EWM26698.1, cds4025 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26698.1 vs. NCBI_GenBank
Match: gi|585108786|gb|EWM26698.1| (Zn(2)-C6 fungal-type DNA-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 1962.58 bits (5083), Expect = 0.000e+0 Identity = 962/962 (100.00%), Postives = 962/962 (100.00%), Query Frame = 0
Query: 1 MSLSTPIPPDFEGEPPPLYTDGMFEEGVEGVEEQHVNVSYMKGEGEEIEGVHTADMERKGGQLQGRAAAQSEEAAVFMGGACPENNMGMRISTSLNSIETDVTNAGRQEVLSPRNRTTPRRSCGGPKVWMEEKVFGEDPHGGKRPCSTCRKSKVRCDRGFPCTRCVRLGLDCREQARVRRGGLSRSHGGRPHSANSSVTSGGSVHRESSACSMDSLNQAGKEVIMPPSVSSSSPSSQGQRRRADAFGKRGGGRGRGRSRGIVRPLHVNNMASHPVAGHTVHPGLSEPQAGQGTRAPFPSSHLPTLSDPALLCADAALDAGASFYGLGSGQEGDDCSMSQGASGNHPTRRSFLLNPDGPSLPLQHPHQASQYHSKRPRQQQNQEEQTHVPYHALKQPAQLHFSPGRRPAPHHQLPAHASATYLVSPTQTVMESFLKLHAQSRICRGKSLAVMRSWALAYSKGLGAAALGDRLSVLSAALGIDWKTALTDPATVEEAARATTGSTAPEAVVAFEPAHLDPFLRALYTDASAAAALVACQGHTQLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRLPCSSRYMLPSAAVTPSVSTHSAGQGPARTASNGSTSISSCTTGSNSGSAGGGGGMRRGASTSSNSSSTSDGLNLQGNAEGQGEDDDTSASARSTTSSDFSSFSSHHRDQQQHPRHPQPPLRQQDEVEGQKRPRHLSPPFLVHGANASAAAMAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNGQRHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEGMPHGMGTDAKIPPTATDAAGGDGQHGGGGEGPLESALTDALAGENARATERDEMLHFLEEYF 962
MSLSTPIPPDFEGEPPPLYTDGMFEEGVEGVEEQHVNVSYMKGEGEEIEGVHTADMERKGGQLQGRAAAQSEEAAVFMGGACPENNMGMRISTSLNSIETDVTNAGRQEVLSPRNRTTPRRSCGGPKVWMEEKVFGEDPHGGKRPCSTCRKSKVRCDRGFPCTRCVRLGLDCREQARVRRGGLSRSHGGRPHSANSSVTSGGSVHRESSACSMDSLNQAGKEVIMPPSVSSSSPSSQGQRRRADAFGKRGGGRGRGRSRGIVRPLHVNNMASHPVAGHTVHPGLSEPQAGQGTRAPFPSSHLPTLSDPALLCADAALDAGASFYGLGSGQEGDDCSMSQGASGNHPTRRSFLLNPDGPSLPLQHPHQASQYHSKRPRQQQNQEEQTHVPYHALKQPAQLHFSPGRRPAPHHQLPAHASATYLVSPTQTVMESFLKLHAQSRICRGKSLAVMRSWALAYSKGLGAAALGDRLSVLSAALGIDWKTALTDPATVEEAARATTGSTAPEAVVAFEPAHLDPFLRALYTDASAAAALVACQGHTQLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRLPCSSRYMLPSAAVTPSVSTHSAGQGPARTASNGSTSISSCTTGSNSGSAGGGGGMRRGASTSSNSSSTSDGLNLQGNAEGQGEDDDTSASARSTTSSDFSSFSSHHRDQQQHPRHPQPPLRQQDEVEGQKRPRHLSPPFLVHGANASAAAMAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNGQRHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEGMPHGMGTDAKIPPTATDAAGGDGQHGGGGEGPLESALTDALAGENARATERDEMLHFLEEYF
Sbjct: 1 MSLSTPIPPDFEGEPPPLYTDGMFEEGVEGVEEQHVNVSYMKGEGEEIEGVHTADMERKGGQLQGRAAAQSEEAAVFMGGACPENNMGMRISTSLNSIETDVTNAGRQEVLSPRNRTTPRRSCGGPKVWMEEKVFGEDPHGGKRPCSTCRKSKVRCDRGFPCTRCVRLGLDCREQARVRRGGLSRSHGGRPHSANSSVTSGGSVHRESSACSMDSLNQAGKEVIMPPSVSSSSPSSQGQRRRADAFGKRGGGRGRGRSRGIVRPLHVNNMASHPVAGHTVHPGLSEPQAGQGTRAPFPSSHLPTLSDPALLCADAALDAGASFYGLGSGQEGDDCSMSQGASGNHPTRRSFLLNPDGPSLPLQHPHQASQYHSKRPRQQQNQEEQTHVPYHALKQPAQLHFSPGRRPAPHHQLPAHASATYLVSPTQTVMESFLKLHAQSRICRGKSLAVMRSWALAYSKGLGAAALGDRLSVLSAALGIDWKTALTDPATVEEAARATTGSTAPEAVVAFEPAHLDPFLRALYTDASAAAALVACQGHTQLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRLPCSSRYMLPSAAVTPSVSTHSAGQGPARTASNGSTSISSCTTGSNSGSAGGGGGMRRGASTSSNSSSTSDGLNLQGNAEGQGEDDDTSASARSTTSSDFSSFSSHHRDQQQHPRHPQPPLRQQDEVEGQKRPRHLSPPFLVHGANASAAAMAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNGQRHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEGMPHGMGTDAKIPPTATDAAGGDGQHGGGGEGPLESALTDALAGENARATERDEMLHFLEEYF 962
BLAST of EWM26698.1 vs. NCBI_GenBank
Match: gi|553186586|ref|XP_005854447.1| (hypothetical protein NGA_0218400 [Nannochloropsis gaditana CCMP526] >gi|422294613|gb|EKU21913.1| hypothetical protein NGA_0218400 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 239.965 bits (611), Expect = 8.147e-71 Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0
Query: 801 MAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNGQRHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEGMPHGMGTDAKIPPTATDAAG 920
MAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNG RHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEGMPHGMGTDAKIPPTATD G
Sbjct: 1 MAGRVSGSYPGSGEAGEGKAALSPSNTVYGGAQQVKGGEVSVLHSNNGHRHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLERAPAGLPTLEAGEGMPHGMGTDAKIPPTATDGHG 120
BLAST of EWM26698.1 vs. NCBI_GenBank
Match: gi|585110393|gb|EWM28051.1| (fungal specific transcription [Nannochloropsis gaditana]) HSP 1 Score: 69.3218 bits (168), Expect = 3.302e-8 Identity = 82/322 (25.47%), Postives = 129/322 (40.06%), Query Frame = 0
Query: 431 ESFLKLHAQSRICRGKSLAVMRSWALAYSK-----GLGAAALGDRLSVL--SAALGIDWKTALTDPAT-VEEAARATTGSTAPEAVVAFEPAHLDPFLRALYTDA-SAAAALVACQGHTQLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRLPCSSRYMLPSAAVTPSVSTHSAGQGPARTASNGSTSISSCTTGSNSGSAGGGGGMRRGASTSSNSSSTSD-GLNL--------QGNAEGQGED 734
E+ L++ R+ K+LA++R+W K GA+A R+ L SAA + T E+ A + A + AH+ ++ +L SA V C G +L F+ F+ ++ N+ + Q + P + G L+ D+ F+ S+ + R EM A V+ ALVR R+ + + G YS F LSF ++P LP V P++ S A A++ S S +C S + S G TS T D G+NL Q G+GE+
Sbjct: 611 ETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTK-------ILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIP-----GLPVRFVPPTIHPSSI----ASAAADQSRS-DACPDVSMASSHTRGAAPHAKKKTSPAKHRTVDMGVNLVDGRREVNQAEEYGRGEE 915
BLAST of EWM26698.1 vs. NCBI_GenBank
Match: gi|585109256|gb|EWM27081.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 63.929 bits (154), Expect = 6.829e-7 Identity = 42/149 (28.19%), Postives = 69/149 (46.31%), Query Frame = 0
Query: 511 FEPAHLDPFLRALYTDASAAAALVACQGHT-QLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRLPCSSRYML 658
+P L PF+ +L SA V C+G T ++ N F F + +R T P+ + +++ ED+ EF S+ + F ++ HI +VL RQ LA+VR+R + G Y A +L+ + P S+Y+L
Sbjct: 217 LDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSE-------DLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAP-MSKYVL 357 The following BLAST results are available for this feature:
BLAST of EWM26698.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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