EWM26736.1, cds4092 (CDS) Nannochloropsis gaditana

Overview
NameEWM26736.1
Unique Namecds4092
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:855667..855843 +
Alignment locationCM002462.1:855945..857048 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26736.1
Productzinc finger protein
Orig transcript idgnl|cribi|Naga_100001g10.8247.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:855667..855843 +
CM002462.1supercontigCM002462.1:855945..857048 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR007087Znf_C2H2
Homology
BLAST of EWM26736.1 vs. NCBI_GenBank
Match: gi|585108824|gb|EWM26736.1| (zinc finger protein [Nannochloropsis gaditana])

HSP 1 Score: 836.254 bits (2159), Expect = 0.000e+0
Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 0
Query:    1 MNIAIPTSFHLILTFISFVWLYQRTLYAMSRKISCFLQDCRCEDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMERAAKKQRTGGDPGGSHGEANGGGMPGLPPGMGPGMGMGAGFPPGMGGPPGPNGMYGQMPNFPPQQGGVFGGYGMGGFPPRPMSGPPGMFPPAGRMMMPHQGGMPPGMYPFPPGQQAPQGFPRSQPGMPPLPALGSAPLGPGGYVPGQHQQQQHSTQEPRHPHQAPQPSQPGQSSPSQPHHQQHPQHYQPQQPQPYQQGIPPMPPGQAPPRPGVFPPGPPPGLPPGAPPRPLFPVAGFAPAPPATSSPTVSAAPSGTQHPATETTAVATKEMNLVYAEESESMEERRAKLPKYFYDEKVVLAGSGS 426
            MNIAIPTSFHLILTFISFVWLYQRTLYAMSRKISCFLQDCRCEDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMERAAKKQRTGGDPGGSHGEANGGGMPGLPPGMGPGMGMGAGFPPGMGGPPGPNGMYGQMPNFPPQQGGVFGGYGMGGFPPRPMSGPPGMFPPAGRMMMPHQGGMPPGMYPFPPGQQAPQGFPRSQPGMPPLPALGSAPLGPGGYVPGQHQQQQHSTQEPRHPHQAPQPSQPGQSSPSQPHHQQHPQHYQPQQPQPYQQGIPPMPPGQAPPRPGVFPPGPPPGLPPGAPPRPLFPVAGFAPAPPATSSPTVSAAPSGTQHPATETTAVATKEMNLVYAEESESMEERRAKLPKYFYDEKVVLAGSGS
Sbjct:    1 MNIAIPTSFHLILTFISFVWLYQRTLYAMSRKISCFLQDCRCEDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMERAAKKQRTGGDPGGSHGEANGGGMPGLPPGMGPGMGMGAGFPPGMGGPPGPNGMYGQMPNFPPQQGGVFGGYGMGGFPPRPMSGPPGMFPPAGRMMMPHQGGMPPGMYPFPPGQQAPQGFPRSQPGMPPLPALGSAPLGPGGYVPGQHQQQQHSTQEPRHPHQAPQPSQPGQSSPSQPHHQQHPQHYQPQQPQPYQQGIPPMPPGQAPPRPGVFPPGPPPGLPPGAPPRPLFPVAGFAPAPPATSSPTVSAAPSGTQHPATETTAVATKEMNLVYAEESESMEERRAKLPKYFYDEKVVLAGSGS 426          
BLAST of EWM26736.1 vs. NCBI_GenBank
Match: gi|585108823|gb|EWM26735.1| (zinc finger protein [Nannochloropsis gaditana])

HSP 1 Score: 773.081 bits (1995), Expect = 0.000e+0
Identity = 396/398 (99.50%), Postives = 397/398 (99.75%), Query Frame = 0
Query:   29 MSRKISCFLQDCRCEDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMERAAKKQRTGGDPGGSHGEANGGGMPGLPPGMGPGMGMGAGFPPGMGGPPGPNGMYGQMPNFPPQQGGVFGGYGMGGFPPRPMSGPPGMFPPAGRMMMPHQGGMPPGMYPFPPGQQAPQGFPRSQPGMPPLPALGSAPLGPGGYVPGQHQQQQHSTQEPRHPHQAPQPSQPGQSSPSQPHHQQHPQHYQPQQPQPYQQGIPPMPPGQAPPRPGVFPPGPPPGLPPGAPPRPLFPVAGFAPAPPATSSPTVSAAPSGTQHPATETTAVATKEMNLVYAEESESMEERRAKLPKYFYDEKVVLAGSGS 426
            + RKISCFLQDCRCEDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMERAAKKQRTGGDPGGSHGEANGGGMPGLPPGMGPGMGMGAGFPPGMGGPPGPNGMYGQMPNFPPQQGGVFGGYGMGGFPPRPMSGPPGMFPPAGRMMMPHQGGMPPGMYPFPPGQQAPQGFPRSQPGMPPLPALGSAPLGPGGYVPGQHQQQQHSTQEPRHPHQAPQPSQPGQSSPSQPHHQQHPQHYQPQQPQPYQQGIPPMPPGQAPPRPGVFPPGPPPGLPPGAPPRPLFPVAGFAPAPPATSSPTVSAAPSGTQHPATETTAVATKEMNLVYAEESESMEERRAKLPKYFYDEKVVLAGSGS
Sbjct:   37 IHRKISCFLQDCRCEDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMERAAKKQRTGGDPGGSHGEANGGGMPGLPPGMGPGMGMGAGFPPGMGGPPGPNGMYGQMPNFPPQQGGVFGGYGMGGFPPRPMSGPPGMFPPAGRMMMPHQGGMPPGMYPFPPGQQAPQGFPRSQPGMPPLPALGSAPLGPGGYVPGQHQQQQHSTQEPRHPHQAPQPSQPGQSSPSQPHHQQHPQHYQPQQPQPYQQGIPPMPPGQAPPRPGVFPPGPPPGLPPGAPPRPLFPVAGFAPAPPATSSPTVSAAPSGTQHPATETTAVATKEMNLVYAEESESMEERRAKLPKYFYDEKVVLAGSGS 434          
BLAST of EWM26736.1 vs. NCBI_GenBank
Match: gi|831754062|ref|XP_012748001.1| (hypothetical protein SAMD00019534_121710 [Acytostelium subglobosum LB1] >gi|735848830|dbj|GAM28995.1| hypothetical protein SAMD00019534_121710 [Acytostelium subglobosum LB1])

HSP 1 Score: 95.9005 bits (237), Expect = 3.067e-18
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 0
Query:   42 CEDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMERAAKKQRT 129
            CE      + L +     K +HFKC  C RKL SASGMV+HV  VHKE L K+P +K GR+SV+ E++GM+GIP +  +ERA K+QRT
Sbjct:   16 CERTFDDEKILIQHQ---KARHFKCTHCNRKLASASGMVVHVQTVHKEVLTKVPNSKPGRESVEFEIYGMEGIPDDEELERADKRQRT 100          
BLAST of EWM26736.1 vs. NCBI_GenBank
Match: gi|1183343831|gb|ORX72722.1| (hypothetical protein DL89DRAFT_232534 [Linderina pennispora])

HSP 1 Score: 95.1301 bits (235), Expect = 8.033e-18
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0
Query:   60 KNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMERAAKKQRTGGDP-------GGSHGEANGGG 144
            K KHFKCQ+C ++L SA+GM IHV QVHKE +K +P A  GRD+ D+E+FG  GIP   L+E   + +   G+P         +HG ++GGG
Sbjct:   33 KAKHFKCQICQKRLNSANGMAIHVAQVHKENIKSVPNALPGRDTTDIEIFGSSGIPERDLLEHERQVRERLGEPYTKRPRHNSNHGHSHGGG 124          
BLAST of EWM26736.1 vs. NCBI_GenBank
Match: gi|470262011|ref|XP_004360552.1| (hypothetical protein DFA_04831 [Dictyostelium fasciculatum] >gi|328874336|gb|EGG22701.1| hypothetical protein DFA_04831 [Dictyostelium fasciculatum])

HSP 1 Score: 88.9669 bits (219), Expect = 7.001e-16
Identity = 46/99 (46.46%), Postives = 59/99 (59.60%), Query Frame = 0
Query:   35 CFLQDCRCEDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIP--MECLMERAAKKQRTGG 131
            C+  D   ED   L +         K KHFKC  C RKL SASGMV+HV  VHKE L K+P +K GRDSV+ E++GM+GIP   E + +R  K+ +  G
Sbjct:   12 CWYCDRTFEDEKILIQ-------HQKAKHFKCPHCNRKLASASGMVVHVQTVHKEVLTKVPNSKPGRDSVEYEIYGMEGIPDETESIDDRDIKRVKQDG 103          
BLAST of EWM26736.1 vs. NCBI_GenBank
Match: gi|1001615219|gb|KXS18966.1| (hypothetical protein M427DRAFT_132460 [Gonapodya prolifera JEL478])

HSP 1 Score: 85.5001 bits (210), Expect = 9.278e-15
Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 0
Query:   35 CFLQDCRCEDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMERAAKKQRTGGDPGGSHGEANGGGMPGLPPGMGPGMG 157
            C+  D   ED   L +         K KHFKC  C ++L +A G+ +H+TQVHK  L KI     GRDS D+E+FGM+G+P E L +    ++  GG   G   + +G   PG+PP M  G+G
Sbjct:   15 CWYCDREFEDEKVLIQ-------HQKAKHFKCNQCNKRLNTAGGLGVHMTQVHKANLTKIENTLAGRDSPDIEIFGMEGVPEEDLAKHL--EEIEGGSGNGLDLKRDGAAFPGMPP-MAFGLG 127          
BLAST of EWM26736.1 vs. NCBI_GenBank
Match: gi|672821799|gb|KFH66694.1| (hypothetical protein MVEG_07219 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 85.1149 bits (209), Expect = 2.999e-14
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0
Query:   42 CEDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMERAAKKQ 127
            CE      + L       + KHFKC  C +KL +A GM +HV QVHKET+  +P A  GR++VD+E++GM+GIP E ++   AK+ 
Sbjct:   17 CERDFEDEKVLISHQ---RAKHFKCTRCSKKLNTAGGMRVHVVQVHKETINAVPNAMPGRETVDLEIYGMEGIPEEDMIAYMAKQD 99          
BLAST of EWM26736.1 vs. NCBI_GenBank
Match: gi|1108959801|ref|XP_019146225.1| (BUB3-interacting and GLEBS motif-containing protein ZNF207 isoform X3 [Corvus cornix cornix])

HSP 1 Score: 82.8037 bits (203), Expect = 1.683e-13
Identity = 37/113 (32.74%), Postives = 63/113 (55.75%), Query Frame = 0
Query:   12 ILTFISFVWLYQRTLYAMSRKISCFLQDCR--CEDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMER 122
            I   +  + L +++L  ++  ++ F + C    +D   L +         K KHFKC +C +KL +  G+ IH  QVHKET+  +P A  GR  +++E++GM+GIP + + ER
Sbjct:   10 ITLVLIILVLSRKSLLGLNVSLTVFNRYCNRDFDDEKILIQ-------HQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMEER 115          
BLAST of EWM26736.1 vs. NCBI_GenBank
Match: gi|929494948|ref|XP_005490511.2| (PREDICTED: BUB3-interacting and GLEBS motif-containing protein ZNF207 isoform X1 [Zonotrichia albicollis] >gi|929494953|ref|XP_014124936.1| PREDICTED: BUB3-interacting and GLEBS motif-containing protein ZNF207 isoform X1 [Zonotrichia albicollis])

HSP 1 Score: 80.8777 bits (198), Expect = 7.427e-13
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 0
Query:   15 FISFVWLYQRTLYAMSRKISCFLQDCR--CEDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMER 122
             I+ V + +R+L  ++  ++ F + C    +D   L +         K KHFKC +C +KL +  G+ IH  QVHKET+  +P A  GR  +++E++GM+GIP + + ER
Sbjct:    2 LITLV-VSKRSLPVLNVSLTVFNRYCNRDFDDEKILIQ-------HQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMEER 103          
BLAST of EWM26736.1 vs. NCBI_GenBank
Match: gi|957847227|ref|XP_014674093.1| (PREDICTED: BUB3-interacting and GLEBS motif-containing protein ZNF207-like [Priapulus caudatus])

HSP 1 Score: 78.5666 bits (192), Expect = 3.868e-12
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 0
Query:   60 KNKHFKCQLCPRKLTSASGMVIHVTQVHKETLKKIPGAKEGRDSVDVEVFGMQGIPMECLMERAAKKQ 127
            K KHFKC  C +KL +  G+ IH  QVHK+T+ ++P A  GR ++D+E++GM+GIP E L      KQ
Sbjct:   31 KAKHFKCHTCHKKLYTGPGLAIHCMQVHKDTIDQVPNAITGRTNIDIEIYGMEGIPEEDLKSHETDKQ 98          
The following BLAST results are available for this feature:
BLAST of EWM26736.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108824|gb|EWM26736.1|0.000e+0100.00zinc finger protein [Nannochloropsis gaditana][more]
gi|585108823|gb|EWM26735.1|0.000e+099.50zinc finger protein [Nannochloropsis gaditana][more]
gi|831754062|ref|XP_012748001.1|3.067e-1851.14hypothetical protein SAMD00019534_121710 [Acytoste... [more]
gi|1183343831|gb|ORX72722.1|8.033e-1846.74hypothetical protein DL89DRAFT_232534 [Linderina p... [more]
gi|470262011|ref|XP_004360552.1|7.001e-1646.46hypothetical protein DFA_04831 [Dictyostelium fasc... [more]
gi|1001615219|gb|KXS18966.1|9.278e-1539.02hypothetical protein M427DRAFT_132460 [Gonapodya p... [more]
gi|672821799|gb|KFH66694.1|2.999e-1443.02hypothetical protein MVEG_07219 [Mortierella verti... [more]
gi|1108959801|ref|XP_019146225.1|1.683e-1332.74BUB3-interacting and GLEBS motif-containing protei... [more]
gi|929494948|ref|XP_005490511.2|7.427e-1334.55PREDICTED: BUB3-interacting and GLEBS motif-contai... [more]
gi|957847227|ref|XP_014674093.1|3.868e-1247.06PREDICTED: BUB3-interacting and GLEBS motif-contai... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4102rna4102Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications