Prenyltrans
IPR008930Terpenoid_cyclase/PrenylTrfase
Homology
BLAST of EWM26122.1 vs. NCBI_GenBank
Match: gi|585108115|gb|EWM26121.1| (farnesyltransferase beta subunit [Nannochloropsis gaditana])

HSP 1 Score: 892.878 bits (2306), Expect = 0.000e+0
Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 0
Query:    1 MKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLLL 428
            MKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLLL
Sbjct:   73 MKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLLL 500          
BLAST of EWM26122.1 vs. NCBI_GenBank
Match: gi|585108116|gb|EWM26122.1| (farnesyltransferase beta subunit [Nannochloropsis gaditana])

HSP 1 Score: 890.182 bits (2299), Expect = 0.000e+0
Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 0
Query:    1 MKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLLL 428
            MKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLLL
Sbjct:    1 MKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLLL 428          
BLAST of EWM26122.1 vs. NCBI_GenBank
Match: gi|1205944321|ref|XP_002458458.2| (protein farnesyltransferase subunit beta isoform X1 [Sorghum bicolor] >gi|1174561094|gb|OQU87492.1| hypothetical protein SORBI_3003G289400 [Sorghum bicolor])

HSP 1 Score: 323.168 bits (827), Expect = 8.048e-103
Identity = 187/419 (44.63%), Postives = 241/419 (57.52%), Query Frame = 0
Query:    2 KGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALH-GETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPL-VYGDIGNLLEITNPIYNIRQDKVDRALRFFYRE 418
            +GL HLGP F  LDA+RPWLCYW++H L LL             +L   +   +  CQ+  GG+ GGP Q+ H A TYAAV  L+ +G+E A  +I+R  LYK+ L  K +SG F MHD GE+DVR +YT IS+AS++N+L  +LA GV +Y+ SCQTYEGG  GE   EAHGGY FC  AALI+L+E + VDL SL GW+A RQ  VE GFQGRTNKLVDGCYSFWQGA   L +  L   + + +     ++ + G    C+  SY       G + K+F    D   V             I+ S  +G     +   ALQ+YIL C+Q L+GG RDKP K RD YH+CY LSGLS  Q+  +            + C  P  V G   NLLE  +P+YN+  DK   A  FF +E
Sbjct:  107 RGLRHLGPAFHVLDANRPWLCYWMVHPLALL-------DEALDDNLEDDIIDFLARCQDKDGGYSGGPGQLPHLATTYAAVNTLVTIGSERALSSINRGNLYKFMLRMKDVSGAFRMHDGGEIDVRASYTAISVASLVNILDVELAKGVGDYIASCQTYEGGIAGEPYAEAHGGYTFCGLAALILLNEAEKVDLPSLIGWVAFRQ-GVECGFQGRTNKLVDGCYSFWQGAAIALTQKLLTIVDKQLKSSYSCKRPSGGDA--CSTSSY-------GCTAKNFSSAVDYAKV---------GFDFIQQSNQIGPLFHNI---ALQQYILLCSQVLEGGFRDKPGKNRDHYHSCYCLSGLSVCQYSALTD---------ADSCPLPQHVLGPYSNLLEPIHPLYNVVLDKYHTAYDFFSKE 487          
BLAST of EWM26122.1 vs. NCBI_GenBank
Match: gi|1205944323|ref|XP_021312379.1| (protein farnesyltransferase subunit beta isoform X2 [Sorghum bicolor] >gi|1174561093|gb|OQU87491.1| hypothetical protein SORBI_3003G289400 [Sorghum bicolor])

