EWM26698.1, cds4025 (CDS) Nannochloropsis gaditana

Overview
NameEWM26698.1
Unique Namecds4025
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:675035..677923 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26698.1
ProductZn(2)-C6 fungal-type DNA-binding protein
Orig transcript idgnl|cribi|Naga_100001g82.8209.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:675035..677923 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
BLAST of EWM26698.1 vs. NCBI_GenBank
Match: gi|585108786|gb|EWM26698.1| (Zn(2)-C6 fungal-type DNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1962.58 bits (5083), Expect = 0.000e+0
Identity = 962/962 (100.00%), Postives = 962/962 (100.00%), Query Frame = 0
Query:    1 MSLSTPIPPDFEGEPPPLYTDGMFEEGVEGVEEQHVNVSYMKGEGEEIEGVHTADMERKGGQLQGRAAAQSEEAAVFMGGACPENNMGMRISTSLNSIETDVTNAGRQEVLSPRNRTTPRRSCGGPKVWMEEKVFGEDPHGGKRPCSTCRKSKVRCDRGFPCTRCVRLGLDCREQARVRRGGLSRSHGGRPHSANSSVTSGGSVHRESSACSMDSLNQAGKEVIMPPSVSSSSPSSQGQRRRADAFGKRGGGRGRGRSRGIVRPLHVNNMASHPVAGHTVHPGLSEPQAGQGTRAPFPSSHLPTLSDPALLCADAALDAGASFYGLGSGQEGDDCSMSQGASGNHPTRRSFLLNPDGPSLPLQHPHQASQYHSKRPRQQQNQEEQTHVPYHALKQPAQLHFSPGRRPAPHHQLPAHASATYLVSPTQTVMESFLKLHAQSRICRGKSLAVMRSWALAYSKGLGAAALGDRLSVLSAALGIDWKTALTDPATVEEAARATTGSTAPEAVVAFEPAHLDPFLRALYTDASAAAALVACQGHTQLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRLPCSSRYMLPSAAVTPSVSTHSAGQGPARTASNGSTSISSCTTGSNSGSAGGGGGMRRGASTSSNSSSTSDGLNLQGNAEGQGEDDDTSASARSTTSSDFSSFSSHHRDQQQHPRHPQPPLRQQDEVEGQKRPRHLSPPFLVHGANASAAAMAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNGQRHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEGMPHGMGTDAKIPPTATDAAGGDGQHGGGGEGPLESALTDALAGENARATERDEMLHFLEEYF 962
            MSLSTPIPPDFEGEPPPLYTDGMFEEGVEGVEEQHVNVSYMKGEGEEIEGVHTADMERKGGQLQGRAAAQSEEAAVFMGGACPENNMGMRISTSLNSIETDVTNAGRQEVLSPRNRTTPRRSCGGPKVWMEEKVFGEDPHGGKRPCSTCRKSKVRCDRGFPCTRCVRLGLDCREQARVRRGGLSRSHGGRPHSANSSVTSGGSVHRESSACSMDSLNQAGKEVIMPPSVSSSSPSSQGQRRRADAFGKRGGGRGRGRSRGIVRPLHVNNMASHPVAGHTVHPGLSEPQAGQGTRAPFPSSHLPTLSDPALLCADAALDAGASFYGLGSGQEGDDCSMSQGASGNHPTRRSFLLNPDGPSLPLQHPHQASQYHSKRPRQQQNQEEQTHVPYHALKQPAQLHFSPGRRPAPHHQLPAHASATYLVSPTQTVMESFLKLHAQSRICRGKSLAVMRSWALAYSKGLGAAALGDRLSVLSAALGIDWKTALTDPATVEEAARATTGSTAPEAVVAFEPAHLDPFLRALYTDASAAAALVACQGHTQLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRLPCSSRYMLPSAAVTPSVSTHSAGQGPARTASNGSTSISSCTTGSNSGSAGGGGGMRRGASTSSNSSSTSDGLNLQGNAEGQGEDDDTSASARSTTSSDFSSFSSHHRDQQQHPRHPQPPLRQQDEVEGQKRPRHLSPPFLVHGANASAAAMAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNGQRHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEGMPHGMGTDAKIPPTATDAAGGDGQHGGGGEGPLESALTDALAGENARATERDEMLHFLEEYF
Sbjct:    1 MSLSTPIPPDFEGEPPPLYTDGMFEEGVEGVEEQHVNVSYMKGEGEEIEGVHTADMERKGGQLQGRAAAQSEEAAVFMGGACPENNMGMRISTSLNSIETDVTNAGRQEVLSPRNRTTPRRSCGGPKVWMEEKVFGEDPHGGKRPCSTCRKSKVRCDRGFPCTRCVRLGLDCREQARVRRGGLSRSHGGRPHSANSSVTSGGSVHRESSACSMDSLNQAGKEVIMPPSVSSSSPSSQGQRRRADAFGKRGGGRGRGRSRGIVRPLHVNNMASHPVAGHTVHPGLSEPQAGQGTRAPFPSSHLPTLSDPALLCADAALDAGASFYGLGSGQEGDDCSMSQGASGNHPTRRSFLLNPDGPSLPLQHPHQASQYHSKRPRQQQNQEEQTHVPYHALKQPAQLHFSPGRRPAPHHQLPAHASATYLVSPTQTVMESFLKLHAQSRICRGKSLAVMRSWALAYSKGLGAAALGDRLSVLSAALGIDWKTALTDPATVEEAARATTGSTAPEAVVAFEPAHLDPFLRALYTDASAAAALVACQGHTQLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRLPCSSRYMLPSAAVTPSVSTHSAGQGPARTASNGSTSISSCTTGSNSGSAGGGGGMRRGASTSSNSSSTSDGLNLQGNAEGQGEDDDTSASARSTTSSDFSSFSSHHRDQQQHPRHPQPPLRQQDEVEGQKRPRHLSPPFLVHGANASAAAMAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNGQRHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEGMPHGMGTDAKIPPTATDAAGGDGQHGGGGEGPLESALTDALAGENARATERDEMLHFLEEYF 962          
BLAST of EWM26698.1 vs. NCBI_GenBank
Match: gi|553186586|ref|XP_005854447.1| (hypothetical protein NGA_0218400 [Nannochloropsis gaditana CCMP526] >gi|422294613|gb|EKU21913.1| hypothetical protein NGA_0218400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 239.965 bits (611), Expect = 8.147e-71
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0
Query:  801 MAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNGQRHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEGMPHGMGTDAKIPPTATDAAG 920
            MAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNG RHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEGMPHGMGTDAKIPPTATD  G
Sbjct:    1 MAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNGHRHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEGMPHGMGTDAKIPPTATDGHG 120          
BLAST of EWM26698.1 vs. NCBI_GenBank
Match: gi|585110393|gb|EWM28051.1| (fungal specific transcription [Nannochloropsis gaditana])

HSP 1 Score: 69.3218 bits (168), Expect = 3.302e-8
Identity = 82/322 (25.47%), Postives = 129/322 (40.06%), Query Frame = 0
Query:  431 ESFLKLHAQSRICRGKSLAVMRSWALAYSK-----GLGAAALGDRLSVL--SAALGIDWKTALTDPAT-VEEAARATTGSTAPEAVVAFEPAHLDPFLRALYTDA-SAAAALVACQGHTQLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRLPCSSRYMLPSAAVTPSVSTHSAGQGPARTASNGSTSISSCTTGSNSGSAGGGGGMRRGASTSSNSSSTSD-GLNL--------QGNAEGQGED 734
            E+ L++    R+   K+LA++R+W     K       GA+A   R+  L  SAA       +     T  E+         A +   A + AH+  ++ +L     SA    V C G  +L     F+  F+  ++ N+ + Q +         P  + G  L+  D+  F+ S+   +    R   EM   A V+        ALVR R+ + + G YS F LSF ++P      LP   V P++   S     A  A++ S S  +C   S + S   G        TS     T D G+NL        Q    G+GE+
Sbjct:  611 ETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTK-------ILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIP-----GLPVRFVPPTIHPSSI----ASAAADQSRS-DACPDVSMASSHTRGAAPHAKKKTSPAKHRTVDMGVNLVDGRREVNQAEEYGRGEE 915          
BLAST of EWM26698.1 vs. NCBI_GenBank
Match: gi|585109256|gb|EWM27081.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 63.929 bits (154), Expect = 6.829e-7
Identity = 42/149 (28.19%), Postives = 69/149 (46.31%), Query Frame = 0
Query:  511 FEPAHLDPFLRALYTDASAAAALVACQGHT-QLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRLPCSSRYML 658
             +P  L PF+ +L    SA    V C+G T ++  N  F   F            + +R     T P+ +   +++ ED+ EF  S+  + F       ++ HI +VL RQ    LA+VR+R    + G Y A +L+ +  P  S+Y+L
Sbjct:  217 LDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSE-------DLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAP-MSKYVL 357          
The following BLAST results are available for this feature:
BLAST of EWM26698.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585108786|gb|EWM26698.1|0.000e+0100.00Zn(2)-C6 fungal-type DNA-binding protein [Nannochl... [more]
gi|553186586|ref|XP_005854447.1|8.147e-7197.50hypothetical protein NGA_0218400 [Nannochloropsis ... [more]
gi|585110393|gb|EWM28051.1|3.302e-825.47fungal specific transcription [Nannochloropsis gad... [more]
gi|585109256|gb|EWM27081.1|6.829e-728.19Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4035rna4035Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications