EWM26746.1, cds4084 (CDS) Nannochloropsis gaditana

Overview
NameEWM26746.1
Unique Namecds4084
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:836233..837606 +

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Properties
Property NameValue
Protein idEWM26746.1
ProductNucleic acid-binding protein
Orig transcript idgnl|cribi|Naga_100001g18.8257.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:836233..837606 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR022967S1_dom
Homology
BLAST of EWM26746.1 vs. NCBI_GenBank
Match: gi|585108834|gb|EWM26746.1| (Nucleic acid-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 931.398 bits (2406), Expect = 0.000e+0
Identity = 457/457 (100.00%), Postives = 457/457 (100.00%), Query Frame = 0
Query:    1 MHPRMIRIAMFLAAATLNYGDSFVYQSTRTLSMRIPYETPWRRHTKVPVARPGVHALSSLRVNQHLSGTVISLYEGTGHRKLFVDVGVTRTDVRGRHFPVFGMVRLQGPYQNKTYTYGQQVQDLYVRAVFPEPARLFLSLTPVYKRPVSDGTGEPLPVHRLQDLKVGMPLLNATVVSLTDNYCFLDAGVVRGQTEAEQAKMMHDGGKGGEKGTPRRRLRHPKPRPLMGRLYRGDLLEQYALTDKFRTATTKAVLTPGMSLPVYVKGVHLDSWQYSLTVDPEMTEEKAAALKEERKAQLKAQASKQPVDALLIGESRKGVITKILPGGVKVGIGVKITGFVPLDSVSEAYGEEIKDLSRVLVVGGRLQVEVDEVSDDGKRIDLRCLEIFPQVGSTKKTVGKAGKADQASGRRKESVGEGAKKGEQKRMSNPSYDDDDDDDDYGGDEDDYDRLGYDDEW 457
            MHPRMIRIAMFLAAATLNYGDSFVYQSTRTLSMRIPYETPWRRHTKVPVARPGVHALSSLRVNQHLSGTVISLYEGTGHRKLFVDVGVTRTDVRGRHFPVFGMVRLQGPYQNKTYTYGQQVQDLYVRAVFPEPARLFLSLTPVYKRPVSDGTGEPLPVHRLQDLKVGMPLLNATVVSLTDNYCFLDAGVVRGQTEAEQAKMMHDGGKGGEKGTPRRRLRHPKPRPLMGRLYRGDLLEQYALTDKFRTATTKAVLTPGMSLPVYVKGVHLDSWQYSLTVDPEMTEEKAAALKEERKAQLKAQASKQPVDALLIGESRKGVITKILPGGVKVGIGVKITGFVPLDSVSEAYGEEIKDLSRVLVVGGRLQVEVDEVSDDGKRIDLRCLEIFPQVGSTKKTVGKAGKADQASGRRKESVGEGAKKGEQKRMSNPSYDDDDDDDDYGGDEDDYDRLGYDDEW
Sbjct:    1 MHPRMIRIAMFLAAATLNYGDSFVYQSTRTLSMRIPYETPWRRHTKVPVARPGVHALSSLRVNQHLSGTVISLYEGTGHRKLFVDVGVTRTDVRGRHFPVFGMVRLQGPYQNKTYTYGQQVQDLYVRAVFPEPARLFLSLTPVYKRPVSDGTGEPLPVHRLQDLKVGMPLLNATVVSLTDNYCFLDAGVVRGQTEAEQAKMMHDGGKGGEKGTPRRRLRHPKPRPLMGRLYRGDLLEQYALTDKFRTATTKAVLTPGMSLPVYVKGVHLDSWQYSLTVDPEMTEEKAAALKEERKAQLKAQASKQPVDALLIGESRKGVITKILPGGVKVGIGVKITGFVPLDSVSEAYGEEIKDLSRVLVVGGRLQVEVDEVSDDGKRIDLRCLEIFPQVGSTKKTVGKAGKADQASGRRKESVGEGAKKGEQKRMSNPSYDDDDDDDDYGGDEDDYDRLGYDDEW 457          
BLAST of EWM26746.1 vs. NCBI_GenBank
Match: gi|298709770|emb|CBJ31572.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 86.2705 bits (212), Expect = 1.325e-14
Identity = 89/329 (27.05%), Postives = 148/329 (44.98%), Query Frame = 0
Query:   57 LSSLRVNQHLSGTVISLYEGTGHRKLFVDVGVTRTDVRGRHFPVFGMVRL--QGPYQNKTYTYGQQVQDLYVRAVFPEPARLFLSL-TPVYKRPVSDGTGEPLPVHRLQDLKVGMPLLNATVVSLTDNYCFLDAGVVRGQTEAEQAKMMHDGGKGGEKGTPRRRLRHPKP---RPLMGRLYRGDLLEQYALTDKF-RTATTKAVLTPGMSLPVYVKGVHLDSWQYSLTVDPEMTEEKAAALKEERKAQLKAQASKQPVDALLIGESRKGVITKILPGGVKVGIGVKITGFVPLDSVSEAYGEEIKDLSRVLVVGGRLQVEVDEVSDDGK 378
            L +L V + L G V++  +GT  +K +V VGV R    G+   V GM+RL  +   + K     + V  +YV  V     RL +SL  P    P+ D +     +  L DLK G  L    V ++T    F+  GV R                       RR+ R  KP     + G L + D+ E  AL+ +  +T     +++ G  + V+VK     + ++ +T+DP ++ E    +K E + +    A ++    L+ GE   G I ++L  G  V +G K  G V + S+SE     + +L+    VG ++ V V+ V ++G+
Sbjct:   73 LENLEVGERLKGVVVTELDGTSGKKAWVRVGVMRRAKGGKFSHVDGMIRLNKEKGLKPKKVAVDKPVT-VYVSKVIEAEGRLEVSLRAPKPLAPIVDTS----TLKPLADLKHGEEL-TGVVKTVTQFAAFVQCGVGR---------------------PTRRKRRDGKPMVMEEVDGFLGKDDVPEDAALSAQLVKTQDQTNIISEGDRVKVFVKETFPGNGRFHVTLDPNVSAEDLRRMKNEVQKKKSKFARRKETGDLVEGEEILGGIVRVLEFGFFVDVGAKANGLVHISSISEKENRYLDNLNEFASVGDKMYVRVNGVDEEGR 374          
The following BLAST results are available for this feature:
BLAST of EWM26746.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585108834|gb|EWM26746.1|0.000e+0100.00Nucleic acid-binding protein [Nannochloropsis gadi... [more]
gi|298709770|emb|CBJ31572.1|1.325e-1427.05conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4094rna4094Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications