rna4436, rna4436 (mRNA) Nannochloropsis gaditana

Overview
Namerna4436
Unique Namerna4436
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1075
Alignment locationCM002463.1:584529..585367 -

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Properties
Property NameValue
Productribosomal protein l23
Orig transcript idgnl|cribi|Naga_100025g57.7495.mrna
Orig protein idgnl|cribi|Naga_100025g57.7495
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:584529..585367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g57gene4280Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4436rna4436-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26204.1cds4425Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4436 ID=rna4436|Name=rna4436|organism=Nannochloropsis gaditana|type=mRNA|length=1075bp
GCAATCGGGGAAAGGAGGGAAGAACCCGAGACTTGAGTACAGACGAGCCA
AGGCACCCACGAATACAATTTACCACCCAATCACAGGATTGTATTTGTGC
GCGATGACACAATCAAGACGGCGACCAAGGCCCCTGGATCTTGCTTTGCC
GTTGTTCGTGCTTTTCCTTATTCCCTCGCCTGCGCATCCGCTCAGCCTGG
AAGTACCGCCCCGTGACAAAGTATGCTTGTATCAGTACTACGATGTTGGG
GAGACAGGCAAAGCAGAGGTGTTCGTCGTCAATGGAGGCAATCTTGACAT
CGGCGTCAGTGTGGAAGGGCCATTCACGGACGACGTGCACGGTACACCGA
GCAAAACAACACAAGAGACTAAGACGGTGTATGACGCTATTGTGGCATCT
TCTAGCGCTTTTCTCAACCAACTGCACCCGGCGGGAGTCACAGCATCGGC
GGACGGAATCGAAATTAGCTGGCCAGCACAACCCGGTGCCTACGCCTTGT
GCCTCGACAACACCATGAGTCACGTCCAAACTAAAGTGATCGAGTTTTCC
TTCCCAGCATCCAAGGAGGGTGCAGGTACGGATGACTTCGACTTGGACGC
CGCCTTGGCAGCTGCAAATGAGGGCAGCGGAACGAATGACACCATTTTAG
AGAACATAAAGCAATCTTACAAGGCCGACCTGGCCCTTCTGAAGCGTAGC
GCGCAGCGGATCGGCCGTACTTTAACGGACGTGCAGCATAAACAGGTGAA
AGAACGACATCGCCTCGCCCTTCAAACGGCAGCCAACCAGAAGAATCACC
AGAAGATGGTCGTGTCTTCCGTATTTGAAACCGTAGTTTTCATCAGCGTG
TCTCTTTTCCAACTTTTCTGGGTGCGGAGGTGGTTCGAGGGCCGGGGCCT
GCGGGCCCGGTCACGGGAATGGGCATAAGGGAAAGGGCGACGCGGTGATA
TCACAGAATAAAGCATGCTCTCCATCATAAAGAAATCGCACAAAGAAATC
GATCAGAAACTTGGTGGAGAAAAATGTGCCACTTTCAGTGCGGTATCGAT
GGGCGGTCCCCAAAAAACATAACCC
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protein sequence of rna4436

>rna4436-protein ID=rna4436-protein|Name=rna4436|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MSSKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRL
NRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQGGDEG
VGHHRPCGEGMRGPVASYRLQLWHDCLKPRTVLCHEYPEWAGGMSSISDY
LRRKKRHLANEQRGLVDTFPSDLSALRRTRLRGSAKIWSG
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mRNA from alignment at CM002463.1:584529..585367-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4436 ID=rna4436|Name=rna4436|organism=Nannochloropsis gaditana|type=mRNA|length=839bp|location=Sequence derived from alignment at CM002463.1:584529..585367- (Nannochloropsis gaditana)
ATGTCTTCTAAACGTGGACGCGGGGGTACCACCGGTGCCAAATTCCGCAC
GACCCTGGGTCTCCCCGTAGCGGCCGTCATCAACTGCGCCGGTAAGCACG
CTGAGGATGCAAAAGGGCGTAAATGTGGACTCAAACAGAAATTGTTTCTG
TGTTTGTTCGAGAGTGCTCACTTGGTTACCAAAGCTTGGAAACTTGTTTT
TCTTCCTCACACTTTCTCTCCCTTCCGTGTCAAATGGCGCCATGCTTGTC
TTCAGATAACACCGGAGCCAAGAACTTGCACATCATTGCCGTGGGAGGGG
TGAAAGGCCGATTGAATCGGCTGCCCCAAGCAAGTCTGGGGGATATGGTC
ATGGCGTCCGTGCGAAAAGGGAAGCCCGAGCTGCGTAAGAAGGTGATGCC
TGCTGTGGTGATCCGGCAGCGGAAGGCGTGGCGCAGAAAAGATGGGATTT
TCATCTATTTCGAGGACAACGCTGGAGTCATCGTCAACAACAAGGGGGAG
ATGAAGGGGTCGGCCATCACAGGCCCTGTGGCGAAGGAATGCGCGGACCT
GTGGCCTCGTATCGCCTCCAACTCTGGCACGATTGTCTGAAGCCCCGGAC
GGTGCTTTGTCACGAGTATCCAGAATGGGCGGGAGGAATGAGCTCTATCT
CTGACTACCTGAGGCGGAAGAAGGTCCTGGGAGCATGTCGCTTTACTACG
GGGGGCAGGTCGGCGGGGGCGGGTGTGACAGAGACACTTGGCGAATGAAC
AGAGAGGCCTCGTCGATACCTTTCCTTCTGATCTATCGGCGCTGAGACGA
ACCAGGCTTAGGGGCTCCGCCAAAATATGGAGTGGATAG
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Coding sequence (CDS) from alignment at CM002463.1:584529..585367-

>rna4436 ID=rna4436|Name=rna4436|organism=Nannochloropsis gaditana|type=CDS|length=2292bp|location=Sequence derived from alignment at CM002463.1:584529..585367- (Nannochloropsis gaditana)
AGACACTTGGCGAATGAACAGAGAGGCCTCGTCGATACCTTTCCTTCTGA
TCTATCGGCGCTGAGACGAACCAGGCTTAGGGGCTCCGCCAAAATATGGA
GTGGATAGAAAAGATGGGATTTTCATCTATTTCGAGGACAACGCTGGAGT
CATCGTCAACAACAAGGGGGAGATGAAGGGGTCGGCCATCACAGGCCCTG
TGGCGAAGGAATGCGCGGACCTGTGGCCTCGTATCGCCTCCAACTCTGGC
ACGATTGTCTGAAGCCCCGGACGGTGCTTTGTCACGAGTATCCAGAATGG
GCGGGAGGAATGAGCTCTATCTCTGACTACCTGAGGCGGAAGAAGATAAC
ACCGGAGCCAAGAACTTGCACATCATTGCCGTGGGAGGGGTGAAAGGCCG
ATTGAATCGGCTGCCCCAAGCAAGTCTGGGGGATATGGTCATGGCGTCCG
TGCGAAAAGGGAAGCCCGAGCTGCGTAAGAAGATGTCTTCTAAACGTGGA
CGCGGGGGTACCACCGGTGCCAAATTCCGCACGACCCTGGGTCTCCCCGT
AGCGGCCGTCATCAACTGCGCCGAGACACTTGGCGAATGAACAGAGAGGC
CTCGTCGATACCTTTCCTTCTGATCTATCGGCGCTGAGACGAACCAGGCT
TAGGGGCTCCGCCAAAATATGGAGTGGATAGAAAAGATGGGATTTTCATC
TATTTCGAGGACAACGCTGGAGTCATCGTCAACAACAAGGGGGAGATGAA
GGGGTCGGCCATCACAGGCCCTGTGGCGAAGGAATGCGCGGACCTGTGGC
CTCGTATCGCCTCCAACTCTGGCACGATTGTCTGAAGCCCCGGACGGTGC
TTTGTCACGAGTATCCAGAATGGGCGGGAGGAATGAGCTCTATCTCTGAC
TACCTGAGGCGGAAGAAGATAACACCGGAGCCAAGAACTTGCACATCATT
GCCGTGGGAGGGGTGAAAGGCCGATTGAATCGGCTGCCCCAAGCAAGTCT
GGGGGATATGGTCATGGCGTCCGTGCGAAAAGGGAAGCCCGAGCTGCGTA
AGAAGATGTCTTCTAAACGTGGACGCGGGGGTACCACCGGTGCCAAATTC
CGCACGACCCTGGGTCTCCCCGTAGCGGCCGTCATCAACTGCGCCGAGAC
ACTTGGCGAATGAACAGAGAGGCCTCGTCGATACCTTTCCTTCTGATCTA
TCGGCGCTGAGACGAACCAGGCTTAGGGGCTCCGCCAAAATATGGAGTGG
ATAGAAAAGATGGGATTTTCATCTATTTCGAGGACAACGCTGGAGTCATC
GTCAACAACAAGGGGGAGATGAAGGGGTCGGCCATCACAGGCCCTGTGGC
GAAGGAATGCGCGGACCTGTGGCCTCGTATCGCCTCCAACTCTGGCACGA
TTGTCTGAAGCCCCGGACGGTGCTTTGTCACGAGTATCCAGAATGGGCGG
GAGGAATGAGCTCTATCTCTGACTACCTGAGGCGGAAGAAGATAACACCG
GAGCCAAGAACTTGCACATCATTGCCGTGGGAGGGGTGAAAGGCCGATTG
AATCGGCTGCCCCAAGCAAGTCTGGGGGATATGGTCATGGCGTCCGTGCG
AAAAGGGAAGCCCGAGCTGCGTAAGAAGATGTCTTCTAAACGTGGACGCG
GGGGTACCACCGGTGCCAAATTCCGCACGACCCTGGGTCTCCCCGTAGCG
GCCGTCATCAACTGCGCCGAGACACTTGGCGAATGAACAGAGAGGCCTCG
TCGATACCTTTCCTTCTGATCTATCGGCGCTGAGACGAACCAGGCTTAGG
GGCTCCGCCAAAATATGGAGTGGATAGAAAAGATGGGATTTTCATCTATT
TCGAGGACAACGCTGGAGTCATCGTCAACAACAAGGGGGAGATGAAGGGG
TCGGCCATCACAGGCCCTGTGGCGAAGGAATGCGCGGACCTGTGGCCTCG
TATCGCCTCCAACTCTGGCACGATTGTCTGAAGCCCCGGACGGTGCTTTG
TCACGAGTATCCAGAATGGGCGGGAGGAATGAGCTCTATCTCTGACTACC
TGAGGCGGAAGAAGATAACACCGGAGCCAAGAACTTGCACATCATTGCCG
TGGGAGGGGTGAAAGGCCGATTGAATCGGCTGCCCCAAGCAAGTCTGGGG
GATATGGTCATGGCGTCCGTGCGAAAAGGGAAGCCCGAGCTGCGTAAGAA
GATGTCTTCTAAACGTGGACGCGGGGGTACCACCGGTGCCAAATTCCGCA
CGACCCTGGGTCTCCCCGTAGCGGCCGTCATCAACTGCGCCG
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Synonyms
Publications