EWM26204.1, cds4425 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|585108203|gb|EWM26204.1| (ribosomal protein l23 [Nannochloropsis gaditana]) HSP 1 Score: 390.193 bits (1001), Expect = 1.990e-137 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query: 1 MSSKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQGGDEGVGHHRPCGEGMRGPVASYRLQLWHDCLKPRTVLCHEYPEWAGGMSSISDYLRRKKRHLANEQRGLVDTFPSDLSALRRTRLRGSAKIWSG 190
MSSKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQGGDEGVGHHRPCGEGMRGPVASYRLQLWHDCLKPRTVLCHEYPEWAGGMSSISDYLRRKKRHLANEQRGLVDTFPSDLSALRRTRLRGSAKIWSG
Sbjct: 1 MSSKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQGGDEGVGHHRPCGEGMRGPVASYRLQLWHDCLKPRTVLCHEYPEWAGGMSSISDYLRRKKRHLANEQRGLVDTFPSDLSALRRTRLRGSAKIWSG 190
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|38571606|gb|AAH62716.1| (Ribosomal protein L23 [Homo sapiens] >gi|649122617|gb|AIC55567.1| RPL23, partial [synthetic construct] >gi|1147674123|emb|SJX26900.1| unnamed protein product, partial [Human ORFeome Gateway entry vector]) HSP 1 Score: 133.265 bits (334), Expect = 1.580e-36 Identity = 76/132 (57.58%), Postives = 92/132 (69.70%), Query Frame = 0
Query: 3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV-----GHHRPCGEGMRGPVASYRLQLW 123
SKRGRGG++GAKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK R + QR S+R++ G + GV G + G + GPVA LW
Sbjct: 2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVRPAVVIR--QRKSYRRKDGVFLYFEDNAGVIVNNKGEMK--GSAITGPVAKECADLW 129
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|10121725|gb|AAG13342.1|AF266222_1 (ribosomal protein L23 [Gillichthys mirabilis]) HSP 1 Score: 131.724 bits (330), Expect = 5.282e-36 Identity = 76/132 (57.58%), Postives = 93/132 (70.45%), Query Frame = 0
Query: 3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV-----GHHRPCGEGMRGPVASYRLQLW 123
SKRGRGG++GAKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK + + R QR S+R++ G + GV G + G + GPVA LW
Sbjct: 2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKV-YPAVVIR-QRKSYRRKDGVFLYFEDNAGVIVNNKGEMK--GSAITGPVAKDCADLW 129
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|260794408|ref|XP_002592201.1| (hypothetical protein BRAFLDRAFT_123946 [Branchiostoma floridae] >gi|1126193899|ref|XP_019630012.1| PREDICTED: 60S ribosomal protein L23 [Branchiostoma belcheri] >gi|30144650|gb|AAP14949.1| ribosomal protein L23 [Branchiostoma belcheri tsingtauense] >gi|229277416|gb|EEN48212.1| hypothetical protein BRAFLDRAFT_123946 [Branchiostoma floridae]) HSP 1 Score: 131.339 bits (329), Expect = 6.494e-36 Identity = 76/132 (57.58%), Postives = 90/132 (68.18%), Query Frame = 0
Query: 3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV-----GHHRPCGEGMRGPVASYRLQLW 123
SKRGRGG +GAKFR +LGLPV AVINCADNTGAKNL+IIAV G+KGRLNRLP A +GDMVMA+V+KGKPELRKK + QR S+R++ G + GV G + G + GPVA LW
Sbjct: 2 SKRGRGGASGAKFRISLGLPVGAVINCADNTGAKNLYIIAVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVIR--QRKSYRRKDGVFLYFEDNAGVIVNVKGEMK--GSAITGPVAKECADLW 129
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|86355131|dbj|BAE78800.1| (ribosomal protein L23 [Pelodiscus sinensis]) HSP 1 Score: 131.339 bits (329), Expect = 6.709e-36 Identity = 75/128 (58.59%), Postives = 91/128 (71.09%), Query Frame = 0
Query: 3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV-GHHRPCGEGMRGPVASYRLQLW 123
SKRGRGG++GAKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK + QR S+R++ G + GV G + G + GPVA LW
Sbjct: 2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIR--QRKSYRRKDGVFLYFEDNAGVIGEMK--GSAITGPVAKECADLW 125
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|225705444|gb|ACO08568.1| (60S ribosomal protein L23 [Oncorhynchus mykiss]) HSP 1 Score: 131.339 bits (329), Expect = 8.615e-36 Identity = 66/94 (70.21%), Postives = 79/94 (84.04%), Query Frame = 0
Query: 3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG 96
SKRGRGG++GAKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK R + QR S+R++ G
Sbjct: 2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVRPAVVIR--QRKSYRRKDG 93
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|554534477|ref|XP_005861970.1| (PREDICTED: 60S ribosomal protein L23 [Myotis brandtii]) HSP 1 Score: 130.954 bits (328), Expect = 9.605e-36 Identity = 74/130 (56.92%), Postives = 89/130 (68.46%), Query Frame = 0
Query: 3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV---GHHRPCGEGMRGPVASYRLQLW 123
SKRGRGG++GAKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK + QR S+R++ G + GV G + GPVA LW
Sbjct: 2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIR--QRKSYRRKDGVFLYFEDNAGVIVNNKEEMKGSAITGPVAKECADLW 129
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|602715618|ref|XP_007468010.1| (PREDICTED: 60S ribosomal protein L23-like [Lipotes vexillifer]) HSP 1 Score: 131.724 bits (330), Expect = 1.056e-35 Identity = 74/130 (56.92%), Postives = 89/130 (68.46%), Query Frame = 0
Query: 3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGVGHHRPC---GEGMRGPVASYRLQLW 123
SKRGRGG++ AKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK + QR SHR++ G + GV + G + GPVA LW
Sbjct: 2 SKRGRGGSSAAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVI--RQRKSHRRKDGVFLYFEDNAGVIVNNKVEMKGSAITGPVAKECADLW 129
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|585709560|ref|XP_006824374.1| (PREDICTED: 60S ribosomal protein L23-like [Saccoglossus kowalevskii]) HSP 1 Score: 130.568 bits (327), Expect = 1.636e-35 Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 0
Query: 3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV-----GHHRPCGEGMRGPVASYRLQLW 123
SKRGRGG++GAKFR +LGLPV AV+NCADNTGAKNL+II+V G+KGRLNRLP A++GDMVMA+V+KGKPELRKK + R QR +R+++G + GV G + G + GPVA LW
Sbjct: 2 SKRGRGGSSGAKFRISLGLPVGAVVNCADNTGAKNLYIISVKGIKGRLNRLPAAAVGDMVMATVKKGKPELRKKV-MPAVIIR-QRKPYRRKEGIVLYFEDNAGVIVNQKGEMK--GSAITGPVAKECADLW 129
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|41282078|ref|NP_957026.1| (60S ribosomal protein L23 [Danio rerio] >gi|410901665|ref|XP_003964316.1| PREDICTED: 60S ribosomal protein L23 [Takifugu rubripes] >gi|51316654|sp|Q6PC14.1|RL23_DANRE RecName: Full=60S ribosomal protein L23 >gi|37747951|gb|AAH59509.1| Zgc:73149 [Danio rerio] >gi|47216271|emb|CAG05967.1| unnamed protein product, partial [Tetraodon nigroviridis] >gi|51038319|gb|AAT94068.1| ribosomal protein L23 [Sparus aurata] >gi|211827611|gb|AAH49038.2| Zgc:73149 [Danio rerio]) HSP 1 Score: 130.183 bits (326), Expect = 2.055e-35 Identity = 75/132 (56.82%), Postives = 91/132 (68.94%), Query Frame = 0
Query: 3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV-----GHHRPCGEGMRGPVASYRLQLW 123
SKRGRGG++GAKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK + QR S+R++ G + GV G + G + GPVA LW
Sbjct: 2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIR--QRKSYRRKDGVFLYFEDNAGVIVNNKGEMK--GSAITGPVAKECADLW 129 The following BLAST results are available for this feature:
BLAST of EWM26204.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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