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Properties
| Property Name | Value |
|---|
| Product | zinc finger protein |
| Orig transcript id | gnl|cribi|Naga_100001g10.8247.mrna |
| Orig protein id | gnl|cribi|Naga_100001g10.8247 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:855546..857346 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4102 ID=rna4102|Name=rna4102|organism=Nannochloropsis gaditana|type=mRNA|length=1606bp
GATATGATGGAAAACGACCTTTCCATTGAGCCGTCGTGCCCACCACAATT
CGTCGCGAGCATCGAAGGGAACCAGGCACTCGAACGCGACCATCGAATAC
GCCGGCAGCATATACACAGGAAAATATCTTGTTTTTTGCAGGATTGTCGC
TGCGAGGATCGGCTTTCTCTAGCTAGACCTCTCTTCAAGAAAAGTCCACG
ATGGAAGAACAAGCATTTCAAGTGTCAACTATGTCCTCGCAAGCTTACTT
CGGCAAGTGGAATGGTAATTCATGTGACACAGGTACACAAAGAAACGCTA
AAAAAAATACCCGGTGCGAAGGAAGGAAGAGATTCTGTGGATGTAGAAGT
CTTCGGCATGCAGGGTATTCCCATGGAATGCCTCATGGAACGCGCCGCCA
AGAAGCAGAGGACAGGAGGGGATCCAGGGGGCTCTCACGGAGAGGCTAAC
GGTGGAGGAATGCCGGGCTTGCCGCCCGGTATGGGCCCAGGGATGGGTAT
GGGAGCAGGCTTTCCTCCCGGAATGGGAGGCCCTCCGGGACCCAATGGTA
TGTACGGACAGATGCCCAATTTCCCACCGCAGCAAGGAGGAGTCTTTGGC
GGGTACGGCATGGGGGGTTTCCCGCCCAGGCCGATGTCAGGGCCGCCGGG
CATGTTCCCTCCAGCAGGCAGGATGATGATGCCCCATCAAGGGGGAATGC
CTCCGGGCATGTATCCCTTTCCCCCGGGCCAGCAGGCCCCTCAGGGATTC
CCGAGGAGCCAGCCGGGGATGCCGCCCCTCCCTGCCTTGGGATCGGCCCC
CTTGGGGCCGGGCGGGTACGTTCCTGGGCAGCATCAGCAACAGCAACATT
CCACGCAGGAGCCGCGTCACCCCCACCAAGCACCACAACCGTCCCAGCCG
GGGCAATCCTCACCATCGCAACCTCATCATCAACAACACCCGCAGCATTA
CCAACCCCAGCAGCCGCAACCATACCAACAAGGCATACCTCCCATGCCCC
CCGGGCAAGCTCCTCCCCGTCCAGGAGTGTTTCCCCCGGGCCCGCCCCCT
GGTCTGCCCCCAGGCGCCCCCCCTCGGCCCCTCTTCCCTGTTGCTGGCTT
CGCGCCCGCCCCTCCTGCGACCAGCTCCCCTACAGTGTCGGCTGCCCCCT
CCGGGACACAACATCCAGCGACCGAAACGACGGCAGTGGCCACCAAGGAG
ATGAACTTGGTGTACGCAGAGGAGTCAGAGTCCATGGAAGAACGGCGGGC
CAAGCTTCCCAAGTATTTCTACGATGAAAAGGTCGTTCTTGCGGGAAGTG
GGTCTTAAGAACGACGAGTTGAAGCGAGCGGAAAGGGTTGATGTCAGGGG
GCTTGCGGGAGATTGGCACAGGGGAAGAATGAACTTTTCCGCTCAACAGC
AGCTCTTCTTTTTTGAAAAGTCGCCATTTTGTCTCAGGCTTTGCTTCACA
TATGAGACGCCTACACTGGCACTGGTGCTGTGTGCAAATAAAAGGAGGAA
ACCATAAGGTCTGTTCCTTTTTTAACCATGATAAAGCGAGACGATGTCCT
TCGCGCCTCCAACTCGTGAACTGAAGACAGAAAAATCGTTGTATGGACTT
GAGCCA back to topprotein sequence of rna4102 >rna4102-protein ID=rna4102-protein|Name=rna4102|organism=Nannochloropsis gaditana|type=polypeptide|length=426bp
MNIAIPTSFHLILTFISFVWLYQRTLYAMSRKISCFLQDCRCEDRLSLAR
PLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEG
RDSVDVEVFGMQGIPMECLMERAAKKQRTGGDPGGSHGEANGGGMPGLPP
GMGPGMGMGAGFPPGMGGPPGPNGMYGQMPNFPPQQGGVFGGYGMGGFPP
RPMSGPPGMFPPAGRMMMPHQGGMPPGMYPFPPGQQAPQGFPRSQPGMPP
LPALGSAPLGPGGYVPGQHQQQQHSTQEPRHPHQAPQPSQPGQSSPSQPH
HQQHPQHYQPQQPQPYQQGIPPMPPGQAPPRPGVFPPGPPPGLPPGAPPR
PLFPVAGFAPAPPATSSPTVSAAPSGTQHPATETTAVATKEMNLVYAEES
ESMEERRAKLPKYFYDEKVVLAGSGS back to topmRNA from alignment at CM002462.1:855546..857346+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4102 ID=rna4102|Name=rna4102|organism=Nannochloropsis gaditana|type=mRNA|length=1801bp|location=Sequence derived from alignment at CM002462.1:855546..857346+ (Nannochloropsis gaditana)
AGGATAGAGTGAATGTGTGATTGTTTCGGCTATACGGCAGAAGCTGGATG
AACCTGAGGCTCGTCAGCCCTTGAACGTCACTGGAGACCTTCGGGTAGAA
AGTCAGACCCTTGTACCATTTATGAATATAGCCATTCCGACCAGTTTTCA
TTTAATACTAACCTTTATTTCCTTCGTTTGGTTATATCAACGTACTTTAT
ACGCCATGAGCAGGAAAATATCTTGTTTTTTGCAGGATTGTCGCTGCGAG
GATCGGCTTTCTCTAGCTAGACCTCTCTTCAAGAAAAGTCCACGATGGGT
AAGAAAAAGTCAGCCACCAaacgggaggaagcgcccgaCATATGGTGCTA
CTACTGCGATCGCGCCTTTGATGACGAGGctacccttctcctccatcaga
AGAACAAGCATTTCAAGTGTCAACTATGTCCTCGCAAGCTTACTTCGGCA
AGTGGAATGGTAATTCATGTGACACAGGTACACAAAGAAACGCTAAAAAA
AATACCCggtgcgaaggaaggaagagattCTGTGGATGTAGAAGTCTTCG
GCATGCAGGGTATTCCCATGGAATGCCTCATGGAACGCGCCGCCAAGAAG
cagaggacaggaggggatcCAGGGGGCTCTCACGGAGAGGCTAACGGTGG
AGGAATGCCGGGCTTGCCGCCCGGTATGGGCCCAGGGATGGGTATGGGAG
caggctttcctcccggAATGGGAGGCCCTCCGGGACCCAATGGTATGTAC
GGACAGATGCCCAATTTCCCAccgcagcaaggaggagtcTTTGGCGGGTA
CGGCATGGGGGGTTTCCCGCCCAGGCCGATGTCAGGGCCGCCGGGCATGT
TCCCTCCAGCAGGCAGGATGATGATGCCCCATCAAGGGGGAATGCCTCCG
GGCATgtatccctttcccccgggccAGCAGGCCCCTCAGGGATTCCCGAG
GAGCCAGCCGGGGatgccgcccctccctgccttgggATCGGCCCCCTTGG
GGCCGGGCGGGTACGTTCCTGGGCAGcatcagcaacagcaacattCCACG
CAGGAGCCGCGTCACCCCCACCAAGCACCACAACCGTCCCAGCCGGGGCA
ATCCTCACCATCGCAACCTCATCATCAACAACACCCGCAGCATTACCAAC
CCCAGCAGCCGCAACCATACCAACAAGGCATACCTCCCATGCCCCCCGGG
CaagctcctccccgtccaggAGTGTttcccccgggcccgcccCCTGGTCT
GCCCCCAGGCGccccccctcggcccctcttccctgtTGCTGGCttcgcgc
ccgcccctcctgcgACCAGCTCCCCTACAGTGTCGGCTGCCCCCTCCGGG
ACACAACATCCAGCGACCGAAACGACGGCAGTGGCCACCAAGGAGATGAA
CTTGGTGTACGCAGAGGAGTCAGAGTCCATGGAAGAACGGCGGGCCAAGC
TTCCCAAGTATTTCTACGATGAAAAGGTCGTTCTTGCGGGAAGTGGGTCT
TAAGAACGACGAGTTGAAGCGAGCGGAAAGGGTTGATGTCAGGGGGCTTG
CGGGAGATTGGCACAGGGGAAGAATGAACTTTTCCGCTCAACAGCAGCTC
TTCTTTTTTGAAAAGTCGCCATTTTGTCTCAGGCTTTGCTTCACATATGA
GACGCCTACACTGGCACTGGTGCTGTGTGCAAATAAAAGGAGGAAACCAT
AAGGTCTGTTCCTTTTTTAACCATGATAAAGCGAGACGATGTCCTTCGCG
CCTCCAACTCGTGAACTGAAGACAGAAAAATCGTTGTATGGACTTGAGCC
A back to topCoding sequence (CDS) from alignment at CM002462.1:855546..857346+ >rna4102 ID=rna4102|Name=rna4102|organism=Nannochloropsis gaditana|type=CDS|length=2562bp|location=Sequence derived from alignment at CM002462.1:855546..857346+ (Nannochloropsis gaditana)
ATGAATATAGCCATTCCGACCAGTTTTCATTTAATACTAACCTTTATTTC
CTTCGTTTGGTTATATCAACGTACTTTATACGCCATGAGCAGGAAAATAT
CTTGTTTTTTGCAGGATTGTCGCTGCGAGGATCGGCTTTCTCTAGCTAGA
CCTCTCTTCAAGAAAAGTCCACGATGGaAGAACAAGCATTTCAAGTGTCA
ACTATGTCCTCGCAAGCTTACTTCGGCAAGTGGAATGGTAATTCATGTGA
CACAGGTACACAAAGAAACGCTAAAAAAAATACCCggtgcgaaggaagga
agagattCTGTGGATGTAGAAGTCTTCGGCATGCAGGGTATTCCCATGGA
ATGCCTCATGGAACGCGCCGCCAAGAAGcagaggacaggaggggatcCAG
GGGGCTCTCACGGAGAGGCTAACGGTGGAGGAATGCCGGGCTTGCCGCCC
GGTATGGGCCCAGGGATGGGTATGGGAGcaggctttcctcccggAATGGG
AGGCCCTCCGGGACCCAATGGTATGTACGGACAGATGCCCAATTTCCCAc
cgcagcaaggaggagtcTTTGGCGGGTACGGCATGGGGGGTTTCCCGCCC
AGGCCGATGTCAGGGCCGCCGGGCATGTTCCCTCCAGCAGGCAGGATGAT
GATGCCCCATCAAGGGGGAATGCCTCCGGGCATgtatccctttcccccgg
gccAGCAGGCCCCTCAGGGATTCCCGAGGAGCCAGCCGGGGatgccgccc
ctccctgccttgggATCGGCCCCCTTGGGGCCGGGCGGGTACGTTCCTGG
GCAGcatcagcaacagcaacattCCACGCAGGAGCCGCGTCACCCCCACC
AAGCACCACAACCGTCCCAGCCGGGGCAATCCTCACCATCGCAACCTCAT
CATCAACAACACCCGCAGCATTACCAACCCCAGCAGCCGCAACCATACCA
ACAAGGCATACCTCCCATGCCCCCCGGGCaagctcctccccgtccaggAG
TGTttcccccgggcccgcccCCTGGTCTGCCCCCAGGCGccccccctcgg
cccctcttccctgtTGCTGGCttcgcgcccgcccctcctgcgACCAGCTC
CCCTACAGTGTCGGCTGCCCCCTCCGGGACACAACATCCAGCGACCGAAA
CGACGGCAGTGGCCACCAAGGAGATGAACTTGGTGTACGCAGAGGAGTCA
GAGTCCATGGAAGAACGGCGGGCCAAGCTTCCCAAGTATTTCTACGATGA
AAAGGTCGTTCTTGCGGGAAGTGGGTCTTAAATGAATATAGCCATTCCGA
CCAGTTTTCATTTAATACTAACCTTTATTTCCTTCGTTTGGTTATATCAA
CGTACTTTATACGCCATGAGCAGGAAAATATCTTGTTTTTTGCAGGATTG
TCGCTGCGAGGATCGGCTTTCTCTAGCTAGACCTCTCTTCAAGAAAAGTC
CACGATGGaAGAACAAGCATTTCAAGTGTCAACTATGTCCTCGCAAGCTT
ACTTCGGCAAGTGGAATGGTAATTCATGTGACACAGGTACACAAAGAAAC
GCTAAAAAAAATACCCggtgcgaaggaaggaagagattCTGTGGATGTAG
AAGTCTTCGGCATGCAGGGTATTCCCATGGAATGCCTCATGGAACGCGCC
GCCAAGAAGcagaggacaggaggggatcCAGGGGGCTCTCACGGAGAGGC
TAACGGTGGAGGAATGCCGGGCTTGCCGCCCGGTATGGGCCCAGGGATGG
GTATGGGAGcaggctttcctcccggAATGGGAGGCCCTCCGGGACCCAAT
GGTATGTACGGACAGATGCCCAATTTCCCAccgcagcaaggaggagtcTT
TGGCGGGTACGGCATGGGGGGTTTCCCGCCCAGGCCGATGTCAGGGCCGC
CGGGCATGTTCCCTCCAGCAGGCAGGATGATGATGCCCCATCAAGGGGGA
ATGCCTCCGGGCATgtatccctttcccccgggccAGCAGGCCCCTCAGGG
ATTCCCGAGGAGCCAGCCGGGGatgccgcccctccctgccttgggATCGG
CCCCCTTGGGGCCGGGCGGGTACGTTCCTGGGCAGcatcagcaacagcaa
cattCCACGCAGGAGCCGCGTCACCCCCACCAAGCACCACAACCGTCCCA
GCCGGGGCAATCCTCACCATCGCAACCTCATCATCAACAACACCCGCAGC
ATTACCAACCCCAGCAGCCGCAACCATACCAACAAGGCATACCTCCCATG
CCCCCCGGGCaagctcctccccgtccaggAGTGTttcccccgggcccgcc
cCCTGGTCTGCCCCCAGGCGccccccctcggcccctcttccctgtTGCTG
GCttcgcgcccgcccctcctgcgACCAGCTCCCCTACAGTGTCGGCTGCC
CCCTCCGGGACACAACATCCAGCGACCGAAACGACGGCAGTGGCCACCAA
GGAGATGAACTTGGTGTACGCAGAGGAGTCAGAGTCCATGGAAGAACGGC
GGGCCAAGCTTCCCAAGTATTTCTACGATGAAAAGGTCGTTCTTGCGGGA
AGTGGGTCTTAA back to top
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