rna4035, rna4035 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4035
Unique Name	rna4035
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	393
Alignment location	CM002462.1:675035..677923 -

Link to JBrowse

Properties


Property Name	Value
Product	Zn(2)-C6 fungal-type DNA-binding protein
Orig transcript id	gnl\|cribi\|Naga_100001g82.8209.mrna
Orig protein id	gnl\|cribi\|Naga_100001g82.8209
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:675035..677923 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g82	gene3881	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26698.1	cds4025	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4035	rna4035-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:675035..677923-
coding sequence from alignment at CM002462.1:675035..677923-

mRNA sequence

>rna4035 ID=rna4035|Name=rna4035|organism=Nannochloropsis gaditana|type=mRNA|length=393bp
ATGCAAGTCGCTCCTATTCAGCGAGCGGGCAGACCAGGGGGAAGGTGGTT
GTGGCGACATGAATGGCGGGACAGGGCAGACGGCGCGCGACGTCTTGAGA
CTTGGGGAAAGGGTGCACAGCACAGGCAGGGTGTGGGCTCGCGTCCGCAC
CACAGAAACAGAGAACCTACAACAAGAGGAAGAACAGCAAGGGCAAGGAC
AAGATCACCAAGTTATATCCTTCTTCAGCTGTCAAGACGATCTTCAAAGA
TGAGAAAGAACTTTTACGATGCAGCACCAGCCTTAATTTCAATGATAGTC
ACGATGACTTGGACATGTACCTCTCGAATGGAGGAGGCAGGTGAGGTGCT
GGGAACTTCGGGATCACGCACTGGCTTGCCTCCTGGCCGATAG

protein sequence of rna4035

>rna4035-protein ID=rna4035-protein|Name=rna4035|organism=Nannochloropsis gaditana|type=polypeptide|length=962bp
MSLSTPIPPDFEGEPPPLYTDGMFEEGVEGVEEQHVNVSYMKGEGEEIEG
VHTADMERKGGQLQGRAAAQSEEAAVFMGGACPENNMGMRISTSLNSIET
DVTNAGRQEVLSPRNRTTPRRSCGGPKVWMEEKVFGEDPHGGKRPCSTCR
KSKVRCDRGFPCTRCVRLGLDCREQARVRRGGLSRSHGGRPHSANSSVTS
GGSVHRESSACSMDSLNQAGKEVIMPPSVSSSSPSSQGQRRRADAFGKRG
GGRGRGRSRGIVRPLHVNNMASHPVAGHTVHPGLSEPQAGQGTRAPFPSS
HLPTLSDPALLCADAALDAGASFYGLGSGQEGDDCSMSQGASGNHPTRRS
FLLNPDGPSLPLQHPHQASQYHSKRPRQQQNQEEQTHVPYHALKQPAQLH
FSPGRRPAPHHQLPAHASATYLVSPTQTVMESFLKLHAQSRICRGKSLAV
MRSWALAYSKGLGAAALGDRLSVLSAALGIDWKTALTDPATVEEAARATT
GSTAPEAVVAFEPAHLDPFLRALYTDASAAAALVACQGHTQLLGNALFSR
DFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAML
FSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRL
PCSSRYMLPSAAVTPSVSTHSAGQGPARTASNGSTSISSCTTGSNSGSAG
GGGGMRRGASTSSNSSSTSDGLNLQGNAEGQGEDDDTSASARSTTSSDFS
SFSSHHRDQQQHPRHPQPPLRQQDEVEGQKRPRHLSPPFLVHGANASAAA
MAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNGQR
HAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEG
MPHGMGTDAKIPPTATDAAGGDGQHGGGGEGPLESALTDALAGENARATE
RDEMLHFLEEYF

mRNA from alignment at CM002462.1:675035..677923-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4035 ID=rna4035|Name=rna4035|organism=Nannochloropsis gaditana|type=mRNA|length=2889bp|location=Sequence derived from alignment at CM002462.1:675035..677923- (Nannochloropsis gaditana)
ATGTCTCTATCAACTCCAATACCCCCGGATTTCGAAGGGGAGCCTCCGCC
ACTCTACACGGACGGGATGTTTGAAGAGGGCGTGGAAGGTGTTGAAGAGC
AACATGTTAATGTATCGTACATGAAGGGAGAGGGAGAGGAGATCGAAGGA
GTACATACTGCGGACATGGAAAGGAAAGGGGGCCAGCTCCAAGGCAGAGC
GGCTGCACAATCTGAAGAAGCGGCAGTTTTCATGGGGGGTGCTTGCCCTG
AGAATAACATGGGCATGCGTATAAGCACTAGCTTAAACAGCATTGAGACC
GACGTGACCAACGCAGGGAGGCAAGAGGTACTGAGCCCGCGCAACCGCAC
GACTCCTCGGCGTTCCTGCGGAGGGCCCAAGGTATGGATGGAAGAGAAAG
TGTTTGGGGAGGATCCACACGGAGGGAAACGTCCTTGCTCAACGTGTCGG
AAATCCAAGGTTCGCTGCGACCGCGGCTTCCCCTGCACGCGCTGTGTACG
CCTGGGCCTGGACTGCCGCGAGCAAGCTAGGGTACGGCGCGGAGGCCTAT
CGCGCTCCCACGGAGGCAGGCCCCACAGCGCCAACTCCAGCGTCACCAGC
GGCGGAAGCGTGCACAGAGAGTCGTCGGCATGCTCAATGGATAGCTTAAA
CCAGGCGGGGAAGGAGGTGATTATGCCCCCCTCCGTTTCGTCAAGCTCAC
CGTCCAGCCAAGGCCAGCGGCGGCGTGCAGACGCGTTTGGGAAACGCGGC
GGCGGCCGAGGGCGGGGGCGGAGCCGAGGAATTGTCCGACCCCTGCACGT
GAATAACATGGCTTCCCATCCTGTGGCTGGCCATACCGTGCACCCTGGCC
TTTCCGAGCCGCAGGCGGGGCAGGGAACGCGGGCGCCCTTCCCGAGCTCG
CACCTGCCGACGCTCTCCGACCCCGCCCTTCTTTGCGCCGACGCGGCCTT
AGATGCAGGCGCGTCTTTCTACGGCCTGGGGTCCGGTCAAGAAGGTGATG
ACTGTAGCATGAGCCAGGGAGCCTCCGGCAACCATCCGACGCGCCGCAGC
TTTCTCTTGAACCCCGACGGACCCTCTCTGCCCCTCCAGCACCCCCACCA
GGCCTCGCAATACCATTCAAAACGCCCGCGTCAGCAGCAGAATCAAGAAG
AGCAAACCCATGTCCCCTACCACGCGTTGAAGCAGCCAGCACAGCTGCAT
TTCTCTCCAGGGCGGCGTCCCGCACCGCACCATCAGCTTCCAGCACATGC
CTCGGCGACCTATTTGGTCAGCCCCACGCAGACTGTCATGGAGAGCTTTT
TGAAACTCCACGCCCAGTCCCGTATTTGCCGCGGCAAGTCACTGGCGGTC
ATGCGGTCATGGGCTCTCGCTTACTCCAAGGGCCTCGGCGCCGCCGCCCT
AGGAGACAGGCTCAGCGTGCTTTCGGCGGCCTTGGGAATCGACTGGAAAA
CGGCTCTGACGGACCCGGCGACTGTCGAAGAGGCCGCCAGGGCAACGACA
GGGAGCACCGCGCCTGAAGCGGTGGTGGCGTTTGAGCCGGCCCACCTCGA
CCCGTTCTTGCGGGCGCTTTATACGGATGCCAGCGCAGCTGCAGCCCTGG
TGGCATGCCAGGGTCACACACAGCTCCTCGGCAACGCCCTTTTCTCTCGC
GATTTCATCGACCCCGCCTCATGCAACGCAGCGTGGGTGCAGGTCCGAGA
GCGACAGCAGGAGGCAGGCACGGACCCGATGGACATCTTGGGCGGCCTCC
TCAGTCGGGAGGACCAGGGGGAGTTCTTCCACTCGGTGGGGGCCATGCTC
TTCAGCAACCCGCGGCCTTGCGCGGAGATGGCGCACATTGCTCGTGTCCT
GACCCGACAACGGGAGAGTATCCTGGCCTTGGTTCGTGTTCGGTTCCATC
TGGCGGATGGGGGGGGCTACTCGGCTTTCGTGCTCAGCTTCCAACGGTTG
CCTTGCAGCTCGCGCTACATGCTTCCCTCGGCCGCTGTGACGCCCTCTGT
CTCCACACACTCTGCAGGCCAAGGACCAGCTAGGACGGCAAGCAACGGAT
CCACGAGCATCAGCTCCTGCACAACCGGCAGCAACAGCGGCAGCGCTGGC
GGGGGGGGGGGCATGCGGCGGGGGGCAAGTACCTCCAGTAACAGCAGCAG
TACCAGCGACGGCCTGAATCTACAAGGCAACGCAGAAGGACAAGGGGAGG
ATGACGATACCTCGGCCTCGGCTCGTTCGACCACCAGCAGTGATTTCAGC
TCGTTTTCGAGCCATCATCGTGATCAGCAACAGCATCCGCGGCACCCTCA
GCCGCCATTAAGACAGCAAGACGAGGTCGAGGGTCAAAAACGCCCCAGAC
ACTTGTCTCCGCCCTTTCTTGTTCATGGAGCGAATGCCTCTGCAGCTGCC
ATGGCCGGCCGAGTCTCGGGTAGCTATCCCGGCTCGGGGGAGGCGGGAGA
GGGGAAGGCGGCGCTTTCGCCTTCGAACACAGTGTACGGAGGAGCGCAAC
AAGTCAAAGGTGGGGAGGTCTCCGTCCTGCACAGTAATAATGGGCAACGA
CATGCGCAGAATCCGGAGGGAATTGAAAAAGAGCAGCTATCGCAGCCGAG
CTGGCTTCGAGGCGTGGAGGACACCTGGTGGGTCAGTGCAGGACCGCATG
ACTTGGAGCGGGCCCCCGCAGGGTTGCCGACGCTGGAAGCGGGCGAAGGC
ATGCCTCATGGGATGGGAACGGATGCGAAGATCCCTCCAACTGCCACGGA
TGCCGCGGGGGGGGATGGGCAGCACGGGGGGGGAGGAGAGGGGCCCTTGG
AAAGTGCCTTGACCGATGCGCTCGCAGGTGAGAACGCCCGTGCGACGGAG
CGGGATGAAATGTTGCATTTCTTGGAAGAGTATTTCTAG

Coding sequence (CDS) from alignment at CM002462.1:675035..677923-

>rna4035 ID=rna4035|Name=rna4035|organism=Nannochloropsis gaditana|type=CDS|length=2889bp|location=Sequence derived from alignment at CM002462.1:675035..677923- (Nannochloropsis gaditana)
ATGTCTCTATCAACTCCAATACCCCCGGATTTCGAAGGGGAGCCTCCGCC
ACTCTACACGGACGGGATGTTTGAAGAGGGCGTGGAAGGTGTTGAAGAGC
AACATGTTAATGTATCGTACATGAAGGGAGAGGGAGAGGAGATCGAAGGA
GTACATACTGCGGACATGGAAAGGAAAGGGGGCCAGCTCCAAGGCAGAGC
GGCTGCACAATCTGAAGAAGCGGCAGTTTTCATGGGGGGTGCTTGCCCTG
AGAATAACATGGGCATGCGTATAAGCACTAGCTTAAACAGCATTGAGACC
GACGTGACCAACGCAGGGAGGCAAGAGGTACTGAGCCCGCGCAACCGCAC
GACTCCTCGGCGTTCCTGCGGAGGGCCCAAGGTATGGATGGAAGAGAAAG
TGTTTGGGGAGGATCCACACGGAGGGAAACGTCCTTGCTCAACGTGTCGG
AAATCCAAGGTTCGCTGCGACCGCGGCTTCCCCTGCACGCGCTGTGTACG
CCTGGGCCTGGACTGCCGCGAGCAAGCTAGGGTACGGCGCGGAGGCCTAT
CGCGCTCCCACGGAGGCAGGCCCCACAGCGCCAACTCCAGCGTCACCAGC
GGCGGAAGCGTGCACAGAGAGTCGTCGGCATGCTCAATGGATAGCTTAAA
CCAGGCGGGGAAGGAGGTGATTATGCCCCCCTCCGTTTCGTCAAGCTCAC
CGTCCAGCCAAGGCCAGCGGCGGCGTGCAGACGCGTTTGGGAAACGCGGC
GGCGGCCGAGGGCGGGGGCGGAGCCGAGGAATTGTCCGACCCCTGCACGT
GAATAACATGGCTTCCCATCCTGTGGCTGGCCATACCGTGCACCCTGGCC
TTTCCGAGCCGCAGGCGGGGCAGGGAACGCGGGCGCCCTTCCCGAGCTCG
CACCTGCCGACGCTCTCCGACCCCGCCCTTCTTTGCGCCGACGCGGCCTT
AGATGCAGGCGCGTCTTTCTACGGCCTGGGGTCCGGTCAAGAAGGTGATG
ACTGTAGCATGAGCCAGGGAGCCTCCGGCAACCATCCGACGCGCCGCAGC
TTTCTCTTGAACCCCGACGGACCCTCTCTGCCCCTCCAGCACCCCCACCA
GGCCTCGCAATACCATTCAAAACGCCCGCGTCAGCAGCAGAATCAAGAAG
AGCAAACCCATGTCCCCTACCACGCGTTGAAGCAGCCAGCACAGCTGCAT
TTCTCTCCAGGGCGGCGTCCCGCACCGCACCATCAGCTTCCAGCACATGC
CTCGGCGACCTATTTGGTCAGCCCCACGCAGACTGTCATGGAGAGCTTTT
TGAAACTCCACGCCCAGTCCCGTATTTGCCGCGGCAAGTCACTGGCGGTC
ATGCGGTCATGGGCTCTCGCTTACTCCAAGGGCCTCGGCGCCGCCGCCCT
AGGAGACAGGCTCAGCGTGCTTTCGGCGGCCTTGGGAATCGACTGGAAAA
CGGCTCTGACGGACCCGGCGACTGTCGAAGAGGCCGCCAGGGCAACGACA
GGGAGCACCGCGCCTGAAGCGGTGGTGGCGTTTGAGCCGGCCCACCTCGA
CCCGTTCTTGCGGGCGCTTTATACGGATGCCAGCGCAGCTGCAGCCCTGG
TGGCATGCCAGGGTCACACACAGCTCCTCGGCAACGCCCTTTTCTCTCGC
GATTTCATCGACCCCGCCTCATGCAACGCAGCGTGGGTGCAGGTCCGAGA
GCGACAGCAGGAGGCAGGCACGGACCCGATGGACATCTTGGGCGGCCTCC
TCAGTCGGGAGGACCAGGGGGAGTTCTTCCACTCGGTGGGGGCCATGCTC
TTCAGCAACCCGCGGCCTTGCGCGGAGATGGCGCACATTGCTCGTGTCCT
GACCCGACAACGGGAGAGTATCCTGGCCTTGGTTCGTGTTCGGTTCCATC
TGGCGGATGGGGGGGGCTACTCGGCTTTCGTGCTCAGCTTCCAACGGTTG
CCTTGCAGCTCGCGCTACATGCTTCCCTCGGCCGCTGTGACGCCCTCTGT
CTCCACACACTCTGCAGGCCAAGGACCAGCTAGGACGGCAAGCAACGGAT
CCACGAGCATCAGCTCCTGCACAACCGGCAGCAACAGCGGCAGCGCTGGC
GGGGGGGGGGGCATGCGGCGGGGGGCAAGTACCTCCAGTAACAGCAGCAG
TACCAGCGACGGCCTGAATCTACAAGGCAACGCAGAAGGACAAGGGGAGG
ATGACGATACCTCGGCCTCGGCTCGTTCGACCACCAGCAGTGATTTCAGC
TCGTTTTCGAGCCATCATCGTGATCAGCAACAGCATCCGCGGCACCCTCA
GCCGCCATTAAGACAGCAAGACGAGGTCGAGGGTCAAAAACGCCCCAGAC
ACTTGTCTCCGCCCTTTCTTGTTCATGGAGCGAATGCCTCTGCAGCTGCC
ATGGCCGGCCGAGTCTCGGGTAGCTATCCCGGCTCGGGGGAGGCGGGAGA
GGGGAAGGCGGCGCTTTCGCCTTCGAACACAGTGTACGGAGGAGCGCAAC
AAGTCAAAGGTGGGGAGGTCTCCGTCCTGCACAGTAATAATGGGCAACGA
CATGCGCAGAATCCGGAGGGAATTGAAAAAGAGCAGCTATCGCAGCCGAG
CTGGCTTCGAGGCGTGGAGGACACCTGGTGGGTCAGTGCAGGACCGCATG
ACTTGGAGCGGGCCCCCGCAGGGTTGCCGACGCTGGAAGCGGGCGAAGGC
ATGCCTCATGGGATGGGAACGGATGCGAAGATCCCTCCAACTGCCACGGA
TGCCGCGGGGGGGGATGGGCAGCACGGGGGGGGAGGAGAGGGGCCCTTGG
AAAGTGCCTTGACCGATGCGCTCGCAGGTGAGAACGCCCGTGCGACGGAG
CGGGATGAAATGTTGCATTTCTTGGAAGAGTATTTCTAG

Synonyms

Publications