rna4033, rna4033 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4033
Unique Name	rna4033
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3476
Alignment location	CM002462.1:672545..674661 +

Link to JBrowse

Properties


Property Name	Value
Product	triosephosphate isomerase
Orig transcript id	gnl\|cribi\|Naga_100001g84.8169.mrna
Orig protein id	gnl\|cribi\|Naga_100001g84.8169
Gene	TPI
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:672545..674661 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
TPI	gene3879	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4033	rna4033-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26658.1	cds4023	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:672545..674661+
coding sequence from alignment at CM002462.1:672545..674661+

mRNA sequence

>rna4033 ID=rna4033|Name=rna4033|organism=Nannochloropsis gaditana|type=mRNA|length=3476bp
GTACCCTGTGAGCATTCCTGACCCCTAGGTGCCCCCGTACTTTGCGCGGC
GGCTTTCAGTCAGACCACTCAGAAGACTTTCCCTCCTCGCGTCGCCGGCA
TTTTCTCTCTCCCGCTTCCTCCCTAACGCTTTCGCTTCCGCGTGCTCGCA
TACACGGACTCGAGGGAGGGCATGCACATTCACATGAGCTTTATTAACCG
GTGGTCTCGTCCATACGACGTCAGTAAGCACACAGGGATGGCCGCGCGCC
CCTATCGGACCCGCGCCGTCTCCTAGCACCCTCTCATCCCCCCACATCAA
CTCGGCATGGTTTTTATATGGCCCTTCATTCATGCCTTTCTGGCGGCGCT
GATCACCACCTGGGACGTATTACCACCAACCTCGAAGGCTTACGATTTGG
TTCCCAACCACATAGTGGCCAAGTTGGGGAAAAATACCACCTTTGACCGC
GTGGTAAAGGAGTGGGTACGGGACACATGGCGGTGGGGAGAGCCATCCCT
CAATCCCAGCATTGCCTTGACATGGGTGAATGGTATCAACTACACGAACG
AAGAAATGGAGGAACAGGCCCGGTTCTTGTCCTCCTTGTTCGGGTGCCGT
GTACGCCCTTACTACAACCCGTCTTTGGGCTGGTGGCTGCGTGACCTGAC
GCGCGTTAGCTATATGTACATCCGTTCGCCCACGGAGGACCCGGTCGTGA
CGGGCCTGGCCAGACACCTCTCTCGTGTGCTCTTGGAGGTGGGTCCCAAG
GGTCGTGTCATTCACTTGGCGCACAGCGGCGGTGCCTTGCTCACTTACCT
TGTAGCTAAGTACCACTTGAAGGAGACCGACAGGCGCCGAATCGACGTGT
TGAATTTTGGAGGGGCGCGAAGCATCACTCAAAAGTACTTTGGAAAGGCC
ACCAACTACTACGCACGGAACGACCCCATTCTCCTGGTGAATCGCCGCGC
CATGAATCTGATGCAGCAGCTGTTGAATGAGAGCGCGGACGGGGAGGTGA
TCTACCTGAAGCACAACACCTCCTTCGTCTTCCTCCAGGGCCGGGCGGGG
GATGCCCTCACGGACCACTCCTTCATCGGGCCCACCTATCTCATGGCGCT
TAACAAAGAGGCCGCAGTATTCCGCCGCTCCTACTACCGGCCATACTGGC
TGGACGGGCTCATCATAGCCAAGCCCCCGGACATGGGGTGGGCGCGCTTC
GTCCGCAAGCGCGTCGCCGCCGCCACGGGCTTCCACAACTACTTCTCCAA
CTCGACCTTGGTCCGCCTATATTATGGAGACCCTTTGATGGATAGCTCGA
CGTGGGATAGCACCTCGCGGGCAGCCCTCCATTTTCCCAAGCGCGTTCGA
AAGTACCTGCGCAAGAAATATTTCAGTCTTCGCGGCCTTCCCTACGTGTC
CGCCAAGACTGACAAGGTCAACATTCCCGTGCCCGCCAAACAAGTTCAGC
AGCAGCAGCTCATCCAACAGCAGCTCCGGCAAGAGCAACAGAGGCATTTG
AAGGAAAACAACCGCCATCAGGAACGGTCGGATCGCCCCGGTTGGGGCAT
CGACGGTGCCGCAACGTCCTGGTCTTCGTCGTTGCCGGCCACCCTTAGCT
CCTGGATTGGGCGGTCCTGGAGGCAGAACAACACGCAAGCGCTTGTCCCT
GTACCTGCCCCCGGCAGGAATTCCTTCTCGTTCCAATGGTGGTTCAAAGG
AAAGGGTAGTGGAGTGCTCGGCCGCGGGCGTGGGAGCAGCAGGGGGAGTC
CGAGCAAGGCAGGGTCACTCGTCAAGTTCAGCGTAGAGAGTCCTGGATGG
AGTAGCGCTCTACACGTGTCTAGATTAGCTGTCCAAGATCTCAGAATCCA
CGCTCAGCATCACATCCGACGCGTGCGCAAGCGGGCGGCACGCTGGACGG
GGCGCCGGCATTTTTTTGCCGGCAGGGAAGGGAGGGAAAGAGCCATGGCT
GCGGAGGCCGCCCGGACAGCGGCAGCACTTGCAGAGGCGGAGAAGGCAGT
GAAGGGTGGCCACCCTTTTCTCTTCTTTTTCGGTCGGAGTAAGTTTAGCG
AGGATACTCAGGTCAGGGAGGACGCGGGGTTAGCGGGTATGGCGGGGAGG
AAAGGGCTGGGGATGGGGGTAGAGGGGAAGAAGGGCGGGAAGGAGAGGGC
GCAGCCGGAAATTGTGGAGCCCAAGGACGATGTTTTAAAGCTGGAAGGGA
CGCAGAGGAGAGAGCATGAGGGGGAGACGAAGGCTCAAGACAGCCAGGGG
TCGAGAGAGCCCGTTGCAGTATCTGTCAACTCGGGTGCGTTTGACACCGT
GCTCCCAGCCTCCCCGCAAAAGAATGGGATTCCTGAGGAGAAGGATGCTC
AGGGCATAAGAGAGGTGAATGCGAGCAAGGCGAATGAAGGGGGAGAGCTG
GAGGCGGCCACGGAGGGAGCGAGGGCTTCGGCAGTGTCGGGCGCTGGTGT
CGCCGCCGAGGAGTTGCGGTCGGACTCGATCAGCCCAGAGACATTAGAGG
AGGAGTCACCAGGCCAGCTTCCAGCTACGCGGGAAAAGGGAGTGGGCGCG
GGGTCTGATTCTTCGGGTCAGGAGAGAGAGGATGGACCCGAGCAAGAGCA
AGCAGGGGCGGCTGGCGGCCCCGCCTGTGCGGCCACGGATGGGTGGGAGG
AGTGCGAAAGAGGGAAGGGAAGAAGGAAAGCAGTGGACGTCTGTGGGACG
AGCAGGATGGATTCAGCGCCGGCCACGGGGGGTGGGGTCATTGCGAAGGG
CCCGGAAGTACCCGGTAGCGAGGCGACCCGCCAGCGGGTGGAGGTTCGCC
ACGTCGAAGATGAGGAGTCTGACCTGCCTCTGGCAGCATTCTTGGAGCGA
GACGACGCGGTATGGGAGCAGGAAGGGAAGGGGGAGCAGGGGGGGGGGAA
TGGCAAGTTAGAGGACTGGCGGGTAGACAGAAGTCCAGTGGATATGAGTC
TGGGAAAGGGGAAGGCGAGGCGTGGAGGGGAGAGAGAGGGCGACAGAAGA
GATCCTGGAAGAGAAGAGGAGGGGATCGACGCGAATAAGAGCGAGGACGG
AGGCGGGTCGCATGGGTGCGGTGGGTGTGAGGGCCAACTTGGACGCCGGT
ACCATGACTGCTGACCGACCGGTGACGGTGAGGAGCCTGGCTGTGATTGA
ACCTGCGCTGAACTCGGCAGAGGGCATGTACAGTGTATTATCTATATTCT
GCTACGTTGGGCTCTTATTTACCTGAGGACCACGCATAAAGCTACAAAGT
TTTTCTCTGTAAGTAAAACCAATGAGAGATTTCAAGCTGCGATACGGGTC
TCAGTCTTTTGCTATCAATACTTGTCGACTTGACCAGGTGACTGTTCCTG
CAAATCAAAAAGGTAATAGAGCAAAAAACAGCATACTCCAAGGTTGCACT
GTTGGCTTTCCCCTCCTCGAGCTAATCAATCACCTCAACATACACGTGAT
GTCCCGAAAGCGGTGAGGCCTTTCCC

protein sequence of rna4033

>rna4033-protein ID=rna4033-protein|Name=rna4033|organism=Nannochloropsis gaditana|type=polypeptide|length=272bp
MSTSKAWAEYLARGVPPQKRYLIGGNWKANGTLAQTAGIVKILNQGGAIP
LEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLL
KDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEK
LEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATP
EQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDG
FLVGGASLTSDFVTIIRAVKSP

mRNA from alignment at CM002462.1:672545..674661+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4033 ID=rna4033|Name=rna4033|organism=Nannochloropsis gaditana|type=mRNA|length=2117bp|location=Sequence derived from alignment at CM002462.1:672545..674661+ (Nannochloropsis gaditana)
gaaagtcttCTGAGTGGTCTGACTGAAAGCCGCCGCGCAAAGTACGGGGG
CACCTAGGGGTCAGGAATGCTCACAGGGTACACGATAAGGATGCAAAGGC
TAGCAAGTGGTTCACGTGCGGGTGCATTGACCACAACCCCCGAAGTTCCT
CAGCAAACGTGGTGGATCCAGCTCCGGCGTGAAGGGCAGATGCAAGAACG
AAGTAAAGATAGGTCAGGCATGTGGTCCAAACGCTTTAGGGGTCCGATTT
TTGCCCGCTGCCGTCTCGATGACTACAAATTTGGATGTACTTGTGACAAC
ATCGACCCTAACCCACGGCTTGCTGGGAATGTCATGTTCATGGCCAAAAA
GATCTTACATTTCACTTCtactcctttcctcttcaacaCGCTTACGGAGA
CAGCAAGCACCACAACATGTCGACATCCAAAGCATGGGCAGAATATCTGG
CCCGTGGCGTTCCCCCGCAAAAGCGCTATTTGATCGGTGGGAACTGGAAA
GCCAACGGGACCTTGGCACAGACGGCCGGAATTGTCAAGATTCTCAACCA
GGGCGGAGCTATCCCCCTGGAGGCTGAGGTGGTGATTGCGCCCCCGGCGC
ACCTTTTGGGCTACGTGAAGGACAATCTCCGTCCAGATGTGGCTGTTTCC
GCACAAAACTCGGCCCTGACGACCAAGCCGGGCGCCTTCACGGGGGAATT
ACCCGCTGTGCTGCTTAAGGACTTCGGCCTGAACTGGGTAATCATCGGCC
ACTCCGAACGACGCGAGGGCTTtgggggcccgggggagtCGGACGAGGTC
GTGGCAACCAAGACGAAGGTAGCCGTGGATGCTGGCCTCCATGTCATGGC
TTGCGTGGGCGAGAAGCTCGAACAACgcgaggcggggaagacgacTGAGG
TGGTTTTGTCGCAGTTGAATGCTATTGCATCCAAGCTCGCGCGTGAGGAT
TGGTCCAAGGTGGTAATAGCCTATGAACCTGTGTGGGCCATCGGCACGGG
AAAGGTGGCCACGCCCGAGCAGGCGCAGGAAGTGCATGAGTCCATTCGTG
CCTttgtgaaggagaaggttgGGGCGCAGCAGGCAGCCCTCTTGCGGATC
ATCTATGGAGGCTCCGTCAAGGGTTCCTCCGCCCCAGGGCTTATTCTGAA
GCCGGACATTGACGGCTTCTTGGTGGGCGGCGCGTCGTTGACGAGTGACT
TTGTCACCATTATTCGGGCGGTCAAGAGTCCCTAGACTCGGTGGAGGATA
CGGTTAATATCTATCATGGTTGActcaagggaggggaagtggaCGAGGTA
CCCCAGTGTATGCATTTTGAATTTGAGCTAGGAAGAGAGGTTTTGAATGG
GTGGTGGTCATGGGACCTTCACTGTGGGCGGGTGAATTTCGACAAAAATG
ATCCGGGCTTGGACAAAAGAAAACGAGAAGCAGGAAGGGCCTCACAGGCA
GCTCTATACCCATAATCTCCAACAATTTGTCCGCTTAAGCGACTGTGATA
GAAAACTCGGCTCTTTCTCTCGTGTTTCCACGCCTCCCCTTATGAACAAA
GTCGCATCCGCGCTTCTAGCCTCGCTCCTATCCATCGCCCGACCCGGACA
CCACTCTCCACGAGGGTGTGCCGTGCACGCAATGTCCCAAACGACGCACG
AGAAAAAGGTCGCCTCAAATATGTTCCGGCTACAAATTATTGCAATTGTT
GTGAAATGGCTGCTGTTTAAAGAAATGCACACATTCTGACGCGCCTCTCA
TCCTGTTTTCCGATTTTCCACCGATTGAAAATGACAACAGGCGTTGTTCA
CATAAAAAATTTGTTCGTATGCGTACCGAATCATTAACTGAAATTAAAAC
CAAACATTGCTCCGCGTAAAGCCGACACCTCGAGCACCTTCAAGAGGCTC
GCCCATCCCGGGTACTCCCCTCTATCGGCCAGGAGGCAAGCCAGTGCGTG
ATCCCGAAGTTCCCAGCACCtcacctgcctcctccattcgAGAGGTACAT
GTCCAAGTCATCGTGACTATCATTGAAATTAAGGCTGGTGCTGCATCGTA
AAAGTTCTTTCTCATCTTTGAAGATCGTCTTGACAGCTGAAGAAGGATAT
AACTTGGTGATCTTGTC

Coding sequence (CDS) from alignment at CM002462.1:672545..674661+

>rna4033 ID=rna4033|Name=rna4033|organism=Nannochloropsis gaditana|type=CDS|length=819bp|location=Sequence derived from alignment at CM002462.1:672545..674661+ (Nannochloropsis gaditana)
ATGTCGACATCCAAAGCATGGGCAGAATATCTGGCCCGTGGCGTTCCCCC
GCAAAAGCGCTATTTGATCGGTGGGAACTGGAAAGCCAACGGGACCTTGG
CACAGACGGCCGGAATTGTCAAGATTCTCAACCAGGGCGGAGCTATCCCC
CTGGAGGCTGAGGTGGTGATTGCGCCCCCGGCGCACCTTTTGGGCTACGT
GAAGGACAATCTCCGTCCAGATGTGGCTGTTTCCGCACAAAACTCGGCCC
TGACGACCAAGCCGGGCGCCTTCACGGGGGAATTACCCGCTGTGCTGCTT
AAGGACTTCGGCCTGAACTGGGTAATCATCGGCCACTCCGAACGACGCGA
GGGCTTtgggggcccgggggagtCGGACGAGGTCGTGGCAACCAAGACGA
AGGTAGCCGTGGATGCTGGCCTCCATGTCATGGCTTGCGTGGGCGAGAAG
CTCGAACAACgcgaggcggggaagacgacTGAGGTGGTTTTGTCGCAGTT
GAATGCTATTGCATCCAAGCTCGCGCGTGAGGATTGGTCCAAGGTGGTAA
TAGCCTATGAACCTGTGTGGGCCATCGGCACGGGAAAGGTGGCCACGCCC
GAGCAGGCGCAGGAAGTGCATGAGTCCATTCGTGCCTttgtgaaggagaa
ggttgGGGCGCAGCAGGCAGCCCTCTTGCGGATCATCTATGGAGGCTCCG
TCAAGGGTTCCTCCGCCCCAGGGCTTATTCTGAAGCCGGACATTGACGGC
TTCTTGGTGGGCGGCGCGTCGTTGACGAGTGACTTTGTCACCATTATTCG
GGCGGTCAAGAGTCCCTAG

Synonyms

Publications