HSP 1 Score: 319.316 bits (817), Expect = 2.202e-101
Identity = 187/419 (44.63%), Postives = 243/419 (58.00%), Query Frame = 0
Query:    2 KGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALH-GETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPL-VYGDIGNLLEITNPIYNIRQDKVDRALRFFYRE 418
            +GL HLGP F  LDA+RPWLCYW++H L LL             +L   +   +  CQ+  GG+ GGP Q+ H A TYAAV  L+ +G+E A  +I+R  LYK+ L  K +SG F MHD GE+DVR +YT IS+AS++N+L  +LA GV +Y+ SCQTYEGG  GE   EAHGGY FC  AALI+L+E + VDL SL GW+A RQ  VE GFQGRTNKLVDGCYSFWQGA   L +  L   + + +     ++ + G    C+  SY       G + K+F  ++D   V             I+ S  +G     +   ALQ+YIL C+Q L+GG RDKP K RD YH+CY LSGLS  Q+  +            + C  P  V G   NLLE  +P+YN+  DK   A  FF +E
Sbjct:  107 RGLRHLGPAFHVLDANRPWLCYWMVHPLALL-------DEALDDNLEDDIIDFLARCQDKDGGYSGGPGQLPHLATTYAAVNTLVTIGSERALSSINRGNLYKFMLRMKDVSGAFRMHDGGEIDVRASYTAISVASLVNILDVELAKGVGDYIASCQTYEGGIAGEPYAEAHGGYTFCGLAALILLNEAEKVDLPSLIGWVAFRQ-GVECGFQGRTNKLVDGCYSFWQGAAIALTQKLLTIVDKQLKSSYSCKRPSGGDA--CSTSSY-------GCTAKNF--SSDYAKV---------GFDFIQQSNQIGPLFHNI---ALQQYILLCSQVLEGGFRDKPGKNRDHYHSCYCLSGLSVCQYSALTD---------ADSCPLPQHVLGPYSNLLEPIHPLYNVVLDKYHTAYDFFSKE 485          
BLAST of EWM26122.1 vs. NCBI_GenBank
Match: gi|953491778|emb|CEG45787.1| (farnesyltransferase beta subunit [Plasmopara halstedii])

HSP 1 Score: 314.309 bits (804), Expect = 2.888e-100
Identity = 189/422 (44.79%), Postives = 237/422 (56.16%), Query Frame = 0
Query:    2 KGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGG--PYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHL-SGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFS-LQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREG 419
            +GLT L  GF+ LDASRPW+ YWILH+L+LL  L          ++  +V  T+  C N     G G  P Q+ H A  YA+ L L +LGT +A +++DR +LY++F++RKH  +G F  HD GEVDVR TY VISIAS+  +LT +L AGVV+Y+LSCQTYEGGFGGE   EAHGGY FC+ A L IL   D +  FS L  W+A RQM  EGG+QGRTNKLVDGCYSFWQGA   L+       +E R+                                 FGD      + P +             CH         +  LQRYIL C Q + GGLRDKP KPRD YHTCY LSGLS AQ+G         + R     G P+V+GD  NL+  T+P YNI  DKV +A+ +F  +G
Sbjct:   78 RGLTRLSAGFVTLDASRPWIIYWILHALELLDALPD--------EMTERVIGTLKPCWNDDHDGGFGGGPKQLGHTATNYASCLTLALLGTLDALESVDRLSLYRFFMSRKHAATGAFMAHDGGEVDVRVTYCVISIASLYGILTDELKAGVVDYILSCQTYEGGFGGEPGNEAHGGYAFCSVATLYILEAVDQIRDFSGLLHWLANRQMPFEGGYQGRTNKLVDGCYSFWQGAIPALLA------SEVRR--------------------------------RFGD------IVPYQ-------------CH---------REQLQRYILLCGQEISGGLRDKPGKPRDHYHTCYCLSGLSVAQYG---------DGR-----GSPVVFGDASNLVARTHPAYNISYDKVIKAIEYFKSKG 411          
BLAST of EWM26122.1 vs. NCBI_GenBank
Match: gi|1050646937|ref|XP_017646788.1| (PREDICTED: protein farnesyltransferase subunit beta [Gossypium arboreum])

HSP 1 Score: 315.464 bits (807), Expect = 3.293e-100
Identity = 185/429 (43.12%), Postives = 238/429 (55.48%), Query Frame = 0
Query:    2 KGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYT--EDLRDSGVSG--------KDFGD---TTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYR 417
            KGLT LGP F  LDA+RPW+CYWILHS+ LL             +L       ++ CQ   GG+ GGP Q+ H A TYAAV +L+ LG E+A  +I+R  LY +    K  SGGF MHD GE+DVR  YT IS+AS+LN+L  +L   V  Y+LSCQTYEGG  GE   EAHGGY FC  A +I+++E D +DL  L  W+  RQ  VEGGFQGRTNKLVDGCYSFWQG    L++  L+   E + +     E  G     +PQ+ T  +   + G++G         + GD   T+   +V   +        N+EP           +  ALQ+YIL C+Q L+GGLRDKP K RD YHTCY LSGLS  Q   ++        R         V G   NLLE  +P+YN+  D+   A  FF +
Sbjct:   53 KGLTGLGPSFCVLDANRPWICYWILHSIALL-------DEFVDPELEDNTIDFLSRCQGPNGGYAGGPGQMPHLATTYAAVNSLVTLGGEKALSSINREKLYMFLRQMKDASGGFRMHDGGEIDVRACYTAISVASLLNILDDELVQNVGNYILSCQTYEGGISGEPGSEAHGGYTFCGLATMILINEVDSLDLSGLTDWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGIFALLKR-LNSTKEVKPIPLGDGEGSGEE---SPQTTTSSDAAGEEGLNGDLSLGGSHSEIGDQHNTSSQDNVIDIDHNHSKGHANVEP---------LFNSLALQQYILLCSQELNGGLRDKPGKSRDHYHTCYCLSGLSVCQRSWLEDEDSPPLPRA--------VLGPYSNLLEPIHPLYNVVLDRYREAYEFFTK 452          
BLAST of EWM26122.1 vs. NCBI_GenBank
Match: gi|1029008830|ref|XP_016668301.1| (PREDICTED: protein farnesyltransferase subunit beta-like [Gossypium hirsutum])

HSP 1 Score: 314.309 bits (804), Expect = 7.986e-100
Identity = 184/429 (42.89%), Postives = 235/429 (54.78%), Query Frame = 0
Query:    2 KGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYT-------EDLRDSGVSGKDFGDTTDLRSVCPRETAMKSD------MPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYR 417
            KGLT LGP F  LDA+RPW+CYWILHS+ LL             +L       ++ CQ   GG+ GGP Q+ H A TYAAV +L+ LG ++A  +I+R  LY +    K  SGGF MHD GE+DVR  YT IS+AS+LN+L  +L   V  Y+LSCQTYEGG  GE   EAHGGY FC  A +I+++E D +DL SL  W+  RQ  VEGGFQGRTNKLVDGCYSFWQG    L++  L+   E + +     E  G     +PQ+ T       E L      G    +  D  +   ++  +  D        N+EP           +  ALQ+YIL C+Q L+GGLRDKP K RD YHTCY LSGLS  Q   ++        R         V G   NLLE  +P+YN+  D+   A  FF +
Sbjct:   53 KGLTGLGPSFCVLDANRPWICYWILHSIALL-------DEFVDPELENNTIDFLSRCQGPNGGYAGGPGQMPHLATTYAAVNSLVTLGGDKALSSINREKLYMFLRQMKDASGGFRMHDGGEIDVRACYTAISVASLLNILDDELVQNVGNYILSCQTYEGGISGEPGSEAHGGYTFCGLATMILINEVDRLDLSSLTDWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGIFALLKR-LNSTKEVKPIPLGDGEGSGEE---SPQTTTSSDAAGEEGLNGDLSLGGSHSEIGDQHNTSSQDNVIDIDHNHSKGHANVEP---------LFNSLALQQYILLCSQELNGGLRDKPGKSRDHYHTCYCLSGLSVCQRSWLEDEDSPPLPRA--------VLGPYSNLLEPIHPLYNVVLDRYRDAYEFFTK 452          
BLAST of EWM26122.1 vs. NCBI_GenBank
Match: gi|823167845|ref|XP_012483791.1| (PREDICTED: protein farnesyltransferase subunit beta [Gossypium raimondii] >gi|763766544|gb|KJB33759.1| hypothetical protein B456_006G029800 [Gossypium raimondii])

HSP 1 Score: 312.383 bits (799), Expect = 4.747e-99
Identity = 186/430 (43.26%), Postives = 236/430 (54.88%), Query Frame = 0
Query:    2 KGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQS-----------YTEDLRDSGVSGKDFGDTTDLRS---VCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYR 417
            KGLT LGP F  LDA+RPW+CYWILHS+ LL             +L       ++ CQ   GG+ GGP Q+ H A TYAAV +L+ LG ++A+ +I+R  LY +    K  SGGF MHD GE+DVR  YT IS+AS+LN+L  +L   V  Y+LSCQTYEGG  GE   EAHGGY FC  A +I+++E D +DL SL  W+  RQ  VEGGFQGRTNKLVDGCYSFWQG    L++  L+     + +     E  G     +PQ+             EDL   G S  + GD  +  S   V   +        N+EP           +  ALQ+YIL C+Q L+GGLRDKP K RD YHTCY LSGLS  Q   ++        R         V G   NLLE  +P+YN+  D+   A  FF +
Sbjct:   53 KGLTGLGPSFCVLDANRPWICYWILHSIALL-------DEFVDPELEDNTIDFLSRCQGPNGGYAGGPGQMPHLATTYAAVNSLVTLGGDKAFSSINREKLYMFLRQMKDASGGFRMHDGGEIDVRACYTAISVASLLNILDDELVQNVGNYILSCQTYEGGISGEPGSEAHGGYTFCGLATMILINEVDRLDLSSLTDWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGIFALLKR-LNSTKGVKPIPLGDGEGSGEE---SPQTTASSDAAGEEGLNEDLSLGG-SHSEIGDQNNTSSQVNVIDIDHNHSKGHANVEP---------LFNSLALQQYILLCSQELNGGLRDKPGKSRDHYHTCYCLSGLSVCQRSWLEDEDSPPLPRA--------VLGPYSNLLEPIHPLYNVVLDRYRGAHEFFTK 452          
BLAST of EWM26122.1 vs. NCBI_GenBank
Match: gi|222619220|gb|EEE55352.1| (hypothetical protein OsJ_03383 [Oryza sativa Japonica Group])

HSP 1 Score: 310.842 bits (795), Expect = 3.571e-98
Identity = 192/417 (46.04%), Postives = 242/417 (58.03%), Query Frame = 0
Query:    2 KGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTT-DLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQM-DSLKESKNARGLNPCGHPL-VYGDIGNLLEITNPIYNIRQDKVDRALRFF 415
            +GL HLGP F  LDA+RPWLCYWI+H+L LL  +          D+   +   ++ CQ+  GG+GGGP Q+ H A TYAAV  L+ +G+E A  +++R  LYK+ L  K  SG F MHD GE+DVR +YT IS+AS++N+L  +LA GV  Y+  CQTYEGG  GE   EAHGGY FC  A +I+L+E D +DL SL GW+A RQ  VE GFQGRTNKLVDGCYSFWQ   AI V   L   T + K++ + +     +         E L+ S  S +  GD      S        K     IE S  +G     +   ALQ+YIL CAQ LDGGLRDKP K RD YH+CY LSGLS +Q+  M DS          + C  P  V G   NLLE  +P+YN+  DK   A  FF
Sbjct:   79 RGLKHLGPSFHVLDANRPWLCYWIIHALALLDEIPD--------DVEDDIVDFLSRCQDKDGGYGGGPGQLPHLATTYAAVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSGAFRMHDGGEIDVRASYTAISVASLVNILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGLATMILLNEVDKLDLASLIGWVAFRQ-GVECGFQGRTNKLVDGCYSFWQ-VNAIPVFFFLASSTLSDKLLVYDQGAALALTQKLMTVVDEQLKSSYSSKRPPGDDACGTSSSTEAAYYAKFGFDFIEKSNQIGPLFHNI---ALQQYILLCAQVLDGGLRDKPGKNRDHYHSCYCLSGLSVSQYSAMVDS----------DACPLPQHVLGPYSNLLEPIHPLYNVVLDKYHTAYEFF 472          
BLAST of EWM26122.1 vs. NCBI_GenBank
Match: gi|1029017973|ref|XP_016672814.1| (PREDICTED: protein farnesyltransferase subunit beta-like isoform X2 [Gossypium hirsutum])

HSP 1 Score: 309.686 bits (792), Expect = 5.509e-98
Identity = 186/430 (43.26%), Postives = 236/430 (54.88%), Query Frame = 0
Query:    2 KGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQS-----------YTEDLRDSGVSGKDFGD---TTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYR 417
            KGLT LGP F  LDA+RPW+CYWILHS+ LL             +L       ++ CQ   GG+ GGP Q+ H A TYAAV +L+ LG ++A  +I+R  LY +    K  SGGF MHD GE+DVR  YT IS+AS+LN+L  +L   V  Y+LSCQTYEGG  GE   EAHGGY FC  A +I+++E D +DL SL  W+  RQ  VEGGFQGRTNKLVDGCYSFWQG    L++  L+     + +     E  G     +PQ+             EDL   G S  + GD   T+   +V   +        N+EP           +  ALQ+YIL C+Q L+GGLRDKP K RD YHTCY LSGLS  Q   ++        R         V G   NLLE  +P+YN+  D+   A  FF +
Sbjct:   53 KGLTGLGPSFCVLDANRPWICYWILHSIALL-------DEFVDPELEDNTIDFLSRCQGPNGGYAGGPGQMPHLATTYAAVNSLVTLGGDKALSSINREKLYMFLRQMKDASGGFRMHDGGEIDVRACYTAISVASLLNILDDELVQNVGNYILSCQTYEGGISGEPGSEAHGGYTFCGLATMILINEVDRLDLSSLTDWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGIFALLKR-LNSTKRVKPIPLGDGEGSGEE---SPQTTASSDAAGEEGLNEDLSLGG-SHSEIGDQHNTSSQVNVIDIDHNHSKGHANVEP---------LFNSLALQQYILLCSQELNGGLRDKPGKSRDHYHTCYCLSGLSVCQRSWLEDEDSPPLPRA--------VLGPYSNLLEPIHPLYNVVLDRYWGAHEFFTK 452          
The following BLAST results are available for this feature:
BLAST of EWM26122.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108115|gb|EWM26121.1|0.000e+0100.00farnesyltransferase beta subunit [Nannochloropsis ... [more]
gi|585108116|gb|EWM26122.1|0.000e+0100.00farnesyltransferase beta subunit [Nannochloropsis ... [more]
gi|1205944321|ref|XP_002458458.2|8.048e-10344.63protein farnesyltransferase subunit beta isoform X... [more]
gi|1205944323|ref|XP_021312379.1|2.202e-10144.63protein farnesyltransferase subunit beta isoform X... [more]
gi|953491778|emb|CEG45787.1|2.888e-10044.79farnesyltransferase beta subunit [Plasmopara halst... [more]
gi|1050646937|ref|XP_017646788.1|3.293e-10043.12PREDICTED: protein farnesyltransferase subunit bet... [more]
gi|1029008830|ref|XP_016668301.1|7.986e-10042.89PREDICTED: protein farnesyltransferase subunit bet... [more]
gi|823167845|ref|XP_012483791.1|4.747e-9943.26PREDICTED: protein farnesyltransferase subunit bet... [more]
gi|222619220|gb|EEE55352.1|3.571e-9846.04hypothetical protein OsJ_03383 [Oryza sativa Japon... [more]
gi|1029017973|ref|XP_016672814.1|5.509e-9843.26PREDICTED: protein farnesyltransferase subunit bet... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4584rna4584Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications