EWM26204.1, cds4425 (CDS) Nannochloropsis gaditana

Overview
NameEWM26204.1
Unique Namecds4425
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:585277..585367 -
Alignment locationCM002463.1:584976..585112 -
Alignment locationCM002463.1:584695..584931 -
Alignment locationCM002463.1:584529..584636 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26204.1
Productribosomal protein l23
Orig transcript idgnl|cribi|Naga_100025g57.7495.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:585277..585367 -
CM002463.1supercontigCM002463.1:584976..585112 -
CM002463.1supercontigCM002463.1:584695..584931 -
CM002463.1supercontigCM002463.1:584529..584636 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0003723RNA binding
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005730nucleolus
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0009719response to endogenous stimulus
GO:0007049cell cycle
GO:0006139nucleobase-containing compound metabolic process
GO:0006810transport
GO:0042221response to chemical
GO:0006464cellular protein modification process
GO:0009056catabolic process
GO:0007165signal transduction
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR023571Ribosomal_L14_dom
IPR000218Ribosomal_L14b/L23e
Homology
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|585108203|gb|EWM26204.1| (ribosomal protein l23 [Nannochloropsis gaditana])

HSP 1 Score: 390.193 bits (1001), Expect = 1.990e-137
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:    1 MSSKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQGGDEGVGHHRPCGEGMRGPVASYRLQLWHDCLKPRTVLCHEYPEWAGGMSSISDYLRRKKRHLANEQRGLVDTFPSDLSALRRTRLRGSAKIWSG 190
            MSSKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQGGDEGVGHHRPCGEGMRGPVASYRLQLWHDCLKPRTVLCHEYPEWAGGMSSISDYLRRKKRHLANEQRGLVDTFPSDLSALRRTRLRGSAKIWSG
Sbjct:    1 MSSKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQGGDEGVGHHRPCGEGMRGPVASYRLQLWHDCLKPRTVLCHEYPEWAGGMSSISDYLRRKKRHLANEQRGLVDTFPSDLSALRRTRLRGSAKIWSG 190          
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|38571606|gb|AAH62716.1| (Ribosomal protein L23 [Homo sapiens] >gi|649122617|gb|AIC55567.1| RPL23, partial [synthetic construct] >gi|1147674123|emb|SJX26900.1| unnamed protein product, partial [Human ORFeome Gateway entry vector])

HSP 1 Score: 133.265 bits (334), Expect = 1.580e-36
Identity = 76/132 (57.58%), Postives = 92/132 (69.70%), Query Frame = 0
Query:    3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV-----GHHRPCGEGMRGPVASYRLQLW 123
            SKRGRGG++GAKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK R    +   QR S+R++ G       + GV     G  +  G  + GPVA     LW
Sbjct:    2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVRPAVVIR--QRKSYRRKDGVFLYFEDNAGVIVNNKGEMK--GSAITGPVAKECADLW 129          
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|10121725|gb|AAG13342.1|AF266222_1 (ribosomal protein L23 [Gillichthys mirabilis])

HSP 1 Score: 131.724 bits (330), Expect = 5.282e-36
Identity = 76/132 (57.58%), Postives = 93/132 (70.45%), Query Frame = 0
Query:    3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV-----GHHRPCGEGMRGPVASYRLQLW 123
            SKRGRGG++GAKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK  +   + R QR S+R++ G       + GV     G  +  G  + GPVA     LW
Sbjct:    2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKV-YPAVVIR-QRKSYRRKDGVFLYFEDNAGVIVNNKGEMK--GSAITGPVAKDCADLW 129          
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|260794408|ref|XP_002592201.1| (hypothetical protein BRAFLDRAFT_123946 [Branchiostoma floridae] >gi|1126193899|ref|XP_019630012.1| PREDICTED: 60S ribosomal protein L23 [Branchiostoma belcheri] >gi|30144650|gb|AAP14949.1| ribosomal protein L23 [Branchiostoma belcheri tsingtauense] >gi|229277416|gb|EEN48212.1| hypothetical protein BRAFLDRAFT_123946 [Branchiostoma floridae])

HSP 1 Score: 131.339 bits (329), Expect = 6.494e-36
Identity = 76/132 (57.58%), Postives = 90/132 (68.18%), Query Frame = 0
Query:    3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV-----GHHRPCGEGMRGPVASYRLQLW 123
            SKRGRGG +GAKFR +LGLPV AVINCADNTGAKNL+IIAV G+KGRLNRLP A +GDMVMA+V+KGKPELRKK      +   QR S+R++ G       + GV     G  +  G  + GPVA     LW
Sbjct:    2 SKRGRGGASGAKFRISLGLPVGAVINCADNTGAKNLYIIAVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVIR--QRKSYRRKDGVFLYFEDNAGVIVNVKGEMK--GSAITGPVAKECADLW 129          
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|86355131|dbj|BAE78800.1| (ribosomal protein L23 [Pelodiscus sinensis])

HSP 1 Score: 131.339 bits (329), Expect = 6.709e-36
Identity = 75/128 (58.59%), Postives = 91/128 (71.09%), Query Frame = 0
Query:    3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV-GHHRPCGEGMRGPVASYRLQLW 123
            SKRGRGG++GAKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK      +   QR S+R++ G       + GV G  +  G  + GPVA     LW
Sbjct:    2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIR--QRKSYRRKDGVFLYFEDNAGVIGEMK--GSAITGPVAKECADLW 125          
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|225705444|gb|ACO08568.1| (60S ribosomal protein L23 [Oncorhynchus mykiss])

HSP 1 Score: 131.339 bits (329), Expect = 8.615e-36
Identity = 66/94 (70.21%), Postives = 79/94 (84.04%), Query Frame = 0
Query:    3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG 96
            SKRGRGG++GAKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK R    +   QR S+R++ G
Sbjct:    2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVRPAVVIR--QRKSYRRKDG 93          
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|554534477|ref|XP_005861970.1| (PREDICTED: 60S ribosomal protein L23 [Myotis brandtii])

HSP 1 Score: 130.954 bits (328), Expect = 9.605e-36
Identity = 74/130 (56.92%), Postives = 89/130 (68.46%), Query Frame = 0
Query:    3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV---GHHRPCGEGMRGPVASYRLQLW 123
            SKRGRGG++GAKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK      +   QR S+R++ G       + GV         G  + GPVA     LW
Sbjct:    2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIR--QRKSYRRKDGVFLYFEDNAGVIVNNKEEMKGSAITGPVAKECADLW 129          
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|602715618|ref|XP_007468010.1| (PREDICTED: 60S ribosomal protein L23-like [Lipotes vexillifer])

HSP 1 Score: 131.724 bits (330), Expect = 1.056e-35
Identity = 74/130 (56.92%), Postives = 89/130 (68.46%), Query Frame = 0
Query:    3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGVGHHRPC---GEGMRGPVASYRLQLW 123
            SKRGRGG++ AKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK      +   QR SHR++ G       + GV  +      G  + GPVA     LW
Sbjct:    2 SKRGRGGSSAAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVI--RQRKSHRRKDGVFLYFEDNAGVIVNNKVEMKGSAITGPVAKECADLW 129          
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|585709560|ref|XP_006824374.1| (PREDICTED: 60S ribosomal protein L23-like [Saccoglossus kowalevskii])

HSP 1 Score: 130.568 bits (327), Expect = 1.636e-35
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 0
Query:    3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV-----GHHRPCGEGMRGPVASYRLQLW 123
            SKRGRGG++GAKFR +LGLPV AV+NCADNTGAKNL+II+V G+KGRLNRLP A++GDMVMA+V+KGKPELRKK      + R QR  +R+++G       + GV     G  +  G  + GPVA     LW
Sbjct:    2 SKRGRGGSSGAKFRISLGLPVGAVVNCADNTGAKNLYIISVKGIKGRLNRLPAAAVGDMVMATVKKGKPELRKKV-MPAVIIR-QRKPYRRKEGIVLYFEDNAGVIVNQKGEMK--GSAITGPVAKECADLW 129          
BLAST of EWM26204.1 vs. NCBI_GenBank
Match: gi|41282078|ref|NP_957026.1| (60S ribosomal protein L23 [Danio rerio] >gi|410901665|ref|XP_003964316.1| PREDICTED: 60S ribosomal protein L23 [Takifugu rubripes] >gi|51316654|sp|Q6PC14.1|RL23_DANRE RecName: Full=60S ribosomal protein L23 >gi|37747951|gb|AAH59509.1| Zgc:73149 [Danio rerio] >gi|47216271|emb|CAG05967.1| unnamed protein product, partial [Tetraodon nigroviridis] >gi|51038319|gb|AAT94068.1| ribosomal protein L23 [Sparus aurata] >gi|211827611|gb|AAH49038.2| Zgc:73149 [Danio rerio])

HSP 1 Score: 130.183 bits (326), Expect = 2.055e-35
Identity = 75/132 (56.82%), Postives = 91/132 (68.94%), Query Frame = 0
Query:    3 SKRGRGGTTGAKFRTTLGLPVAAVINCADNTGAKNLHIIAVGGVKGRLNRLPQASLGDMVMASVRKGKPELRKKKRWDFHLFRGQRWSHRQQQG------GDEGV-----GHHRPCGEGMRGPVASYRLQLW 123
            SKRGRGG++GAKFR +LGLPV AVINCADNTGAKNL+II+V G+KGRLNRLP A +GDMVMA+V+KGKPELRKK      +   QR S+R++ G       + GV     G  +  G  + GPVA     LW
Sbjct:    2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIR--QRKSYRRKDGVFLYFEDNAGVIVNNKGEMK--GSAITGPVAKECADLW 129          
The following BLAST results are available for this feature:
BLAST of EWM26204.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108203|gb|EWM26204.1|1.990e-137100.00ribosomal protein l23 [Nannochloropsis gaditana][more]
gi|38571606|gb|AAH62716.1|1.580e-3657.58Ribosomal protein L23 [Homo sapiens] >gi|649122617... [more]
gi|10121725|gb|AAG13342.1|AF266222_15.282e-3657.58ribosomal protein L23 [Gillichthys mirabilis][more]
gi|260794408|ref|XP_002592201.1|6.494e-3657.58hypothetical protein BRAFLDRAFT_123946 [Branchiost... [more]
gi|86355131|dbj|BAE78800.1|6.709e-3658.59ribosomal protein L23 [Pelodiscus sinensis][more]
gi|225705444|gb|ACO08568.1|8.615e-3670.2160S ribosomal protein L23 [Oncorhynchus mykiss][more]
gi|554534477|ref|XP_005861970.1|9.605e-3656.92PREDICTED: 60S ribosomal protein L23 [Myotis brand... [more]
gi|602715618|ref|XP_007468010.1|1.056e-3556.92PREDICTED: 60S ribosomal protein L23-like [Lipotes... [more]
gi|585709560|ref|XP_006824374.1|1.636e-3556.06PREDICTED: 60S ribosomal protein L23-like [Saccogl... [more]
gi|41282078|ref|NP_957026.1|2.055e-3556.8260S ribosomal protein L23 [Danio rerio] >gi|410901... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4436rna4436Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications