rna4094, rna4094 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4094
Unique Name	rna4094
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3588
Alignment location	CM002462.1:835967..838109 +

Link to JBrowse

Properties


Property Name	Value
Product	Nucleic acid-binding protein
Orig transcript id	gnl\|cribi\|Naga_100001g18.8257.mrna
Orig protein id	gnl\|cribi\|Naga_100001g18.8257
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:835967..838109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g18	gene3940	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4094	rna4094-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26746.1	cds4084	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:835967..838109+
coding sequence from alignment at CM002462.1:835967..838109+

mRNA sequence

>rna4094 ID=rna4094|Name=rna4094|organism=Nannochloropsis gaditana|type=mRNA|length=3588bp
ATGTGTCGCCCGCATCGAGCCGTTGAAGCCGTTCCGCTCCAGTATCATAC
GATCTCCTTACAGCCCCGACTTGTCCAACCCCCTACACGACAATCACACG
AAGAAAATAGAATGGCAACGCTACCGGACTTTAAGATCCATCTTAACGAG
GAAGAGGGGGACAGTGCTATTGCAGCGGAAGCCTGCCATATGCTAAAACT
GATCAATAACTACCGCACCAAGCTTATTCCACCTTACCAGTCGCAGTTTC
GAGTAGTTGCAGTCATCGTCTACAAAAATGGTCAAGGAGACATCAACCAT
GTTTGTGGGACAAACTCTGAGCCTTGCATGATCAGTGGAAGCATTTGTGC
GGAGCGTGCAGCCTTGGCAGCTCTCCGACACGTGCCTCCCCCCGTGACGC
TCCTGCGCCTTTACGTGGTCAGTGATCAGACCCACGAGGCCCTATTCCCG
GGCATCCTATGCAAAGAATTTTTAAGTAGTATGGCTGGAGATGACCTGCG
CATTCTTGTGGCCAATGCCGGCACAACAGATATCCGATGCCTGACGCTTG
GTGCACTTTACCCCTACGCATCCTTGTATCGACACACTGATCGAAATAAA
TTGGTGGTAACTGGTGAAGCTTTTATCGCTAAAGGAATGGAAATCCCACA
GAACGATGGGCCTGAGGAGAAATTATACCGTGAAGTGCTTGATTCGACGG
CAAGAGACGACAAAGACGAGCTGCATCCCATCCGTTATGCGGCAGGAGTT
CGATTTGCTGATGGCATTCAAGTGGTAGCCTGGCAAAAAAAAGGGCTAGA
ATACGGCACAACTATCGATGCTGTGGTGCAGCTGGCCCATGCCATGGAGT
GGCGCAGAGGACAAGGCTTACCAGGGCCAATCCTCTTACTGCAGAGCGAC
CAATTTGGGATCCTTCACGCTCCTTCTGGCCATGCTCGTGGTTTTTTAAT
GGAGTACGATTATGGAGATTTGCCCTTACTTGTCCACGAGACAAGCTCGG
GCAAGCTGCTCACTCTTACCGTCAGCGAGACCGCGCCCGAGCGTCCAATA
ATAAATTTTGAGAGCAGGACGAGGAAAGAGGACAAGGGATGGAGAGTGGA
TGAATTTCCTTCGTTTAACTCCCTTATAGCGAGGACACAGCTCATCAGCC
CCGATATGTCAAAGTTGAACTCCCCAGGCGTGGCTTCGTTCTTGCTATTC
CTAGCCCTTTTTGCGTATCGAGTTTTAAATGCTTGGACCGTCAAGACCTA
CTTCAATCCGGACGAATACTGGCAAGGTCCCGAAGTGGCGCACAAGCTAG
TCTTCGGATCTGGATTGCTGACATGGGAATGGGAATCAGAACGCATCCGT
TCGTTCATCCACCCGTTGCTCTTTGCGGTCTTTTACGCCCTGCTAAAAGT
TACCAACCTAGCGTCGCGCGGGGCAGTGGCCTACGGACCCTCCATGGTTG
TTCAAGCTTTCCTTACGGCCAGCACGGATTTGCATGTGTACTGGCTAGCA
AAGCGTGTCATGATGCATGGTAGTGGTGATGGAGACGATGCAATCGCAAG
GGCCGAGACAATTGCCCGTTGTGCCCTGTTTTGTCAGTGTTCCAACTGGT
TCATGTGGTATGCCGGTGTGCGCACTTTTTCTTCCTCTTTGGAAATGGCA
CTTCTCGTCCCCGCTGTGTACCACTGGGTAGCGCTTGTCGAAAGAGCGGA
AAGTATCGAAGGAGGAAATCGAAAATCTCCCCGGTACCTGCCTCCGTCCC
GCGTGGGGATGACAGAACCCTTGTCCATAGTGCTGGGCACCGTCTCCATC
ATGGTTCGCCCCACCGCTCTTTTCGCCTGGGTTCCTCTGGGTTTTTGGAG
GCTCTCTTGTACTCGGCTGTACGATATTCCCCAGTACTTGCTCCGGGTGG
TACTGTTTTGGACTGTTCTGGTCATGCTTGTCAGCACCCTGCTGGACTCC
TACTGCTACAACCGTGTGTCCGTCCTCGACCAGGCCAGAAACGCAGGCCC
TGGCGCCCATCCCACTGCATCGACTGTACCGCAATGGGAGTGGGTCTTCA
CACCTATCAATTTTTTGCGGATTAACTTGGTGGCTGGCGTTGCTGTCCAA
TACGGCTCTCACCCCTTTCACTGGTACTTTACCCTCGGCGCCCTCACTGT
CCTTACCACCCAACTACCGTTTGTCCTGTTCGGCCTTCGCCGCGCCCTCT
GCCGAAACCGTTTCTTCGTGTGGTCACCCTTTTCCGTGGTCGAGTTTCGT
CCTACAGCCTTGTGCCTGCTCGCCTTGGTCGTCCTTACCTATCCTCTCGG
CCTCTCCCTCTCCCCTCACAAGGAGTTCCGCTTCCTCCTTCCCGTCCTAC
CTTTTGCCCACGTTCTAGCTGGTGTAGTCATTTCCGAGCAGATGATGTTT
CCCCGACATGAAATTGTTGCCCGGTCTTGCGGTGTGGCGGAGACCAAAAT
TAGCGCCGCTCCCCGGAGATGGAGGGGGGAAAGGAAACCACGGTTCTTCC
TTTTATCCATCCTCTTCCTCGCCACCACTCACGCACCGATGGCCTTTTAT
TTTTCCCAGATCCACCAAAGAGGGCCGATAGACGTCATGCAATTCCTCTC
CAGCCTCTTGGCGGAGGACGCCAAAGGGATGGGGCGGGGAGCGACGAGGG
AGACGGGGCAGCACGCGGGAAGTGAGGGAGAAGGAGGAGGAGGAGGGGGC
GGAAGGGGCCGTCCCGAAGTGGTGATCGACTTTCTCATGCCTTGCCATGC
AACGCCGTGGACTACCCACCTGCACGTCCCGGCCTACTTTATGTCGTCAA
GCCCTCCCATCTGCGCAGATAATGTTGCTCCTTCCTCCTTCCTTGGCCTT
TCTTCTTACCTTTTCCCAACTTTCCTGCTTCCCCCCTCCATCTCCTCCGC
TTCAACCCCCTCGACATCAATCGTTCCCCCTCCTCGACTCCTCCTCAGGC
ATCTGGACTGCCCGCCAGTGCTCCGCCCCAACACGCCTAGGCCGAATCCA
ACCGAAGCATTCCTCATCGACCCCCTAGGGTACGCCATGGAGCGGTACTC
TAACGTCATCAACGGCGCCTCAAGAGGCATCAGTCCATATGTAAATGCTA
AAAGCGACGACGGCGACGACTGTCGCATAGAGCGGGAGGCAGATTCCTCA
TCACCCCCGATCTCTTCCCCTTCGCTTCCCGACTACATCGTTACATTTGG
CTCAGCCGCGAGGGAACTCGAGTCATATCTCATCATCCATAAAGGGTACG
AAATTAAAGCATCGTTGTTCCATTCCTCCTTCCGAGGGGATATGGATAGC
CCTCGCCATGAAGATAGCATTGTTGTTTTTGGTCTCAATCAAAGCGTGCG
CACATGAGCTTGTCTCTCTCGATTCGGGGCATCCGATCAATAGGACTGAA
TTTTCGCCAAGCAAGAGGAATGGAAAATGTGACCCATTGGCGCAGTGGTT
AAAATTGTGAAGGGGGAGTGAGCAAGCGAGGCACGTTGGCGTGAAGCTAA
CAAGGGAGAGAGGATGATCGTTACACAAATGTACATACATTCCGGCCGCA
AGCACGGAAAAATCAAAAAAGTTGCATACGGTCCGAAT

protein sequence of rna4094

>rna4094-protein ID=rna4094-protein|Name=rna4094|organism=Nannochloropsis gaditana|type=polypeptide|length=457bp
MHPRMIRIAMFLAAATLNYGDSFVYQSTRTLSMRIPYETPWRRHTKVPVA
RPGVHALSSLRVNQHLSGTVISLYEGTGHRKLFVDVGVTRTDVRGRHFPV
FGMVRLQGPYQNKTYTYGQQVQDLYVRAVFPEPARLFLSLTPVYKRPVSD
GTGEPLPVHRLQDLKVGMPLLNATVVSLTDNYCFLDAGVVRGQTEAEQAK
MMHDGGKGGEKGTPRRRLRHPKPRPLMGRLYRGDLLEQYALTDKFRTATT
KAVLTPGMSLPVYVKGVHLDSWQYSLTVDPEMTEEKAAALKEERKAQLKA
QASKQPVDALLIGESRKGVITKILPGGVKVGIGVKITGFVPLDSVSEAYG
EEIKDLSRVLVVGGRLQVEVDEVSDDGKRIDLRCLEIFPQVGSTKKTVGK
AGKADQASGRRKESVGEGAKKGEQKRMSNPSYDDDDDDDDYGGDEDDYDR
LGYDDEW

mRNA from alignment at CM002462.1:835967..838109+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4094 ID=rna4094|Name=rna4094|organism=Nannochloropsis gaditana|type=mRNA|length=2143bp|location=Sequence derived from alignment at CM002462.1:835967..838109+ (Nannochloropsis gaditana)
ACAAGTCGGGGCTGTAAGGAGATCGTATGATACTGGAGCGGAACGGCTTC
AACGGCTCGATGCGGGCGACACATATACGCACAAACTTTTCTATAATATT
ATTCTTTATGTTGTGCTTACATGGAGGTTTTACATTTTTGCATCAATCAT
CTCATTTTCAGGATTGAAGGCTGTCGTACACTACCATCGGAGCTCAACAG
GAACCACGGTTCTTGCCAGGGTGGGTTTCGGGTCtgcgggagaggacggg
aggttGGCCTTCAGAAATGCATCCCAGAATGATAAGAATTGCCATGTTTT
TGGCGGCTGCGACCCTTAACTACGGGGATTCATTTGTCTATCAGTCAACA
AGGACATTGAGCATGCGCATACCATATGAAACACCGTGGCGGCGTCACAC
GAAAGTACCCGTGGCCAGACCTGGGGTCCATGCTCTATCTTCCCTACGCG
TCAATCAACATCTTTCCGGCACTGTCATCAGCTTGTACGAAGGAACGGGG
CACCGCAAGCTTTTCGTTGATGTTGGGGTCACGCGTACGGATGTGCGTGG
CAGGCACTTTCCAGTTTTTGGGATGGTTCGGCTGCAAGGACCGTATCAAA
ACAAGACGTACACGTATGGTCAGCAGGTGCAGGACCTGTACGTGCGGGCA
GTCTTCCCAGAACCCGCACGCTTGTTCCTCAGTCTGACGCCTGTTTACAA
ACGGCCAGTCTCAGACGGGACGGGAGAGCCATTGCCTGTGCATCGATTGC
AAGATTTGAAGGTAGGGATGCCACTCTTAAACGCGACAGTGGTAAGTCTC
ACAGACAACTACTGCTTCCTCGACGCCGGGGTCGTTCGGGGCCAGACAGA
GGCGGAGCAGGCAAAAATGATGCATGATGGAGGCAAGGGTGGCGAGAAAG
GGACGCCGCGTCGGAGATTGAGGCATCCCAAGCCCCGACCTTTGATGGGC
CGGCTCTACAGGGGCGATTTGCTCGAGCAATACGCCCTGACCGACAAGTT
CAGGACCGCTACCACCAAGGCGGTCCTGACCCCTGGAATGTCGCTGCCAG
TGTATGTGAAAGGCGTGCATCTCGACTCCTGGCAGTACAGCTTGACCGTG
GACCCGGAAATgacagaggagaaggcagcggcgctcaaggaggagaggaa
ggcgcaaCTGAAGGCCCAAGCGTCCAAGCAGCCTGTGGACGCTCTATTGA
TAGGGGAGTCGCGCAAGGGCGTGATAACAAAAATACTTCCCGGAGGGGTG
AAAGTGGGGATTGGTGTGAAAATCACGGGATTCGTCCCGCTAGACTCAGT
ATCCGAGGCCTATGGGGAAGAGATCAAGGACCTTAGCCGCGTCCTTGtgg
taggagggaggttgcAGGTAGAGGTAGATGAAGTGTCCGACGACGGAAAG
AGAATCGATTTGCGTTGCTTGGAAATATTTCCTCAGGTGGGGTCGACGAA
AAAAACAGTTggcaaggcgggaaaggccGATCAGGCATCGGGTAGACGGA
AAGAGTCAGTCGGTGAAGGAGCAAAGAAGGGCGAACAAAAACGGATGTCC
AATCCTTCgtatgatgatgatgacgacgatgatgaCTACGGGGGTGACGA
GGATGACTACGATCGGCTTGGGTACGACGACGAGTGGTAGGGGAGGCGAG
gtgaggcaaggaaggacAAGCTACGAACATTTCATACACTACCATGAGGA
AGACAAAGCGTGTAATCAAAGGGGTCCTAGAAAAATTAAAATGAAAGTAT
ACGTGTGACTGAAAGACttgagagagagagatgcTCTCCACTCGTCGAGG
CAGCGCGAGCCTCCTTCGCGCCAGCACAGAAAGCCCTCTGGCCAGGTATT
GAACACGGCGAGCCTGGTTCTACGCGACCTTCTCTCTGTGAAAATTGCCA
TATCTTTTTATGGAAGCCACCATAAGGATGGGAgctagaaaaggagggag
aaagaataGAGGCGAAGGCACGAGCGTGCGGGTAGGGCGCCGGTCCGACA
ACATGCATAGTCCTTGCTTACAAATTATCTCTGCGCGGACACTAAGACTC
AGCAACGAAAGTGACACGCCTACTGCGTCCCACTCGGTCCAGGAAATTTA
CTCGAGACAAAAGGAATATAATGATCTAGGAAGCCTCCGTGGT

Coding sequence (CDS) from alignment at CM002462.1:835967..838109+

>rna4094 ID=rna4094|Name=rna4094|organism=Nannochloropsis gaditana|type=CDS|length=1374bp|location=Sequence derived from alignment at CM002462.1:835967..838109+ (Nannochloropsis gaditana)
ATGCATCCCAGAATGATAAGAATTGCCATGTTTTTGGCGGCTGCGACCCT
TAACTACGGGGATTCATTTGTCTATCAGTCAACAAGGACATTGAGCATGC
GCATACCATATGAAACACCGTGGCGGCGTCACACGAAAGTACCCGTGGCC
AGACCTGGGGTCCATGCTCTATCTTCCCTACGCGTCAATCAACATCTTTC
CGGCACTGTCATCAGCTTGTACGAAGGAACGGGGCACCGCAAGCTTTTCG
TTGATGTTGGGGTCACGCGTACGGATGTGCGTGGCAGGCACTTTCCAGTT
TTTGGGATGGTTCGGCTGCAAGGACCGTATCAAAACAAGACGTACACGTA
TGGTCAGCAGGTGCAGGACCTGTACGTGCGGGCAGTCTTCCCAGAACCCG
CACGCTTGTTCCTCAGTCTGACGCCTGTTTACAAACGGCCAGTCTCAGAC
GGGACGGGAGAGCCATTGCCTGTGCATCGATTGCAAGATTTGAAGGTAGG
GATGCCACTCTTAAACGCGACAGTGGTAAGTCTCACAGACAACTACTGCT
TCCTCGACGCCGGGGTCGTTCGGGGCCAGACAGAGGCGGAGCAGGCAAAA
ATGATGCATGATGGAGGCAAGGGTGGCGAGAAAGGGACGCCGCGTCGGAG
ATTGAGGCATCCCAAGCCCCGACCTTTGATGGGCCGGCTCTACAGGGGCG
ATTTGCTCGAGCAATACGCCCTGACCGACAAGTTCAGGACCGCTACCACC
AAGGCGGTCCTGACCCCTGGAATGTCGCTGCCAGTGTATGTGAAAGGCGT
GCATCTCGACTCCTGGCAGTACAGCTTGACCGTGGACCCGGAAATgacag
aggagaaggcagcggcgctcaaggaggagaggaaggcgcaaCTGAAGGCC
CAAGCGTCCAAGCAGCCTGTGGACGCTCTATTGATAGGGGAGTCGCGCAA
GGGCGTGATAACAAAAATACTTCCCGGAGGGGTGAAAGTGGGGATTGGTG
TGAAAATCACGGGATTCGTCCCGCTAGACTCAGTATCCGAGGCCTATGGG
GAAGAGATCAAGGACCTTAGCCGCGTCCTTGtggtaggagggaggttgcA
GGTAGAGGTAGATGAAGTGTCCGACGACGGAAAGAGAATCGATTTGCGTT
GCTTGGAAATATTTCCTCAGGTGGGGTCGACGAAAAAAACAGTTggcaag
gcgggaaaggccGATCAGGCATCGGGTAGACGGAAAGAGTCAGTCGGTGA
AGGAGCAAAGAAGGGCGAACAAAAACGGATGTCCAATCCTTCgtatgatg
atgatgacgacgatgatgaCTACGGGGGTGACGAGGATGACTACGATCGG
CTTGGGTACGACGACGAGTGGTAG

Synonyms

Publications